Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0695
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY241928-1|AAO85277.1|  806|Caenorhabditis elegans xylosyltransf...    29   3.2  
AJ496235-1|CAD42732.1|  806|Caenorhabditis elegans peptide O-xyl...    29   3.2  
AC025722-4|AAK68509.3|  806|Caenorhabditis elegans Squashed vulv...    29   3.2  
U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U40954-7|AAB52654.2|  145|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF067617-4|AAC17557.1|  381|Caenorhabditis elegans Hypothetical ...    27   9.7  

>AY241928-1|AAO85277.1|  806|Caenorhabditis elegans
           xylosyltransferase protein.
          Length = 806

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
 Frame = -2

Query: 405 TVSLDHLEYKTPHYDFAFKSSIIYSVAKKKYH------Q*INSTNERPFYKLRKMFNHEA 244
           ++S + L+   P Y FAF +     + ++K H        + ST  R   K RK+   +A
Sbjct: 523 SISPEKLQLNHPTYHFAFANIFKTGIDEQKLHFESLANFALKSTETRA--KFRKVLRIDA 580

Query: 243 RRRHNQITRKGSHARPKIIICLQTNAGGV*RSSKFSFVIYRLSYV 109
            R H+       +A  +I++ ++T  G     + F F+I+RLS+V
Sbjct: 581 LRAHH-------NALIEIVMKIETTDG-----ATFEFLIHRLSHV 613


>AJ496235-1|CAD42732.1|  806|Caenorhabditis elegans peptide
           O-xylosyltransferase protein.
          Length = 806

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
 Frame = -2

Query: 405 TVSLDHLEYKTPHYDFAFKSSIIYSVAKKKYH------Q*INSTNERPFYKLRKMFNHEA 244
           ++S + L+   P Y FAF +     + ++K H        + ST  R   K RK+   +A
Sbjct: 523 SISPEKLQLNHPTYHFAFANIFKTGIDEQKLHFESLANFALKSTETRA--KFRKVLRIDA 580

Query: 243 RRRHNQITRKGSHARPKIIICLQTNAGGV*RSSKFSFVIYRLSYV 109
            R H+       +A  +I++ ++T  G     + F F+I+RLS+V
Sbjct: 581 LRAHH-------NALIEIVMKIETTDG-----ATFEFLIHRLSHV 613


>AC025722-4|AAK68509.3|  806|Caenorhabditis elegans Squashed vulva
           protein 6 protein.
          Length = 806

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
 Frame = -2

Query: 405 TVSLDHLEYKTPHYDFAFKSSIIYSVAKKKYH------Q*INSTNERPFYKLRKMFNHEA 244
           ++S + L+   P Y FAF +     + ++K H        + ST  R   K RK+   +A
Sbjct: 523 SISPEKLQLNHPTYHFAFANIFKTGIDEQKLHFESLANFALKSTETRA--KFRKVLRIDA 580

Query: 243 RRRHNQITRKGSHARPKIIICLQTNAGGV*RSSKFSFVIYRLSYV 109
            R H+       +A  +I++ ++T  G     + F F+I+RLS+V
Sbjct: 581 LRAHH-------NALIEIVMKIETTDG-----ATFEFLIHRLSHV 613


>U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical
           protein T13C2.6a protein.
          Length = 909

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 570 TVNECGTPNFF**ATGEYLPERWRPDA 490
           TVN+C     +   +GE +P RWR DA
Sbjct: 208 TVNQCPPGEMWKCGSGECIPSRWRCDA 234


>U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical
           protein T13C2.6b protein.
          Length = 911

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 570 TVNECGTPNFF**ATGEYLPERWRPDA 490
           TVN+C     +   +GE +P RWR DA
Sbjct: 210 TVNQCPPGEMWKCGSGECIPSRWRCDA 236


>U40954-7|AAB52654.2|  145|Caenorhabditis elegans Hypothetical
           protein ZK813.1 protein.
          Length = 145

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = -2

Query: 291 NERPFYKLRKMFNHEARRRHNQITRKGSHAR 199
           N  PFYK RK  +H  RRRH +  R G H R
Sbjct: 38  NGNPFYKPRK--HH--RRRHGRRGRHGRHGR 64


>AF067617-4|AAC17557.1|  381|Caenorhabditis elegans Hypothetical
           protein T04D1.2 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
 Frame = -2

Query: 462 YLSYL**DEINHHVFVK*STVSLDHLEYKTPH------YDFAFKSSIIYSVAKKKYHQ*I 301
           Y+SY    E+ H++ V  +T S+DHL+  T        Y   FK  +       ++H+  
Sbjct: 159 YMSYENKKELEHYLNVLYNTFSIDHLDLMTDREKIFGDYRKVFKHPLFRKCHYVEFHE-P 217

Query: 300 NSTNERPFYKLRKMFN-HEARRRHNQ 226
           +  + +    L+KMF+ H+   R +Q
Sbjct: 218 SKFSTKDLENLQKMFDLHKFYARCDQ 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,157,472
Number of Sequences: 27780
Number of extensions: 299653
Number of successful extensions: 499
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)