Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0695
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17020.1 68414.m02067 oxidoreductase, 2OG-Fe(II) oxygenase fa...    31   0.73 
At5g66280.1 68418.m08357 GDP-D-mannose 4,6-dehydratase, putative...    28   5.1  
At3g51160.1 68416.m05602 GDP-D-mannose-4,6-dehydratase (MUR1) al...    28   5.1  
At4g03600.1 68417.m00495 expressed protein                             27   9.0  

>At1g17020.1 68414.m02067 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to flavonol synthase [Petunia x
           hybrida][GI:311658], leucoanthocyanidin dioxygenase
           [Malus domestica][SP|P51091]; contains PF03171
           2OG-Fe(II) oxygenase superfamily domain
          Length = 358

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 363 HNVGFYIQGGPVKRLITSQKHDGLFRLIISNSNINVFA 476
           HNVG Y + GP K L+  QK     RL +   N  +F+
Sbjct: 307 HNVGMYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFS 344


>At5g66280.1 68418.m08357 GDP-D-mannose 4,6-dehydratase, putative
           strong similarity to GDP-D-mannose-4,6-dehydratase
           [Arabidopsis thaliana] GI:1764100
          Length = 361

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -2

Query: 261 MFNHEARRR-HNQITRKGSHARPKIIICLQT 172
           +FNHE+ RR  N +TRK + A  +I + LQT
Sbjct: 200 LFNHESPRRGENFVTRKITRALGRIKVGLQT 230


>At3g51160.1 68416.m05602 GDP-D-mannose-4,6-dehydratase (MUR1)
           almost identical to GDP-D-mannose-4,6-dehydratase (MUR1)
           GI:1764100 from [Arabidopsis thaliana]
          Length = 373

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -2

Query: 261 MFNHEARRR-HNQITRKGSHARPKIIICLQT 172
           +FNHE+ RR  N +TRK + A  +I + LQT
Sbjct: 212 LFNHESPRRGENFVTRKITRALGRIKVGLQT 242


>At4g03600.1 68417.m00495 expressed protein
          Length = 162

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 541 FLVSNRRVFAGAMAPRRSVTRNAKTFIFELLIIRRNKPSCFCEVINRF 398
           F   +RRV    +   R +TR    F+F++L+   N  + FC V+  F
Sbjct: 108 FFGKSRRVL---VVEGRKITREVVGFVFKVLLKEGNVVAAFCAVLAYF 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,096,803
Number of Sequences: 28952
Number of extensions: 271134
Number of successful extensions: 497
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)