Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0694
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0878 + 12088119-12088233,12088511-12088608,12088689-120887...    31   1.2  
06_03_1219 - 28491185-28494415                                         28   8.3  

>03_02_0878 +
           12088119-12088233,12088511-12088608,12088689-12088795,
           12088900-12088974,12089053-12089124,12089221-12089382,
           12089476-12089550,12089635-12089706,12089813-12089884,
           12090150-12090224,12090329-12090400,12090491-12090625,
           12090712-12091187,12091270-12091779,12091876-12092111,
           12092200-12092712
          Length = 954

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 379 NCGLFSKNTTALWAGCTRQRNCPTKLDLKTKLAFVTLVRNQQS 507
           N G   + TT + AGC+   N P +L    KL+++ L  NQ S
Sbjct: 122 NIGNLKQLTTLILAGCSFHGNIPDELGSLPKLSYMALNSNQFS 164


>06_03_1219 - 28491185-28494415
          Length = 1076

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 453 FRGTIPLACASCP 415
           FRGTIP  C SCP
Sbjct: 189 FRGTIPSLCVSCP 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,973,423
Number of Sequences: 37544
Number of extensions: 258188
Number of successful extensions: 453
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)