Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0694
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13370.1 68418.m01540 auxin-responsive GH3 family protein sim...    30   1.7  
At1g59790.1 68414.m06732 cullin-related low similarity to Hs-CUL...    29   2.3  
At3g16210.1 68416.m02046 F-box family protein contains F-box dom...    28   5.2  

>At5g13370.1 68418.m01540 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 595

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 458 SNFVGQFRWRVHPAHRAVVFFENRPQFC 375
           + F G +R+RV    RA  F+ N P FC
Sbjct: 396 TTFSGLYRYRVGDVLRATGFYNNAPHFC 423


>At1g59790.1 68414.m06732 cullin-related low similarity to Hs-CUL-1
           [Homo sapiens] GI:1381142
          Length = 374

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 128 YYLYTINCM*NNVL*KYTATYLLCLYLFQGFY 33
           + +Y I C  N+ L        +C+YLFQ +Y
Sbjct: 341 FIVYVIECFQNHTLFHKVRVLFMCVYLFQQYY 372


>At3g16210.1 68416.m02046 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 360

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +1

Query: 388 LFSKNTTALWAGCTRQRNCPTKLDLKTKLAFVTLVRNQQSW 510
           ++++  T+ W G T Q+ C T+ ++  K   ++++    SW
Sbjct: 223 VYNQGVTSSWLGVTSQKLCITEYEMCKKEIRISVMEKTGSW 263


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,837,203
Number of Sequences: 28952
Number of extensions: 231378
Number of successful extensions: 356
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)