Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0693
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...   142   3e-35
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...   142   3e-35
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...   142   3e-35
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    48   2e-06
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    29   0.58 
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   4.1  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   5.4  
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos...    25   7.1  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score =  142 bits (345), Expect = 3e-35
 Identities = 62/90 (68%), Positives = 74/90 (82%)
 Frame = +2

Query: 2   NNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVN 181
           N+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK  E +
Sbjct: 329 NDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEES 388

Query: 182 PKSIKSGDAAIVNLVPSKPLCVESSRNSHP 271
           PK +KSGDA I  +VPSKP+CVE+  +  P
Sbjct: 389 PKFVKSGDACIAKMVPSKPMCVEAFTDYAP 418



 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 24/32 (75%), Positives = 26/32 (81%), Gaps = 1/32 (3%)
 Frame = +1

Query: 241 MC-RVLQEFPPLGRFAVRDMRQTVAVGVIKAV 333
           MC     ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 408 MCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score =  142 bits (345), Expect = 3e-35
 Identities = 62/90 (68%), Positives = 74/90 (82%)
 Frame = +2

Query: 2   NNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVN 181
           N+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK  E +
Sbjct: 329 NDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEES 388

Query: 182 PKSIKSGDAAIVNLVPSKPLCVESSRNSHP 271
           PK +KSGDA I  +VPSKP+CVE+  +  P
Sbjct: 389 PKFVKSGDACIAKMVPSKPMCVEAFTDYAP 418



 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 24/32 (75%), Positives = 26/32 (81%), Gaps = 1/32 (3%)
 Frame = +1

Query: 241 MC-RVLQEFPPLGRFAVRDMRQTVAVGVIKAV 333
           MC     ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 408 MCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score =  142 bits (345), Expect = 3e-35
 Identities = 62/90 (68%), Positives = 74/90 (82%)
 Frame = +2

Query: 2   NNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVN 181
           N+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIACKFAE+ EK+DRR+GK  E +
Sbjct: 329 NDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEES 388

Query: 182 PKSIKSGDAAIVNLVPSKPLCVESSRNSHP 271
           PK +KSGDA I  +VPSKP+CVE+  +  P
Sbjct: 389 PKFVKSGDACIAKMVPSKPMCVEAFTDYAP 418



 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 24/32 (75%), Positives = 26/32 (81%), Gaps = 1/32 (3%)
 Frame = +1

Query: 241 MC-RVLQEFPPLGRFAVRDMRQTVAVGVIKAV 333
           MC     ++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 408 MCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 25/82 (30%), Positives = 40/82 (48%)
 Frame = +2

Query: 5   NPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNP 184
           NP      F AQ+ +L  P  ++ GY+ V+  HTA     FA++  K+D +T + ++  P
Sbjct: 552 NPVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLD-KTNRKSKKPP 610

Query: 185 KSIKSGDAAIVNLVPSKPLCVE 250
                G   I  L    P+C+E
Sbjct: 611 MFATKGMKIIAELETQTPVCME 632



 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 256 QEFPPLGRFAVRDMRQTVAVG-VIKAVN 336
           +++  +GRF +RD   TVAVG V+K ++
Sbjct: 635 EDYQYMGRFTLRDQGTTVAVGKVVKILD 662


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 256 QEFPPLGRFAVRDMRQTVAVGVIK 327
           +E P LGRF +R    TVA G++K
Sbjct: 566 EECPALGRFILRRSGDTVAAGIVK 589


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -2

Query: 392 PLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWRTL 246
           P  + ++   T+PP  S+  T  + PT ++   + TA      NS  T+
Sbjct: 73  PSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTV 121


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 140 EKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESSRNSHPSV 277
           EKV+ +    + +  +S+K  D  I N   S  + +E+ +N+ P +
Sbjct: 36  EKVEAKALSRSRLKNQSVKKTDLRITNDYSSLFVSIENKKNTIPDI 81


>SPAC631.01c |acp2||F-actin capping protein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 268

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 213 MAASPDLMDFGLTSVDLPVRRSTFS 139
           ++ +PDL D  L+SVD P++ +T S
Sbjct: 27  LSVAPDLADVLLSSVDQPLKVNTCS 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,389
Number of Sequences: 5004
Number of extensions: 48983
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)