Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0693
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 122 2e-28
03_01_0547 + 4093196-4093657,4094267-4095148 122 2e-28
03_01_0544 + 4082528-4082989,4083585-4084466 122 2e-28
03_01_0543 + 4076981-4077442,4078145-4079026 122 2e-28
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 31 0.79
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270... 31 1.0
03_05_0824 + 27980191-27980243,27980633-27980671,27980974-279820... 29 2.4
10_08_0947 + 21749062-21749411,21750471-21750759 29 4.2
01_02_0102 - 11148219-11148563,11148650-11149534 28 7.4
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 122 bits (295), Expect = 2e-28
Identities = 51/84 (60%), Positives = 68/84 (80%)
Frame = +2
Query: 2 NNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVN 181
++P K AA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E
Sbjct: 319 DDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKE 378
Query: 182 PKSIKSGDAAIVNLVPSKPLCVES 253
PK +K+GDA +V ++P+KP+ VE+
Sbjct: 379 PKFLKNGDAGMVKMIPTKPMVVET 402
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +1
Query: 259 EFPPLGRFAVRDMRQTVAVGVIKAV 333
E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 405 EYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 122 bits (295), Expect = 2e-28
Identities = 51/84 (60%), Positives = 68/84 (80%)
Frame = +2
Query: 2 NNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVN 181
++P K AA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E
Sbjct: 319 DDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKE 378
Query: 182 PKSIKSGDAAIVNLVPSKPLCVES 253
PK +K+GDA +V ++P+KP+ VE+
Sbjct: 379 PKFLKNGDAGMVKMIPTKPMVVET 402
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +1
Query: 259 EFPPLGRFAVRDMRQTVAVGVIKAV 333
E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 405 EYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 122 bits (295), Expect = 2e-28
Identities = 51/84 (60%), Positives = 68/84 (80%)
Frame = +2
Query: 2 NNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVN 181
++P K AA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E
Sbjct: 319 DDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKE 378
Query: 182 PKSIKSGDAAIVNLVPSKPLCVES 253
PK +K+GDA +V ++P+KP+ VE+
Sbjct: 379 PKFLKNGDAGMVKMIPTKPMVVET 402
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +1
Query: 259 EFPPLGRFAVRDMRQTVAVGVIKAV 333
E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 405 EYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 122 bits (295), Expect = 2e-28
Identities = 51/84 (60%), Positives = 68/84 (80%)
Frame = +2
Query: 2 NNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVN 181
++P K AA FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E
Sbjct: 319 DDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKE 378
Query: 182 PKSIKSGDAAIVNLVPSKPLCVES 253
PK +K+GDA +V ++P+KP+ VE+
Sbjct: 379 PKFLKNGDAGMVKMIPTKPMVVET 402
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +1
Query: 259 EFPPLGRFAVRDMRQTVAVGVIKAV 333
E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 405 EYPPLGRFAVRDMRQTVAVGVIKNV 429
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 31.1 bits (67), Expect = 0.79
Identities = 12/50 (24%), Positives = 28/50 (56%)
Frame = +2
Query: 113 IACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESSRN 262
++ +I ++++TGK+++ P+ + S A++ + K +CVE N
Sbjct: 577 VSASMVKILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSN 626
>06_03_1067 -
27326167-27326295,27326572-27326656,27326993-27327033,
27327274-27327333,27327843-27327962,27328842-27329114,
27329186-27329257,27329798-27329860,27329957-27330139,
27330544-27330660,27330734-27332683,27332770-27332907,
27333003-27333284,27334650-27335522
Length = 1461
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 392 PLVAFSAALVTLPPPA-SLKLTALMTPTATVCLMSRTAK-RPRGGNSWRTLH 243
P A L +L PP + T+L+TP A L+S + R RG +S+ LH
Sbjct: 40 PRAAILRWLASLSPPCRAAAATSLLTPAAAAALLSMLRRLRARGHSSFFVLH 91
>03_05_0824 +
27980191-27980243,27980633-27980671,27980974-27982023,
27983097-27983262,27983439-27983549,27983637-27983688,
27984691-27984859,27985604-27985883
Length = 639
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +2
Query: 50 LNHPGQISNGYTPVLDCHTAHIACKFAEIKE-KVDRRTGKSTEVNPKSIKSGDAAIVNLV 226
L+ P +ISNG TPV D ++ C+ K D + + +EV+ S+ + L+
Sbjct: 271 LHRPRRISNGTTPVFDDNSGSHLCQDVSSKSFSADDQCLQDSEVDKDSVYEREYVQGVLI 330
Query: 227 PSKPLCVESSRNSHPSV 277
+P E SR S +
Sbjct: 331 MEQPK-NEDSRMSESGI 346
>10_08_0947 + 21749062-21749411,21750471-21750759
Length = 212
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 240 YV*SPPGIPTPRSFCCP*HEADSCC 314
Y+ PP + PR CCP + D+ C
Sbjct: 170 YLEQPPAVDLPRLHCCPSDQDDAGC 194
>01_02_0102 - 11148219-11148563,11148650-11149534
Length = 409
Score = 27.9 bits (59), Expect = 7.4
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = -2
Query: 458 FR*MKYR--SCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRT 285
F+ MK R + N V S S+FLP+V F+A PPP ALM V + R+
Sbjct: 259 FKVMKERMYKIISNAIVVSYSHFLPVVPFNA---FNPPPPEF---ALMKSDPPV-VQRRS 311
Query: 284 AKRPRG-GNSWRTLHIEA 234
R G G+ +H EA
Sbjct: 312 PHRQTGQGSGGPKIHFEA 329
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,433,897
Number of Sequences: 37544
Number of extensions: 329910
Number of successful extensions: 982
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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