Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0693
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 137 8e-33
SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015) 33 0.20
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 31 0.81
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09) 28 7.5
SB_39538| Best HMM Match : VWA (HMM E-Value=0) 27 9.9
SB_22891| Best HMM Match : Ank (HMM E-Value=0) 27 9.9
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 137 bits (331), Expect = 8e-33
Identities = 58/84 (69%), Positives = 71/84 (84%)
Frame = +2
Query: 2 NNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVN 181
NNPPK FTAQVIV+NHPG+I GY+PVLDCHTAHIACKF ++ EK+DRR+GK E N
Sbjct: 190 NNPPKPCKSFTAQVIVMNHPGEIHAGYSPVLDCHTAHIACKFDKLLEKIDRRSGKKLEDN 249
Query: 182 PKSIKSGDAAIVNLVPSKPLCVES 253
PK IK+GDAA+V ++PSKP+CVE+
Sbjct: 250 PKMIKTGDAAMVEMIPSKPMCVET 273
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/33 (75%), Positives = 28/33 (84%), Gaps = 1/33 (3%)
Frame = +1
Query: 241 MC-RVLQEFPPLGRFAVRDMRQTVAVGVIKAVN 336
MC EFPPLGRFAVRDM+QTVAVGVIK+V+
Sbjct: 269 MCVETFTEFPPLGRFAVRDMKQTVAVGVIKSVD 301
>SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)
Length = 921
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +2
Query: 410 C*QHNFSYNCDTSFTERCFEGKKGYKLIPFLYFYKACNVTLFYN-LYKVIHNISETFCYD 586
C N + D + C K+G + Y KAC L Y+ + H E +C++
Sbjct: 250 CGSCNRIFAGDECYERHCVPNKEGNSICSKYYRCKACKKVLAYSKRHPRDHKCGEVYCFN 309
Query: 587 CK 592
CK
Sbjct: 310 CK 311
>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 31.1 bits (67), Expect = 0.81
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +2
Query: 110 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 238
HIA K E+K D ++ K+ ++ PK++ SGD ++VP++P
Sbjct: 74 HIAKKL-EVK---DSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 31.1 bits (67), Expect = 0.81
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = -1
Query: 198 DLMDF--GLTSVDLPVRRSTFSL-ISANLQAMWAVWQSK 91
DL +F G+T++ LP ST + NLQ W +WQSK
Sbjct: 2456 DLGNFIKGITTIPLPSSSSTPIIDFEVNLQGEWILWQSK 2494
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 31.1 bits (67), Expect = 0.81
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 146 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVE 250
+D++TGK + P+ IK AI L +C+E
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIE 530
>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 656
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 71 SNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLV-PSKP 238
+N P+L+ T +A K D T + +VN KS G +I+ P+ P
Sbjct: 586 ANALNPLLEHRTEKVALSKPMSNGKEDLNTETTADVNKKSCADGSDSIIGTTDPNSP 642
>SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)
Length = 666
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -3
Query: 298 SCHGQQNDRGVGIPGGLYT*RLGRYQVDNGCISRLDGFWVDFSRFTSTTVN 146
S GQQND + L + Q+D CI RL ++ R ST +N
Sbjct: 476 SRRGQQNDEFAELSHQLPLPKSISSQLDRLCIMRLTNSYIKIKRLLSTMMN 526
>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
Length = 3208
Score = 27.5 bits (58), Expect = 9.9
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Frame = +2
Query: 23 ADFTAQVIVLNHPGQISN---GYTPVLD--CHTAHIACKFAEIKEKVDRRTGKSTEVNPK 187
A T VL H Q+++ T V D H +A A + D TG S E+
Sbjct: 2693 AHVTQVADVLAHVTQVADVLAQVTQVADILAHMTQVADVLAHVVNSADDVTGPSKELQDA 2752
Query: 188 SIKSGDAAIVNLVPSKPLCVESSRNSHPSVVLL 286
S+K A V LCV S + + V++
Sbjct: 2753 SVKVISAGACADVSKPELCVIGSPPTCQNAVMM 2785
>SB_22891| Best HMM Match : Ank (HMM E-Value=0)
Length = 429
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = -1
Query: 294 VTDSKTTEGWEFLEDSTHRGLEG-TKLTMAASPD---LMDFGLTSVDLPVRRSTFSLISA 127
+ D+++ +GW L ++H G E KL + + L D G T++ L + R S I
Sbjct: 39 LVDARSEDGWTPLHVASHYGRESFVKLLIESKAQVDALSDKGTTALQLAIIRERTSCIKV 98
Query: 126 NLQA 115
L++
Sbjct: 99 LLES 102
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = -1
Query: 294 VTDSKTTEGWEFLEDSTHRGLEG-TKLTMAASPD---LMDFGLTSVDLPVRRSTFSLISA 127
+ D+++ +GW L ++H G E KL + + L D G T++ L + R S I
Sbjct: 215 LVDARSEDGWTPLHVASHYGRESFVKLLIESKAQVDALSDKGTTALQLAIIRERTSCIKV 274
Query: 126 NLQA 115
L++
Sbjct: 275 LLES 278
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,027,529
Number of Sequences: 59808
Number of extensions: 382207
Number of successful extensions: 1135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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