Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0693
(648 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 140 8e-34
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 140 8e-34
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 140 8e-34
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 37 0.014
Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical pr... 29 2.8
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 29 3.8
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 29 3.8
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 29 3.8
U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chai... 28 6.6
Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical pr... 27 8.7
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 140 bits (339), Expect = 8e-34
Identities = 64/89 (71%), Positives = 72/89 (80%)
Frame = +2
Query: 5 NPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNP 184
+P K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E P
Sbjct: 298 DPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFP 357
Query: 185 KSIKSGDAAIVNLVPSKPLCVESSRNSHP 271
K +KSGDA IV L+P+KPLCVES + P
Sbjct: 358 KFLKSGDAGIVELIPTKPLCVESFTDYAP 386
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/25 (84%), Positives = 24/25 (96%)
Frame = +1
Query: 259 EFPPLGRFAVRDMRQTVAVGVIKAV 333
++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 383 DYAPLGRFAVRDMRQTVAVGVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 140 bits (339), Expect = 8e-34
Identities = 64/89 (71%), Positives = 72/89 (80%)
Frame = +2
Query: 5 NPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNP 184
+P K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E P
Sbjct: 332 DPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFP 391
Query: 185 KSIKSGDAAIVNLVPSKPLCVESSRNSHP 271
K +KSGDA IV L+P+KPLCVES + P
Sbjct: 392 KFLKSGDAGIVELIPTKPLCVESFTDYAP 420
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/25 (84%), Positives = 24/25 (96%)
Frame = +1
Query: 259 EFPPLGRFAVRDMRQTVAVGVIKAV 333
++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 417 DYAPLGRFAVRDMRQTVAVGVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 140 bits (339), Expect = 8e-34
Identities = 64/89 (71%), Positives = 72/89 (80%)
Frame = +2
Query: 5 NPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNP 184
+P K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E P
Sbjct: 332 DPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFP 391
Query: 185 KSIKSGDAAIVNLVPSKPLCVESSRNSHP 271
K +KSGDA IV L+P+KPLCVES + P
Sbjct: 392 KFLKSGDAGIVELIPTKPLCVESFTDYAP 420
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/25 (84%), Positives = 24/25 (96%)
Frame = +1
Query: 259 EFPPLGRFAVRDMRQTVAVGVIKAV 333
++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 417 DYAPLGRFAVRDMRQTVAVGVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = +2
Query: 29 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDA 208
F A+V+VL H I++GY+ VL +A + +D++TG+ K +K +
Sbjct: 431 FDAEVLVLEHRSIIASGYSCVLHIQSAVEEVTVKGVIATIDKKTGEKKRA--KFVKQDEK 488
Query: 209 AIVNLVPSKPLCVE 250
I+ L +P +E
Sbjct: 489 CIMRLESPEPFVLE 502
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/27 (51%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = +1
Query: 256 QEFPPLGRFAVRDMRQTVAVG-VIKAV 333
+E+P LGRF +RD +T+A+G V+K V
Sbjct: 505 KEYPYLGRFTLRDEGKTIAIGKVLKVV 531
>Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical
protein F57B1.9a protein.
Length = 357
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -2
Query: 449 MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLM 294
M Y +C ++N Y L ++A+V LPPP ++ + ++ A C++
Sbjct: 188 MMYNNCRYRYSLNVLHY--ELYCQTSAVVNLPPPKAISIMEIVIQFAIPCII 237
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 92 LDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESSRNS 265
L C + C+ + +K+K + T KSTE + + G+ IV L + ES R S
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTET--ERLLQGE--IVALQKEVSIVSESLRKS 510
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 92 LDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESSRNS 265
L C + C+ + +K+K + T KSTE + + G+ IV L + ES R S
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTET--ERLLQGE--IVALQKEVSIVSESLRKS 510
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 92 LDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESSRNS 265
L C + C+ + +K+K + T KSTE + + G+ IV L + ES R S
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTET--ERLLQGE--IVALQKEVSIVSESLRKS 510
>U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chain
(clathrin associatedcomplex) protein 2 protein.
Length = 142
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 503 YFYKACNVTLFYNLYKVIHNISETF 577
YF+ C + L +N YKV + E F
Sbjct: 94 YFHNVCELDLVFNFYKVYTVVDEMF 118
>Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical
protein T23G5.3 protein.
Length = 262
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -2
Query: 395 LPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNS 258
+P+V + L PPP L +LM P TV + R K P G NS
Sbjct: 129 VPIVPRNLLLSKPPPPPPPPLPSLMQPKDTVQIPMR--KPPTGRNS 172
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,097,129
Number of Sequences: 27780
Number of extensions: 291391
Number of successful extensions: 811
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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