Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0693
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 124 4e-29
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 124 4e-29
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 124 4e-29
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 124 4e-29
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 97 9e-21
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 42 3e-04
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 34 0.071
At3g44350.1 68416.m04765 no apical meristem (NAM) family protein... 29 2.7
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 28 4.7
At2g04740.1 68415.m00484 ankyrin repeat family protein contains ... 28 6.1
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ... 27 8.1
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 124 bits (300), Expect = 4e-29
Identities = 52/84 (61%), Positives = 69/84 (82%)
Frame = +2
Query: 2 NNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVN 181
++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E
Sbjct: 319 DDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKE 378
Query: 182 PKSIKSGDAAIVNLVPSKPLCVES 253
PK +K+GDA +V + P+KP+ VE+
Sbjct: 379 PKFLKNGDAGMVKMTPTKPMVVET 402
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/26 (88%), Positives = 26/26 (100%)
Frame = +1
Query: 259 EFPPLGRFAVRDMRQTVAVGVIKAVN 336
E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 405 EYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 124 bits (300), Expect = 4e-29
Identities = 52/84 (61%), Positives = 69/84 (82%)
Frame = +2
Query: 2 NNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVN 181
++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E
Sbjct: 319 DDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKE 378
Query: 182 PKSIKSGDAAIVNLVPSKPLCVES 253
PK +K+GDA +V + P+KP+ VE+
Sbjct: 379 PKFLKNGDAGMVKMTPTKPMVVET 402
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/26 (88%), Positives = 26/26 (100%)
Frame = +1
Query: 259 EFPPLGRFAVRDMRQTVAVGVIKAVN 336
E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 405 EYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 124 bits (300), Expect = 4e-29
Identities = 52/84 (61%), Positives = 69/84 (82%)
Frame = +2
Query: 2 NNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVN 181
++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E
Sbjct: 319 DDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKE 378
Query: 182 PKSIKSGDAAIVNLVPSKPLCVES 253
PK +K+GDA +V + P+KP+ VE+
Sbjct: 379 PKFLKNGDAGMVKMTPTKPMVVET 402
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/26 (88%), Positives = 26/26 (100%)
Frame = +1
Query: 259 EFPPLGRFAVRDMRQTVAVGVIKAVN 336
E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 405 EYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 124 bits (300), Expect = 4e-29
Identities = 52/84 (61%), Positives = 69/84 (82%)
Frame = +2
Query: 2 NNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVN 181
++P KGAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI K+DRR+GK E
Sbjct: 319 DDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKE 378
Query: 182 PKSIKSGDAAIVNLVPSKPLCVES 253
PK +K+GDA +V + P+KP+ VE+
Sbjct: 379 PKFLKNGDAGMVKMTPTKPMVVET 402
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/26 (88%), Positives = 26/26 (100%)
Frame = +1
Query: 259 EFPPLGRFAVRDMRQTVAVGVIKAVN 336
E+PPLGRFAVRDMRQTVAVGVIK+V+
Sbjct: 405 EYPPLGRFAVRDMRQTVAVGVIKSVD 430
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 97.1 bits (231), Expect = 9e-21
Identities = 41/68 (60%), Positives = 53/68 (77%)
Frame = +2
Query: 50 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVP 229
+NH GQI NGYTPVLDCHT+HIA KF+EI K+D RTG E PK +K+ +AAI+N+ P
Sbjct: 1 MNHLGQIKNGYTPVLDCHTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTP 60
Query: 230 SKPLCVES 253
+KP+ VE+
Sbjct: 61 TKPMVVEA 68
Score = 47.6 bits (108), Expect = 7e-06
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +1
Query: 262 FPPLGRFAVRDMRQTVAVGVIKAV 333
+PPLGRFA+RDMRQTV VGVIK+V
Sbjct: 72 YPPLGRFAIRDMRQTVGVGVIKSV 95
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +2
Query: 5 NPPKGAADFTAQVIVLN--HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 178
NP +F AQ+ +L + GY +L H C+ E+K ++D +T K +
Sbjct: 414 NPVPAVTEFVAQLQILELLDNAIFTAGYKAILHIHAVVEECEIIELKSQIDLKTRKPMKK 473
Query: 179 NPKSIKSGDAAIVNLVPSKPLCVE 250
+K+G A + + + +C+E
Sbjct: 474 KVLFVKNGAAVVCRIQVTNSICIE 497
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 214 CQLGTFQASMCRVLQEFPPLGRFAVRDMRQTVAVGVI 324
C++ + +FP LGRF +R +T+AVG +
Sbjct: 486 CRIQVTNSICIEKFSDFPQLGRFTLRTEGKTIAVGKV 522
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 34.3 bits (75), Expect = 0.071
Identities = 21/86 (24%), Positives = 38/86 (44%)
Frame = +2
Query: 8 PPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPK 187
P A V+VL I G H A A ++ +D +TG+ T+ +P+
Sbjct: 555 PVSVATHLELMVLVLEGATPILLGSQLEFHVHHAKEAATVVKLVAMLDPKTGQPTKKSPR 614
Query: 188 SIKSGDAAIVNLVPSKPLCVESSRNS 265
+ + +A++ + P+CVE+ S
Sbjct: 615 CLTAKQSAMLEVSLQNPVCVETFSES 640
>At3g44350.1 68416.m04765 no apical meristem (NAM) family protein
Tobacco elicitor-responsive gene (TERN), NAC-domain
protein, Nicotiana tabacum, EMBL:AB021178
Length = 228
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 288 DSKTTEGWEFLEDSTHRGLE-GTKLTMAASPDLMDFGLTSVDLPVRRSTFS 139
D + TE + + G+E ++ T++ SP+ G VDLPV +T +
Sbjct: 155 DRRPTEAYAIERNLPSNGVETSSRATISTSPETSHSGGNQVDLPVNATTIT 205
>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 536
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 122 KFAEIKEKVDRRTGKSTEVNPKSI 193
+F + KEK+DR GK E+N K +
Sbjct: 258 RFPKPKEKIDREGGKPLEINVKKL 281
>At2g04740.1 68415.m00484 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 578
Score = 27.9 bits (59), Expect = 6.1
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -2
Query: 488 VCSPFFLRNTFR*MKYRS-CMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPT 312
+C L + + +K R C+ A N + F+ F A L+TLPPP+ P+
Sbjct: 453 LCQWLVLSDMYGVLKIREYCLDLVACNFEA-FVETHEFRAMLLTLPPPSGDSSLRTTVPS 511
Query: 311 ATVCLMS 291
A +M+
Sbjct: 512 APGAMMT 518
>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 725
Score = 27.5 bits (58), Expect = 8.1
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = +2
Query: 431 YNCD---TSFTERCFEGKKGYKLIPFLYFYKACNVTLFYNLYKVIHNI--SETFCYDCKL 595
Y CD + C GK Y L P F V LFY ++ N S FCY C+L
Sbjct: 600 YTCDYCMITLHVNCLLGKDIY-LKPCHIF----KVGLFYKEVEIARNDGNSRLFCYICRL 654
Query: 596 KC 601
+C
Sbjct: 655 RC 656
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,244,246
Number of Sequences: 28952
Number of extensions: 264554
Number of successful extensions: 716
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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