Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0692
         (676 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O61697 Cluster: Putative beta-ureidopropionase; n=1; Ma...    42   0.010
UniRef50_Q1DN86 Cluster: Putative uncharacterized protein; n=3; ...    35   1.6  
UniRef50_Q3E4G7 Cluster: Putative uncharacterized protein; n=1; ...    34   2.7  
UniRef50_Q6NP10 Cluster: LD13390p; n=7; Eukaryota|Rep: LD13390p ...    33   6.3  
UniRef50_Q29IG8 Cluster: GA11166-PA; n=2; pseudoobscura subgroup...    33   6.3  

>UniRef50_O61697 Cluster: Putative beta-ureidopropionase; n=1;
           Manduca sexta|Rep: Putative beta-ureidopropionase -
           Manduca sexta (Tobacco hawkmoth) (Tobacco hornworm)
          Length = 185

 Score = 42.3 bits (95), Expect = 0.010
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
 Frame = +2

Query: 428 ELTSLDEVISNSLKGKELEEFNRIHYGE*TNVLCLSVPLLPKKPLA---MDLK*KLMIFL 598
           E  SL+ +I N+L G++L+EFNRI+YG   +   L V L      A    D +     F 
Sbjct: 3   ETQSLEAIIENNLSGRDLDEFNRIYYGRKNH---LEVKLKDSSLAAAKEADFEVAAYAFP 59

Query: 599 QEKKNAGKPRIVRLG 643
            +K+    PRIV++G
Sbjct: 60  AKKEQTRPPRIVKVG 74


>UniRef50_Q1DN86 Cluster: Putative uncharacterized protein; n=3;
           Coccidioides immitis|Rep: Putative uncharacterized
           protein - Coccidioides immitis
          Length = 369

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 40  LSQYLRI*GRFF*PDQFHILVHWIRLKSKSKWQCKFQTTFIILQ-LLSTLHSADVPKIVQ 216
           LSQ +R    +F     H + +WIR+K + KW+  F T F   + L+ +   ++ P I Q
Sbjct: 161 LSQLVR--AHYFSKVDLHNIYYWIRIKEEDKWKTTFHTKFGSFEYLVMSFELSNTPAIFQ 218


>UniRef50_Q3E4G7 Cluster: Putative uncharacterized protein; n=1;
           Chloroflexus aurantiacus J-10-fl|Rep: Putative
           uncharacterized protein - Chloroflexus aurantiacus
           J-10-fl
          Length = 741

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +1

Query: 103 HWIRLKSKSKWQCKFQTTFIILQ-LLSTLHSADVPKIVQTSYSIE*LKRYTVYPYLVNIF 279
           HW++ K+  +W C      ++LQ L++  H   +P+  +    +  L+R    P  V   
Sbjct: 35  HWLKGKTMLRWACYLADVPVVLQRLIAATHRVPLPRQAEAVCCLSVLRRAICRPEAVRTR 94

Query: 280 YILCT 294
           Y + T
Sbjct: 95  YFMLT 99


>UniRef50_Q6NP10 Cluster: LD13390p; n=7; Eukaryota|Rep: LD13390p -
           Drosophila melanogaster (Fruit fly)
          Length = 408

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +1

Query: 526 LFISSVAAQKAASNGFEIKAYDFPARKEECRETSHCKIRASYNILLAIST 675
           L + + A   A  NGF+IK Y F AR+E+ R+    ++ A  N ++  +T
Sbjct: 60  LELPTSAKDIAEQNGFDIKGYRFTAREEQTRKRRIVRVGAIQNSIVIPTT 109


>UniRef50_Q29IG8 Cluster: GA11166-PA; n=2; pseudoobscura subgroup|Rep:
            GA11166-PA - Drosophila pseudoobscura (Fruit fly)
          Length = 4919

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = -3

Query: 617  RHSSFLAGKS*AFISNPLLAAFWAATELINKAHWSILHSEF 495
            R  SF++G + A +S P +AA+ A TE   KAH  + H EF
Sbjct: 1478 RADSFISGLAEARLSEPPVAAWLALTERYCKAHNLMWHQEF 1518


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 590,396,302
Number of Sequences: 1657284
Number of extensions: 10848300
Number of successful extensions: 22464
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22462
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)