Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0692
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   1.9  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   10.0 
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   10.0 
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    25   10.0 

>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 449 VISNSLKGKELEEFNRIHYGE*T-NVLCLSVPLLPK 553
           V+ N+L  K LE+ NRI YG+    V+ LS  L+ K
Sbjct: 747 VLQNTLVAKNLEQANRIAYGKTRWRVVTLSGQLIDK 782


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 33  YLVIAILTNLRKIFLTRPISHLSSLDSFEIKIEVAVQI 146
           Y V A+L +    FL RP+ HLS    F ++I + +Q+
Sbjct: 722 YFVFALLYSFLS-FLQRPLGHLSLFSCF-LQILLLIQL 757


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 473 KELEEFNRIHYGE*TNVLCLSVPLLP 550
           K LE++ +  +G    VLC   P+LP
Sbjct: 100 KMLEKYKKCDFGHCPRVLCNGQPMLP 125


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -3

Query: 569 PLLAAFWAATELINKAHW 516
           P+ +A W++ EL++K +W
Sbjct: 319 PISSALWSSKELLSKDYW 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,620,880
Number of Sequences: 5004
Number of extensions: 52380
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)