Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0692
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_24193| Best HMM Match : Acetyltransf_1 (HMM E-Value=5.8e-08)        28   7.9  
SB_23246| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.3e-09)        28   7.9  

>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -1

Query: 124  LISNESNELRCEIGRVKKIFLKFVSIAITKYLFKVSNKPR 5
            L S+  N LRC+IG +K IF+  +S+ +   +F V  K R
Sbjct: 6697 LNSSRLNTLRCQIGGLKLIFVDEISM-VGNTMFNVQFKNR 6735


>SB_24193| Best HMM Match : Acetyltransf_1 (HMM E-Value=5.8e-08)
          Length = 281

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 79  PDQFHILVHWIRLKSKSKWQCKFQTTFIIL 168
           PD+ ++L H IRL  + KW+    T  +IL
Sbjct: 9   PDENNLLSHVIRLIDREKWRMSSNTCELIL 38


>SB_23246| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.3e-09)
          Length = 305

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 79  PDQFHILVHWIRLKSKSKWQCKFQTTFIIL 168
           PD+ ++L H IRL  + KW+    T  +IL
Sbjct: 9   PDENNLLSHVIRLIDREKWRMSSNTCELIL 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,237,115
Number of Sequences: 59808
Number of extensions: 332274
Number of successful extensions: 501
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)