Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0692
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48540.2 68414.m05428 leucine-rich repeat family protein            29   3.8  
At1g48540.1 68414.m05427 leucine-rich repeat family protein            29   3.8  
At1g76270.1 68414.m08856 expressed protein contains Pfam PF03138...    28   5.0  

>At1g48540.2 68414.m05428 leucine-rich repeat family protein 
          Length = 1051

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 403 NLQRNGFCRTHKFG*SNIKFIKG*RTRRV 489
           NL+ NG C  HK G   +K+++G  T+++
Sbjct: 490 NLECNGSCVDHKAGMDYMKYVEGNETQKI 518


>At1g48540.1 68414.m05427 leucine-rich repeat family protein 
          Length = 1063

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 403 NLQRNGFCRTHKFG*SNIKFIKG*RTRRV 489
           NL+ NG C  HK G   +K+++G  T+++
Sbjct: 490 NLECNGSCVDHKAGMDYMKYVEGNETQKI 518


>At1g76270.1 68414.m08856 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as '
           auxin-independent growth promoter -related' based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 572

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -1

Query: 121 ISNESNELRCEIGRVKKIFLKFVSIAITKYLFKVSNK 11
           +  + NE RC I RV  + LK  ++ + K+ +++SNK
Sbjct: 194 VPRKCNE-RCYINRVLPVLLKRHAVQLNKFDYRLSNK 229


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,964,135
Number of Sequences: 28952
Number of extensions: 246269
Number of successful extensions: 570
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)