Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0691
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    27   1.7  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   4.0  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    25   6.9  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   9.1  

>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 85  HGRQRLGSAPGIAEVHWRR*PPSDGP 8
           HGR RL    G+  V W + PP  GP
Sbjct: 68  HGR-RLERGGGVLRVEWAKQPPPSGP 92


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 59  GRAKPLPTVKVVPKLILYVL-VAFAHLLRQ*N-EFILKSLT 175
           G   PLPT KV P+L  + L +    L+ Q N EF+ + LT
Sbjct: 759 GSKNPLPTEKVTPRLFNFTLHLHPGTLIIQPNKEFVTQELT 799


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -1

Query: 409 FRWKAKIHSSKLSLRFFDRSNFSETLSFYQHLSCDTFLAEQDITLR 272
           + W  K +S KL+   FD+     TL+F + +  D    ++D  L+
Sbjct: 255 YYWSLKHNSEKLNTLIFDKDREPTTLTFRERV--DYSCLDEDYNLK 298


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 519 SKNVVSLFTIIARTE--EYEIFHTYREYREEVHNANFF 626
           +++VVS   I AR     YE    Y  YR+ VH+  FF
Sbjct: 114 NRHVVSPGPISARASFINYEEIDIYPIYRDPVHDFGFF 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,638,819
Number of Sequences: 5004
Number of extensions: 53671
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)