Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0691
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)                  28   5.5  
SB_47193| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_655| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-20)                   28   7.3  
SB_23574| Best HMM Match : efhand (HMM E-Value=2e-05)                  28   7.3  
SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11)                27   9.7  
SB_33651| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
          Length = 2072

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +2

Query: 254  KSSNSYTQRNVLFSQKRI---TRKMLVKAQCLGKIASIKESERELTRMYFS 397
            K  NSY +RN    +K +     +  +KA+   +I ++ E +REL R Y S
Sbjct: 908  KQQNSYEKRNEGLEKKLMDEANERTKIKAKYNDEIQTLIEEQRELVRKYES 958


>SB_47193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +1

Query: 433 NIYVTSQSVINKTFMPSHL--ILANLYIIREAK 525
           +IYV S S ++ T +P+H+  +    Y++RE K
Sbjct: 118 SIYVASPSYLSYTVLPAHMAPLTGGTYVLREDK 150


>SB_655| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-20)
          Length = 376

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 327 FTNIFLVIRFWLNKTLR 277
           F+NI  ++ FWLNK LR
Sbjct: 57  FSNIVTIVTFWLNKHLR 73


>SB_23574| Best HMM Match : efhand (HMM E-Value=2e-05)
          Length = 69

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 381 LECILAFQRNNNRVIGIKYLRH 446
           +EC   F RN N +IG   LRH
Sbjct: 8   MECFKVFDRNGNGLIGAAELRH 29


>SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
          Length = 828

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 383 RMYFSFPAEQ*SCNRH*IFTSRASRLLIKHLCR 481
           +MY   P     C R  +  +RAS  L  HLCR
Sbjct: 642 KMYQPIPGHHSHCTRTYVVLARASVALHSHLCR 674


>SB_33651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 254 KSSNSYTQRNVLFSQKRITRKMLVKAQCLGKIASIKESERELTRMY 391
           K+S  +T+      +   TR+ L  +Q L  I+ I +S +ELTR++
Sbjct: 76  KNSQEFTRTRKNSQEFTRTRRNLKNSQELAGISRIHKSSKELTRIH 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,001,937
Number of Sequences: 59808
Number of extensions: 365120
Number of successful extensions: 804
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)