Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0691
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.7  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    21   7.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   7.6  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   7.6  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   7.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +3

Query: 504 IYNT*SKNVVSLFTIIARTEEYEIFHTY 587
           +Y+T +   + +  ++ R   Y +FHTY
Sbjct: 225 VYSTGNFTCLEVVFVLKRRLGYYLFHTY 252


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 298 KTYHKKDVGKSSMSRKNCFDQRI*ERAYSNVF*LSSG 408
           K Y  KDV     ++K  FD  + +   S +  L SG
Sbjct: 11  KKYLSKDVFDQLKTKKTSFDSTLLDCIQSGIENLDSG 47


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 269 MNLNSLWGNVKRIIERFINVIYF 201
           M +  L  + KR I   +NV+YF
Sbjct: 62  MTVKELANSAKRDINDVLNVLYF 84


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 298 KTYHKKDVGKSSMSRKNCFDQRI*ERAYSNVF*LSSG 408
           K Y  KDV     ++K  FD  + +   S +  L SG
Sbjct: 27  KKYLSKDVFDQLKTKKTSFDSTLLDCIQSGIENLDSG 63


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 603 LLYILYRCGKFHTP 562
           L+Y + +CGKF  P
Sbjct: 72  LMYQIQQCGKFKEP 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,196
Number of Sequences: 438
Number of extensions: 3788
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)