Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0690
(622 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P38919 Cluster: Eukaryotic initiation factor 4A-III; n=... 134 2e-30
UniRef50_Q14240 Cluster: Eukaryotic initiation factor 4A-II; n=3... 130 3e-29
UniRef50_Q4T4A9 Cluster: Chromosome undetermined SCAF9757, whole... 98 2e-19
UniRef50_A5BNE7 Cluster: Putative uncharacterized protein; n=1; ... 96 7e-19
UniRef50_A0D232 Cluster: Chromosome undetermined scaffold_35, wh... 96 7e-19
UniRef50_Q4SP80 Cluster: Chromosome 15 SCAF14542, whole genome s... 93 5e-18
UniRef50_A5BYF4 Cluster: Putative uncharacterized protein; n=1; ... 91 1e-17
UniRef50_Q67NW1 Cluster: ATP-dependent RNA helicase; n=5; Firmic... 87 4e-16
UniRef50_P39517 Cluster: ATP-dependent RNA helicase DHH1; n=103;... 86 6e-16
UniRef50_Q5KJI2 Cluster: ATP-dependent RNA helicase DHH1; n=4; D... 83 5e-15
UniRef50_Q4T821 Cluster: Chromosome undetermined SCAF7914, whole... 81 2e-14
UniRef50_A2AAP7 Cluster: DEAD (Asp-Glu-Ala-Asp) box polypeptide ... 81 3e-14
UniRef50_Q1MY97 Cluster: DEAD/DEAH box helicase-like protein; n=... 81 3e-14
UniRef50_A0Z0M4 Cluster: ATP-dependent RNA helicase; n=1; marine... 80 5e-14
UniRef50_Q23U16 Cluster: DEAD/DEAH box helicase family protein; ... 80 5e-14
UniRef50_Q725W5 Cluster: ATP-dependent RNA helicase, DEAD/DEAH f... 79 8e-14
UniRef50_A0BEU9 Cluster: Chromosome undetermined scaffold_102, w... 79 8e-14
UniRef50_UPI0000566899 Cluster: UPI0000566899 related cluster; n... 79 1e-13
UniRef50_Q98RE0 Cluster: ATP-DEPENDENT RNA HELICASE; n=1; Mycopl... 79 1e-13
UniRef50_A4FZ46 Cluster: DEAD/DEAH box helicase domain protein; ... 79 1e-13
UniRef50_Q1QYG3 Cluster: DEAD/DEAH box helicase-like protein; n=... 78 1e-13
UniRef50_Q81VG0 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 77 3e-13
UniRef50_Q7UNV7 Cluster: ATP-dependent RNA helicase; n=2; Planct... 77 3e-13
UniRef50_Q0E2Q3 Cluster: Putative eukaryotic initiation factor 4... 77 3e-13
UniRef50_Q484Q1 Cluster: RNA helicase DeaD; n=1; Colwellia psych... 77 5e-13
UniRef50_UPI000065E01D Cluster: Homolog of Brachydanio rerio "Eu... 76 6e-13
UniRef50_Q8YXJ0 Cluster: ATP-dependent RNA helicase; n=11; Cyano... 75 1e-12
UniRef50_Q9KAA6 Cluster: ATP-dependent RNA helicase; n=5; Firmic... 75 1e-12
UniRef50_A5E6W6 Cluster: ATP-dependent rRNA helicase RRP3; n=4; ... 75 1e-12
UniRef50_Q5ZT20 Cluster: ATP-dependent RNA helicase; n=4; Legion... 74 2e-12
UniRef50_Q3AX69 Cluster: DEAD/DEAH box helicase-like; n=15; Cyan... 74 2e-12
UniRef50_A2TP65 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 74 2e-12
UniRef50_O26305 Cluster: ATP-dependent RNA helicase, eIF-4A fami... 74 2e-12
UniRef50_Q9KLE2 Cluster: ATP-dependent RNA helicase DeaD; n=35; ... 74 3e-12
UniRef50_Q7VFA9 Cluster: ATP-dependent RNA helicase DeaD; n=6; H... 73 4e-12
UniRef50_Q6MN67 Cluster: ATP-dependent RNA helicase; n=3; Deltap... 73 4e-12
UniRef50_A5UZK3 Cluster: DEAD/DEAH box helicase domain protein; ... 73 4e-12
UniRef50_Q8XKJ8 Cluster: ATP-dependent RNA helicase; n=12; Clost... 73 6e-12
UniRef50_A7HDE9 Cluster: DEAD/DEAH box helicase domain protein; ... 73 7e-12
UniRef50_Q8D7D0 Cluster: Superfamily II DNA and RNA helicase; n=... 72 1e-11
UniRef50_Q6MR64 Cluster: ATP-dependent RNA helicase; n=5; cellul... 72 1e-11
UniRef50_Q11QF9 Cluster: Inducible ATP-independent RNA helicase;... 72 1e-11
UniRef50_P0A9P8 Cluster: Cold-shock DEAD box protein A; n=54; Ga... 72 1e-11
UniRef50_Q26CN9 Cluster: ATP-dependent RNA helicase; n=1; Flavob... 71 2e-11
UniRef50_Q3AFI3 Cluster: ATP-dependent RNA helicase, DEAD box fa... 71 2e-11
UniRef50_P96614 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 71 2e-11
UniRef50_Q893G8 Cluster: ATP-dependent RNA helicase; n=4; Clostr... 71 3e-11
UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=... 71 3e-11
UniRef50_Q2WF63 Cluster: Putative uncharacterized protein; n=4; ... 71 3e-11
UniRef50_Q5GZA1 Cluster: ATP-dependent RNA helicase; n=6; Xantho... 70 4e-11
UniRef50_Q188H5 Cluster: Putative ATP-dependent RNA helicase; n=... 70 4e-11
UniRef50_Q11UP8 Cluster: ATP-dependent RNA helicase; n=1; Cytoph... 70 4e-11
UniRef50_Q55BR9 Cluster: Putative uncharacterized protein; n=1; ... 70 4e-11
UniRef50_A2EPG4 Cluster: DEAD/DEAH box helicase family protein; ... 70 4e-11
UniRef50_Q5L3G9 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 70 4e-11
UniRef50_UPI00015B4D43 Cluster: PREDICTED: hypothetical protein;... 70 5e-11
UniRef50_UPI0000499A01 Cluster: DEAD/DEAH box helicase; n=1; Ent... 70 5e-11
UniRef50_Q8R4Z5 Cluster: DEAD-box corepressor DP103 beta; n=5; T... 70 5e-11
UniRef50_Q9S531 Cluster: DEAD-box protein; n=4; Cystobacterineae... 70 5e-11
UniRef50_A6NQG8 Cluster: Putative uncharacterized protein; n=2; ... 70 5e-11
UniRef50_P38712 Cluster: ATP-dependent rRNA helicase RRP3; n=6; ... 70 5e-11
UniRef50_Q9UHI6 Cluster: Probable ATP-dependent RNA helicase DDX... 70 5e-11
UniRef50_UPI0000585111 Cluster: PREDICTED: hypothetical protein;... 69 7e-11
UniRef50_Q8D6Y8 Cluster: Superfamily II DNA and RNA helicase; n=... 69 7e-11
UniRef50_Q6F0U0 Cluster: ATP-dependent RNA helicase; n=1; Mesopl... 69 7e-11
UniRef50_Q39MK8 Cluster: DEAD/DEAH box helicase; n=10; Proteobac... 69 7e-11
UniRef50_A7JLA3 Cluster: ATP-dependent RNA helicase; n=20; Franc... 69 7e-11
UniRef50_Q49K88 Cluster: DEAD box RNA helicase; n=1; Toxoplasma ... 69 7e-11
UniRef50_A2DVG1 Cluster: DEAD/DEAH box helicase family protein; ... 69 7e-11
UniRef50_Q82T78 Cluster: RhlE; ATP-dependent RNA helicase RhlE; ... 69 9e-11
UniRef50_A6TX49 Cluster: DEAD/DEAH box helicase domain protein; ... 69 9e-11
UniRef50_A5FST0 Cluster: DEAD/DEAH box helicase domain protein; ... 69 9e-11
UniRef50_P25888 Cluster: Putative ATP-dependent RNA helicase rhl... 69 9e-11
UniRef50_P0C218 Cluster: Probable ATP-dependent RNA helicase DDX... 69 9e-11
UniRef50_P21693 Cluster: ATP-independent RNA helicase dbpA; n=19... 69 9e-11
UniRef50_Q3AZR1 Cluster: DEAD/DEAH box helicase-like; n=2; Synec... 69 1e-10
UniRef50_O66866 Cluster: ATP-dependent RNA helicase DeaD; n=1; A... 69 1e-10
UniRef50_A6VTY7 Cluster: DEAD/DEAH box helicase domain protein; ... 69 1e-10
UniRef50_A6DIU5 Cluster: Probable ATP dependent RNA helicase; n=... 69 1e-10
UniRef50_A4J5M3 Cluster: DEAD/DEAH box helicase domain protein; ... 69 1e-10
UniRef50_Q6AMK6 Cluster: Probable ATP-dependent RNA helicase; n=... 68 2e-10
UniRef50_Q5QY63 Cluster: ATP-dependent RNA helicase; n=3; Altero... 68 2e-10
UniRef50_Q01PH0 Cluster: DEAD/DEAH box helicase domain protein; ... 68 2e-10
UniRef50_A6TTG0 Cluster: DEAD/DEAH box helicase domain protein; ... 68 2e-10
UniRef50_Q87HW1 Cluster: ATP-dependent RNA helicase, DEAD box fa... 68 2e-10
UniRef50_Q81QF0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 68 2e-10
UniRef50_Q6MN50 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 68 2e-10
UniRef50_Q9LKL6 Cluster: DEAD box protein P68; n=5; Viridiplanta... 68 2e-10
UniRef50_Q8A2K2 Cluster: ATP-dependent RNA helicase; n=10; cellu... 67 3e-10
UniRef50_Q185X0 Cluster: ATP-dependent RNA helicase; n=3; Clostr... 67 3e-10
UniRef50_A7HKQ8 Cluster: DEAD/DEAH box helicase domain protein; ... 67 3e-10
UniRef50_A5G1U8 Cluster: DEAD/DEAH box helicase domain protein; ... 67 3e-10
UniRef50_Q3LWE1 Cluster: Translation initiation factor 4A2; n=1;... 67 3e-10
UniRef50_UPI0000D55AB0 Cluster: PREDICTED: similar to Probable A... 67 4e-10
UniRef50_Q64VR8 Cluster: ATP-dependent RNA helicase DeaD; n=14; ... 67 4e-10
UniRef50_Q1N6E2 Cluster: ATP-dependent RNA helicase; n=1; Oceano... 67 4e-10
UniRef50_Q0HYG8 Cluster: DEAD/DEAH box helicase domain protein; ... 67 4e-10
UniRef50_Q0HKH0 Cluster: DEAD/DEAH box helicase domain protein; ... 67 4e-10
UniRef50_A4BET4 Cluster: DEAD/DEAH box helicase-like protein; n=... 67 4e-10
UniRef50_A3WD13 Cluster: DNA and RNA helicase; n=2; Alphaproteob... 67 4e-10
UniRef50_A0KTC9 Cluster: DEAD/DEAH box helicase domain protein; ... 67 4e-10
UniRef50_Q4P3U9 Cluster: ATP-dependent rRNA helicase RRP3; n=20;... 67 4e-10
UniRef50_UPI0000DAE40A Cluster: hypothetical protein Rgryl_01000... 66 5e-10
UniRef50_O83749 Cluster: ATP-dependent RNA helicase; n=2; Trepon... 66 5e-10
UniRef50_Q4IZ16 Cluster: DEAD/DEAH box helicase:Helicase, C-term... 66 5e-10
UniRef50_Q2BP56 Cluster: Putative ATP-dependent RNA helicase; n=... 66 5e-10
UniRef50_Q18W60 Cluster: DEAD/DEAH box helicase-like; n=2; Desul... 66 5e-10
UniRef50_A4M6V6 Cluster: DEAD/DEAH box helicase domain protein; ... 66 5e-10
UniRef50_A4C0F9 Cluster: ATP-dependent RNA helicase; n=6; Bacter... 66 5e-10
UniRef50_A4V6K5 Cluster: DEAD box polypeptide 19 protein; n=3; P... 66 5e-10
UniRef50_Q55RL6 Cluster: Putative uncharacterized protein; n=2; ... 66 5e-10
UniRef50_UPI0001509D93 Cluster: DEAD/DEAH box helicase family pr... 66 6e-10
UniRef50_Q41FS1 Cluster: IMP dehydrogenase/GMP reductase:Helicas... 66 6e-10
UniRef50_Q15T34 Cluster: DEAD/DEAH box helicase-like; n=1; Pseud... 66 6e-10
UniRef50_Q8L4E9 Cluster: DEAD-box ATP-dependent RNA helicase 36;... 66 6e-10
UniRef50_UPI00015BD198 Cluster: UPI00015BD198 related cluster; n... 66 8e-10
UniRef50_Q0RTL3 Cluster: Cold-shock DeaD box ATP-dependent RNA h... 66 8e-10
UniRef50_O34750 Cluster: YfmL protein; n=5; Bacillus|Rep: YfmL p... 65 1e-09
UniRef50_A6DK15 Cluster: ATP-dependent RNA helicase, specific fo... 65 1e-09
UniRef50_A3ZWP8 Cluster: ATP-dependent RNA helicase; n=1; Blasto... 65 1e-09
UniRef50_Q0W8H7 Cluster: ATP-dependent RNA helicase; n=1; uncult... 65 1e-09
UniRef50_Q1VL45 Cluster: DEAD/DEAH box helicase-like protein; n=... 65 1e-09
UniRef50_Q1IMK6 Cluster: DEAD/DEAH box helicase-like; n=1; Acido... 65 1e-09
UniRef50_A4LYS0 Cluster: DEAD/DEAH box helicase domain protein; ... 65 1e-09
UniRef50_A0RP33 Cluster: Putative ATP-dependent RNA helicase Rhl... 65 1e-09
UniRef50_Q4N4B1 Cluster: ATP-dependent RNA helicase, putative; n... 65 1e-09
UniRef50_Q2NEZ7 Cluster: Predicted helicase; n=6; cellular organ... 65 1e-09
UniRef50_Q9P9G7 Cluster: DEAD-box RNA helicase; n=3; Methanosarc... 65 1e-09
UniRef50_Q5KBP5 Cluster: ATP-dependent RNA helicase DBP5; n=3; F... 65 1e-09
UniRef50_UPI0000DB7226 Cluster: PREDICTED: similar to Probable A... 64 2e-09
UniRef50_Q6YPL1 Cluster: Superfamily II DNA and RNA helicase; n=... 64 2e-09
UniRef50_Q62IF8 Cluster: ATP-dependent RNA helicase RhlE; n=59; ... 64 2e-09
UniRef50_Q5NZY2 Cluster: ATP-dependent RNA helicase DeaD; n=18; ... 64 2e-09
UniRef50_Q5FNK0 Cluster: ATP-dependent RNA helicase; n=1; Glucon... 64 2e-09
UniRef50_Q12QV2 Cluster: DEAD/DEAH box helicase-like protein; n=... 64 2e-09
UniRef50_Q08Q14 Cluster: HeliCase, c-terminal:dead/deah box heli... 64 2e-09
UniRef50_A0RUV7 Cluster: Superfamily II helicase; n=3; Thermopro... 64 2e-09
UniRef50_Q5NML9 Cluster: DNA and RNA helicase; n=28; Alphaproteo... 64 3e-09
UniRef50_Q480Z7 Cluster: ATP-dependent RNA helicase, DEAD box fa... 64 3e-09
UniRef50_A6CFZ8 Cluster: ATP-dependent RNA helicase; n=1; Planct... 64 3e-09
UniRef50_A3ZXX1 Cluster: ATP-dependent RNA helicase; n=2; Planct... 64 3e-09
UniRef50_A1U3D6 Cluster: DEAD/DEAH box helicase domain protein; ... 64 3e-09
UniRef50_Q9V3C4 Cluster: CG6539-PA; n=1; Drosophila melanogaster... 64 3e-09
UniRef50_Q5BXU1 Cluster: SJCHGC08663 protein; n=1; Schistosoma j... 64 3e-09
UniRef50_Q22308 Cluster: Putative uncharacterized protein; n=7; ... 64 3e-09
UniRef50_Q9HXE5 Cluster: ATP-dependent RNA helicase rhlB; n=22; ... 64 3e-09
UniRef50_UPI00006CBDDC Cluster: DEAD/DEAH box helicase family pr... 64 3e-09
UniRef50_Q89IS2 Cluster: Cold-shock dead-box protein A; n=28; Al... 64 3e-09
UniRef50_Q81RE0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 64 3e-09
UniRef50_A7CUH7 Cluster: DEAD/DEAH box helicase domain protein; ... 64 3e-09
UniRef50_A6T3R2 Cluster: ATP-dependent RNA helicase; n=52; cellu... 64 3e-09
UniRef50_Q6MQY6 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 63 4e-09
UniRef50_Q0TQ86 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 63 4e-09
UniRef50_Q03YT1 Cluster: Superfamily II DNA and RNA helicase; n=... 63 4e-09
UniRef50_A6QHA1 Cluster: ATP-dependent RNA helicase DEAD/DEAH bo... 63 4e-09
UniRef50_A5CVQ6 Cluster: ATP-dependent RNA helicase DeaD; n=2; s... 63 4e-09
UniRef50_A4B5L7 Cluster: ATP-dependent RNA helicase DbpA; n=3; P... 63 4e-09
UniRef50_A0VLH7 Cluster: DEAD/DEAH box helicase domain protein; ... 63 4e-09
UniRef50_A0KZD5 Cluster: DEAD/DEAH box helicase domain protein; ... 63 4e-09
UniRef50_Q7QQX6 Cluster: GLP_383_7421_6129; n=1; Giardia lamblia... 63 4e-09
UniRef50_Q11039 Cluster: Cold-shock DEAD box protein A homolog; ... 63 4e-09
UniRef50_UPI0000499D6F Cluster: DEAD/DEAH box helicase; n=1; Ent... 63 6e-09
UniRef50_Q89UH0 Cluster: Dead-box ATP-dependent RNA helicase; n=... 63 6e-09
UniRef50_Q0G0P8 Cluster: Superfamily II DNA and RNA helicase; n=... 63 6e-09
UniRef50_Q0C4R1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 63 6e-09
UniRef50_Q7QNT5 Cluster: GLP_88_2286_3572; n=1; Giardia lamblia ... 63 6e-09
UniRef50_Q688Z4 Cluster: Putative uncharacterized protein; n=3; ... 63 6e-09
UniRef50_Q88NB7 Cluster: ATP-dependent RNA helicase rhlB; n=18; ... 63 6e-09
UniRef50_Q8SQK9 Cluster: ATP-dependent RNA helicase DHH1; n=1; E... 63 6e-09
UniRef50_Q9KKW0 Cluster: ATP-dependent RNA helicase, DEAD box fa... 62 8e-09
UniRef50_Q12B10 Cluster: DEAD/DEAH box helicase-like; n=13; Prot... 62 8e-09
UniRef50_A6H0L1 Cluster: Probable ATP-dependent RNA helicase, DE... 62 8e-09
UniRef50_Q2LZJ8 Cluster: GA19670-PA; n=1; Drosophila pseudoobscu... 62 8e-09
UniRef50_A2SQE1 Cluster: DEAD/DEAH box helicase domain protein; ... 62 8e-09
UniRef50_P75172 Cluster: Probable ATP-dependent RNA helicase MG4... 62 8e-09
UniRef50_O49289 Cluster: Putative DEAD-box ATP-dependent RNA hel... 62 8e-09
UniRef50_A5E058 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 62 8e-09
UniRef50_P20448 Cluster: ATP-dependent RNA helicase DBP4; n=13; ... 62 8e-09
UniRef50_Q6MBR0 Cluster: Putative ATP-dependent RNA helicase; n=... 62 1e-08
UniRef50_Q11TW3 Cluster: Possible ATP-dependent RNA helicase; n=... 62 1e-08
UniRef50_Q0AVQ9 Cluster: ATP-dependent RNA helicase; n=1; Syntro... 62 1e-08
UniRef50_Q8MZI3 Cluster: GH10652p; n=2; Drosophila melanogaster|... 62 1e-08
UniRef50_Q8EJQ5 Cluster: ATP-dependent RNA helicase rhlB; n=62; ... 62 1e-08
UniRef50_Q56XG6 Cluster: DEAD-box ATP-dependent RNA helicase 15;... 62 1e-08
UniRef50_Q31AC4 Cluster: DEAD/DEAH box helicase-like protein; n=... 62 1e-08
UniRef50_A6TUK6 Cluster: DEAD/DEAH box helicase domain protein; ... 62 1e-08
UniRef50_Q17JB5 Cluster: DEAD box ATP-dependent RNA helicase; n=... 62 1e-08
UniRef50_Q5KME7 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 62 1e-08
UniRef50_Q8YH70 Cluster: ATP-DEPENDENT RNA HELICASE RHLE; n=10; ... 61 2e-08
UniRef50_Q5FS73 Cluster: ATP-dependent RNA helicase; n=2; Glucon... 61 2e-08
UniRef50_Q44NG9 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 61 2e-08
UniRef50_A6NSW7 Cluster: Putative uncharacterized protein; n=1; ... 61 2e-08
UniRef50_A6DL95 Cluster: Probable ATP-dependent RNA helicase; n=... 61 2e-08
UniRef50_A3I1F5 Cluster: DEAD/DEAH box helicase-like protein; n=... 61 2e-08
UniRef50_A2U1Q9 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 61 2e-08
UniRef50_Q7QP86 Cluster: GLP_397_1016_18; n=1; Giardia lamblia A... 61 2e-08
UniRef50_Q4Q1P0 Cluster: DEAD box RNA helicase, putative; n=5; T... 61 2e-08
UniRef50_Q8SQM5 Cluster: ATP-dependent RNA helicase eIF4A; n=1; ... 61 2e-08
UniRef50_P44586 Cluster: Cold-shock DEAD box protein A homolog; ... 61 2e-08
UniRef50_A4RIF1 Cluster: ATP-dependent RNA helicase DBP5; n=7; A... 61 2e-08
UniRef50_Q2YZZ9 Cluster: Putative uncharacterized protein; n=1; ... 61 2e-08
UniRef50_A7BCL2 Cluster: Putative uncharacterized protein; n=1; ... 61 2e-08
UniRef50_Q4N9Q9 Cluster: DEAD box RNA helicase, putative; n=3; P... 61 2e-08
UniRef50_A1IIT5 Cluster: RNA helicase; n=1; Neobenedenia girella... 61 2e-08
UniRef50_A4UCU0 Cluster: DEAD box polypeptide 47 isoform 1 varia... 61 2e-08
UniRef50_Q7A4G0 Cluster: Probable DEAD-box ATP-dependent RNA hel... 61 2e-08
UniRef50_Q9H0S4 Cluster: Probable ATP-dependent RNA helicase DDX... 61 2e-08
UniRef50_Q9BUQ8 Cluster: Probable ATP-dependent RNA helicase DDX... 61 2e-08
UniRef50_Q9PGP6 Cluster: ATP-dependent RNA helicase; n=10; cellu... 60 3e-08
UniRef50_Q4FSS4 Cluster: Possible ATP-dependent DEAD/DEAH box RN... 60 3e-08
UniRef50_A6PQ62 Cluster: DEAD/DEAH box helicase domain protein; ... 60 3e-08
UniRef50_A3I404 Cluster: Putative uncharacterized protein; n=1; ... 60 3e-08
UniRef50_Q8SY39 Cluster: LD28101p; n=3; Diptera|Rep: LD28101p - ... 60 3e-08
UniRef50_Q22MC1 Cluster: Type III restriction enzyme, res subuni... 60 3e-08
UniRef50_Q09719 Cluster: ATP-dependent RNA helicase dbp10; n=2; ... 60 3e-08
UniRef50_UPI00015B5D7B Cluster: PREDICTED: similar to LD28101p; ... 60 4e-08
UniRef50_UPI00005A557C Cluster: PREDICTED: similar to eukaryotic... 60 4e-08
UniRef50_Q8EZ11 Cluster: ATP-dependent RNA helicase; n=4; Leptos... 60 4e-08
UniRef50_Q7MT81 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 60 4e-08
UniRef50_Q6APU7 Cluster: Related to ATP-dependent RNA helicase; ... 60 4e-08
UniRef50_Q2LY23 Cluster: Superfamily II DNA and RNA helicases; n... 60 4e-08
UniRef50_Q14NT1 Cluster: Putative atp-dependent rna helicase pro... 60 4e-08
UniRef50_A6Q8Y9 Cluster: ATP-dependent RNA helicase, DEAD-box fa... 60 4e-08
UniRef50_A4C6L9 Cluster: ATP-dependent RNA helicase, DEAD box fa... 60 4e-08
UniRef50_Q5D9C4 Cluster: SJCHGC09528 protein; n=1; Schistosoma j... 60 4e-08
UniRef50_Q17BP5 Cluster: DEAD box ATP-dependent RNA helicase; n=... 60 4e-08
UniRef50_A4RHM4 Cluster: Putative uncharacterized protein; n=1; ... 60 4e-08
UniRef50_Q9LUW5 Cluster: DEAD-box ATP-dependent RNA helicase 53;... 60 4e-08
UniRef50_Q9ZRZ8 Cluster: DEAD-box ATP-dependent RNA helicase 28;... 60 4e-08
UniRef50_Q6BML1 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 60 4e-08
UniRef50_Q4WRP2 Cluster: ATP-dependent RNA helicase mss116, mito... 60 4e-08
UniRef50_Q9K7L3 Cluster: RNA helicase; n=2; Bacillus|Rep: RNA he... 60 6e-08
UniRef50_Q6D2K3 Cluster: ATP-independent RNA helicase; n=6; Prot... 60 6e-08
UniRef50_Q5FUQ9 Cluster: ATP-dependent RNA helicase; n=11; cellu... 60 6e-08
UniRef50_Q0BSI7 Cluster: ATP-dependent RNA helicase; n=12; Alpha... 60 6e-08
UniRef50_A4RYJ1 Cluster: Predicted protein; n=3; Ostreococcus|Re... 60 6e-08
UniRef50_Q5CIF9 Cluster: DEAD-box RNA helicase; n=2; Cryptospori... 60 6e-08
UniRef50_Q54TF8 Cluster: DEAD-box RNA helicase; n=2; Dictyosteli... 60 6e-08
UniRef50_Q4QJG6 Cluster: ATP-dependent RNA helicase, putative; n... 60 6e-08
UniRef50_Q4P7Y2 Cluster: Putative uncharacterized protein; n=1; ... 60 6e-08
UniRef50_P20447 Cluster: ATP-dependent RNA helicase DBP3; n=20; ... 60 6e-08
UniRef50_UPI0000DB7667 Cluster: PREDICTED: similar to CG32344-PA... 59 7e-08
UniRef50_Q31EF0 Cluster: ATP-dependent RNA helicase; n=1; Thiomi... 59 7e-08
UniRef50_A4B385 Cluster: ATP-dependent RNA helicase, DEAD box fa... 59 7e-08
UniRef50_A1VA48 Cluster: DEAD/DEAH box helicase domain protein; ... 59 7e-08
UniRef50_Q4Q2Z6 Cluster: ATP-dependent RNA helicase, putative; n... 59 7e-08
UniRef50_P54475 Cluster: Probable ATP-dependent RNA helicase yqf... 59 7e-08
UniRef50_Q5KPU1 Cluster: ATP-dependent RNA helicase DBP8; n=2; F... 59 7e-08
UniRef50_Q9RKJ0 Cluster: ATP-dependent RNA helicase; n=2; Strept... 59 1e-07
UniRef50_Q1FMF9 Cluster: Helicase-like:DbpA, RNA-binding:DEAD/DE... 59 1e-07
UniRef50_O07897 Cluster: Heat resistant RNA dependent ATPase; n=... 59 1e-07
UniRef50_A3J7I3 Cluster: ATP-independent RNA helicase; n=5; Bact... 59 1e-07
UniRef50_A0BPV0 Cluster: Chromosome undetermined scaffold_12, wh... 59 1e-07
UniRef50_Q7RYZ7 Cluster: ATP-dependent RNA helicase dbp-8; n=15;... 59 1e-07
UniRef50_A4BHZ9 Cluster: ATP-dependent RNA helicase; n=1; Reinek... 58 1e-07
UniRef50_A0V009 Cluster: DEAD/DEAH box helicase-like; n=1; Clost... 58 1e-07
UniRef50_Q5CX71 Cluster: Hca4p helicase DBP4 (Helicase CA4). EIF... 58 1e-07
UniRef50_Q10RI7 Cluster: DEAD-box ATP-dependent RNA helicase 38;... 58 1e-07
UniRef50_Q8TDD1 Cluster: ATP-dependent RNA helicase DDX54; n=45;... 58 1e-07
UniRef50_Q9Y6V7 Cluster: Probable ATP-dependent RNA helicase DDX... 58 1e-07
UniRef50_P20449 Cluster: ATP-dependent RNA helicase DBP5; n=23; ... 58 1e-07
UniRef50_UPI000155CE2F Cluster: PREDICTED: similar to R27090_2; ... 58 2e-07
UniRef50_UPI0000F2BC8C Cluster: PREDICTED: similar to eukaryotic... 58 2e-07
UniRef50_Q0AR94 Cluster: DEAD/DEAH box helicase domain protein; ... 58 2e-07
UniRef50_A7NWH7 Cluster: Chromosome chr5 scaffold_2, whole genom... 58 2e-07
UniRef50_Q54TJ4 Cluster: Putative uncharacterized protein; n=1; ... 58 2e-07
UniRef50_A0CZH3 Cluster: Chromosome undetermined scaffold_32, wh... 58 2e-07
UniRef50_Q27268 Cluster: ATP-dependent RNA helicase WM6; n=82; E... 58 2e-07
UniRef50_Q4PEX7 Cluster: ATP-dependent RNA helicase DBP8; n=1; U... 58 2e-07
UniRef50_Q4SJI2 Cluster: Chromosome 4 SCAF14575, whole genome sh... 58 2e-07
UniRef50_Q8F0Q7 Cluster: ATP-dependent RNA helicase; n=4; Leptos... 58 2e-07
UniRef50_Q81JK1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 58 2e-07
UniRef50_Q28T45 Cluster: DEAD/DEAH box helicase-like protein; n=... 58 2e-07
UniRef50_Q1GJ43 Cluster: DEAD/DEAH box helicase-like protein; n=... 58 2e-07
UniRef50_Q0BUS0 Cluster: ATP-dependent RNA helicase; n=3; Rhodos... 58 2e-07
UniRef50_A6VWX2 Cluster: DEAD/DEAH box helicase domain protein; ... 58 2e-07
UniRef50_Q4Y0X7 Cluster: DEAD-box RNA helicase, putative; n=2; P... 58 2e-07
UniRef50_Q6CZD9 Cluster: ATP-dependent RNA helicase rhlB; n=2; G... 58 2e-07
UniRef50_Q6FML5 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 58 2e-07
UniRef50_UPI0000E48294 Cluster: PREDICTED: similar to DEAD (Asp-... 57 3e-07
UniRef50_Q7VQL9 Cluster: Cold-shock DEAD-box protein A, inducibl... 57 3e-07
UniRef50_Q41F45 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 57 3e-07
UniRef50_Q0LVA0 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 57 3e-07
UniRef50_Q087U7 Cluster: DEAD/DEAH box helicase domain protein; ... 57 3e-07
UniRef50_A6DML6 Cluster: ATP-dependent RNA helicase; n=1; Lentis... 57 3e-07
UniRef50_A0M3C7 Cluster: RhlE-like DEAD box family ATP-dependent... 57 3e-07
UniRef50_Q7QTB2 Cluster: GLP_15_13424_14974; n=2; Giardia intest... 57 3e-07
UniRef50_Q7QQ49 Cluster: GLP_139_12217_14094; n=1; Giardia lambl... 57 3e-07
UniRef50_Q58HG3 Cluster: DEAD-box RNA helicase; n=4; Eukaryota|R... 57 3e-07
UniRef50_A6N5Z1 Cluster: Helicase; n=7; Plasmodium|Rep: Helicase... 57 3e-07
UniRef50_A2DFG9 Cluster: DEAD/DEAH box helicase family protein; ... 57 3e-07
UniRef50_Q1E273 Cluster: Putative uncharacterized protein; n=2; ... 57 3e-07
UniRef50_Q9PA24 Cluster: ATP-dependent RNA helicase rhlB; n=87; ... 57 3e-07
UniRef50_Q9NR30 Cluster: Nucleolar RNA helicase 2; n=51; Euteleo... 57 3e-07
UniRef50_UPI00015B61D8 Cluster: PREDICTED: similar to vasa-like ... 57 4e-07
UniRef50_UPI0001555979 Cluster: PREDICTED: similar to ATP-depend... 57 4e-07
UniRef50_Q30SZ2 Cluster: DEAD/DEAH box helicase-like; n=1; Thiom... 57 4e-07
UniRef50_Q11U28 Cluster: ATP-dependent RNA helicase protein; n=4... 57 4e-07
UniRef50_Q54Y81 Cluster: Putative RNA helicase; n=2; Dictyosteli... 57 4e-07
UniRef50_A0T1H5 Cluster: SF2-family helicase; n=6; Plasmodium|Re... 57 4e-07
UniRef50_Q59H21 Cluster: ATP-dependent RNA helicase ROK1 isoform... 57 4e-07
UniRef50_Q53FI9 Cluster: Nucleolar protein GU2 variant; n=3; Eut... 57 4e-07
UniRef50_Q13838 Cluster: Spliceosome RNA helicase BAT1; n=55; Eu... 57 4e-07
UniRef50_Q9Y2R4 Cluster: Probable ATP-dependent RNA helicase DDX... 57 4e-07
UniRef50_Q88XN5 Cluster: ATP-dependent RNA helicase; n=2; Lactob... 56 5e-07
UniRef50_Q5QWG1 Cluster: ATP-dependent RNA helicase; n=1; Idioma... 56 5e-07
UniRef50_Q4PNH7 Cluster: Putative cold-shock dead-box protein A;... 56 5e-07
UniRef50_A6DHU9 Cluster: DEAD/DEAH box helicase-like protein; n=... 56 5e-07
UniRef50_A0KXT6 Cluster: DEAD/DEAH box helicase domain protein; ... 56 5e-07
UniRef50_Q95QN2 Cluster: Putative uncharacterized protein; n=2; ... 56 5e-07
UniRef50_A2DGJ7 Cluster: DEAD/DEAH box helicase family protein; ... 56 5e-07
UniRef50_Q8IV96 Cluster: DDX6 protein; n=8; Eukaryota|Rep: DDX6 ... 56 5e-07
UniRef50_Q9M2F9 Cluster: DEAD-box ATP-dependent RNA helicase 52;... 56 5e-07
UniRef50_Q4S1T3 Cluster: Chromosome undetermined SCAF14764, whol... 56 7e-07
UniRef50_Q81LV0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 56 7e-07
UniRef50_Q6A6U7 Cluster: ATP-dependent RNA helicase; n=3; Actino... 56 7e-07
UniRef50_A6W6A7 Cluster: DEAD/DEAH box helicase domain protein; ... 56 7e-07
UniRef50_Q17II7 Cluster: DEAD box ATP-dependent RNA helicase; n=... 56 7e-07
UniRef50_Q16W98 Cluster: DEAD box ATP-dependent RNA helicase; n=... 56 7e-07
UniRef50_A7S2R2 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 56 7e-07
UniRef50_A3QMD4 Cluster: Putative uncharacterized protein mel-46... 56 7e-07
UniRef50_A6SDG8 Cluster: Putative uncharacterized protein; n=1; ... 56 7e-07
UniRef50_Q5KNF8 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 56 7e-07
UniRef50_P42305 Cluster: ATP-dependent RNA helicase dbpA; n=9; F... 56 7e-07
UniRef50_P38719 Cluster: ATP-dependent RNA helicase DBP8; n=14; ... 56 7e-07
UniRef50_Q2H0R2 Cluster: ATP-dependent RNA helicase DBP10; n=1; ... 56 7e-07
UniRef50_Q5NN72 Cluster: DNA and RNA helicase; n=3; Sphingomonad... 56 9e-07
UniRef50_Q11WD3 Cluster: Possible ATP-dependent RNA helicase; n=... 56 9e-07
UniRef50_A6QC93 Cluster: ATP-independent RNA helicase DbpA; n=1;... 56 9e-07
UniRef50_A5EYB1 Cluster: ATP-dependent rna helicase Rhl; n=2; Ga... 56 9e-07
UniRef50_A3WBM2 Cluster: Cold-shock dead-box protein A; n=1; Ery... 56 9e-07
UniRef50_A3JG19 Cluster: ATP-dependent RNA helicase; n=1; Marino... 56 9e-07
UniRef50_A0LLL9 Cluster: DEAD/DEAH box helicase domain protein; ... 56 9e-07
UniRef50_A3AD37 Cluster: Putative uncharacterized protein; n=2; ... 56 9e-07
UniRef50_Q9VRI0 Cluster: CG1666-PA; n=22; Eumetazoa|Rep: CG1666-... 56 9e-07
UniRef50_Q61AN8 Cluster: Putative uncharacterized protein CBG136... 56 9e-07
UniRef50_A7AWS5 Cluster: DEAD/DEAH box helicase and helicase con... 56 9e-07
UniRef50_A2EAD4 Cluster: DEAD/DEAH box helicase family protein; ... 56 9e-07
UniRef50_A7ETZ1 Cluster: Putative uncharacterized protein; n=1; ... 56 9e-07
UniRef50_Q8L7S8 Cluster: DEAD-box ATP-dependent RNA helicase 3; ... 56 9e-07
UniRef50_Q93ZG7 Cluster: DEAD-box ATP-dependent RNA helicase 38;... 56 9e-07
UniRef50_P0C2N8 Cluster: ATP-dependent RNA helicase drs-1; n=16;... 56 9e-07
UniRef50_Q0UMB6 Cluster: ATP-dependent RNA helicase DBP10; n=1; ... 56 9e-07
UniRef50_UPI0000498D8E Cluster: ATP-dependent RNA helicase; n=1;... 55 1e-06
UniRef50_Q019E9 Cluster: ATP-dependent RNA helicase; n=2; Ostreo... 55 1e-06
UniRef50_Q7Q0A7 Cluster: ENSANGP00000011621; n=5; Endopterygota|... 55 1e-06
UniRef50_Q5CHB7 Cluster: Putative uncharacterized protein; n=2; ... 55 1e-06
UniRef50_Q4QIG1 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 55 1e-06
UniRef50_Q22T03 Cluster: DEAD/DEAH box helicase family protein; ... 55 1e-06
UniRef50_Q16JA8 Cluster: DEAD box ATP-dependent RNA helicase; n=... 55 1e-06
UniRef50_Q97WT0 Cluster: ATP-dependent RNA helicase; n=4; Sulfol... 55 1e-06
UniRef50_Q978T9 Cluster: ATP-dependent RNA helicase; n=3; Thermo... 55 1e-06
UniRef50_Q2FKY7 Cluster: DEAD/DEAH box helicase-like; n=1; Metha... 55 1e-06
UniRef50_A3BT52 Cluster: DEAD-box ATP-dependent RNA helicase 29;... 55 1e-06
UniRef50_P93008 Cluster: DEAD-box ATP-dependent RNA helicase 21;... 55 1e-06
UniRef50_Q6C7X8 Cluster: ATP-dependent RNA helicase DBP10; n=3; ... 55 1e-06
UniRef50_UPI0000F1F65D Cluster: PREDICTED: hypothetical protein;... 55 2e-06
UniRef50_UPI00003C8469 Cluster: hypothetical protein Faci_030017... 55 2e-06
UniRef50_UPI00015A4B44 Cluster: DEAD (Asp-Glu-Ala-Asp) box polyp... 55 2e-06
UniRef50_Q4V836 Cluster: MGC114699 protein; n=9; Deuterostomia|R... 55 2e-06
UniRef50_Q8D563 Cluster: Superfamily II DNA and RNA helicase; n=... 55 2e-06
UniRef50_Q835K0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 55 2e-06
UniRef50_Q6A841 Cluster: Putative ATP-dependent RNA helicase; n=... 55 2e-06
UniRef50_Q5GRS8 Cluster: Superfamily II DNA/RNA helicase; n=4; W... 55 2e-06
UniRef50_Q2S6I0 Cluster: ATP-dependent RNA helicase; n=1; Salini... 55 2e-06
UniRef50_A1G315 Cluster: DEAD/DEAH box helicase-like; n=2; Salin... 55 2e-06
UniRef50_A1FEC3 Cluster: DEAD/DEAH box helicase-like; n=21; Gamm... 55 2e-06
UniRef50_A0UX17 Cluster: DEAD/DEAH box helicase-like; n=5; Clost... 55 2e-06
UniRef50_Q011U7 Cluster: Myc-regulated DEAD/H box 18 RNA helicas... 55 2e-06
UniRef50_Q54VF1 Cluster: Putative uncharacterized protein; n=1; ... 55 2e-06
UniRef50_Q8SR49 Cluster: ATP-dependent rRNA helicase SPB4; n=1; ... 55 2e-06
UniRef50_Q58083 Cluster: Probable ATP-dependent RNA helicase MJ0... 55 2e-06
UniRef50_O00148 Cluster: ATP-dependent RNA helicase DDX39; n=27;... 55 2e-06
UniRef50_Q07886 Cluster: Probable ATP-dependent RNA helicase Dbp... 55 2e-06
UniRef50_Q5BFU7 Cluster: ATP-dependent RNA helicase dbp10; n=14;... 55 2e-06
UniRef50_UPI0000E23613 Cluster: PREDICTED: similar to eukaryotic... 54 2e-06
UniRef50_UPI00004988F8 Cluster: DEAD/DEAH box helicase; n=1; Ent... 54 2e-06
UniRef50_Q2BIX8 Cluster: Probable ATP-dependent RNA helicase; n=... 54 2e-06
UniRef50_Q1I3W1 Cluster: ATP-dependent RNA helicase RhlE, DEAD b... 54 2e-06
UniRef50_Q0HLM7 Cluster: DEAD/DEAH box helicase domain protein; ... 54 2e-06
UniRef50_A3PFY9 Cluster: DEAD/DEAH box helicase domain protein; ... 54 2e-06
UniRef50_Q9FQ90 Cluster: Putative chloroplast RNA helicase VDL' ... 54 2e-06
UniRef50_Q9VXW2 Cluster: CG6227-PA; n=11; Coelomata|Rep: CG6227-... 54 2e-06
UniRef50_Q86IZ9 Cluster: Similar to Rattus norvegicus (Rat). ROK... 54 2e-06
UniRef50_Q675R0 Cluster: ATP-dependent 61 kDa nucleolar RNA heli... 54 2e-06
UniRef50_Q16XX4 Cluster: DEAD box ATP-dependent RNA helicase; n=... 54 2e-06
UniRef50_Q4IBS2 Cluster: ATP-dependent RNA helicase MAK5; n=2; S... 54 2e-06
UniRef50_Q0UZ59 Cluster: ATP-dependent RNA helicase DBP9; n=1; P... 54 2e-06
UniRef50_Q9UTP9 Cluster: ATP-dependent RNA helicase dbp4; n=1; S... 54 2e-06
UniRef50_Q2H2J1 Cluster: ATP-dependent RNA helicase DBP4; n=14; ... 54 2e-06
UniRef50_UPI0000D5571E Cluster: PREDICTED: similar to CG5800-PA;... 54 3e-06
UniRef50_Q92AT6 Cluster: Lin1833 protein; n=13; Listeria|Rep: Li... 54 3e-06
UniRef50_Q0M1B5 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 54 3e-06
UniRef50_A1USG3 Cluster: DEAD/DEAH box helicase domain/helicase ... 54 3e-06
UniRef50_A0LD66 Cluster: DEAD/DEAH box helicase domain protein; ... 54 3e-06
UniRef50_A4S3A0 Cluster: Predicted protein; n=2; Ostreococcus|Re... 54 3e-06
UniRef50_Q9GV13 Cluster: Vasa-related protein CnVAS1; n=3; Eumet... 54 3e-06
UniRef50_Q95XM9 Cluster: Putative uncharacterized protein; n=2; ... 54 3e-06
UniRef50_Q7R388 Cluster: GLP_111_80478_82724; n=1; Giardia lambl... 54 3e-06
UniRef50_Q5CKB1 Cluster: ATP-dependent RNA helicase; n=2; Crypto... 54 3e-06
UniRef50_Q389T9 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 54 3e-06
UniRef50_A5KB15 Cluster: ATP-dependent RNA helicase, putative; n... 54 3e-06
UniRef50_A2DES1 Cluster: DEAD/DEAH box helicase family protein; ... 54 3e-06
UniRef50_Q8GY84 Cluster: DEAD-box ATP-dependent RNA helicase 10;... 54 3e-06
UniRef50_P21372 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 54 3e-06
UniRef50_Q6BLU9 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 54 3e-06
UniRef50_Q09903 Cluster: ATP-dependent RNA helicase drs1; n=1; S... 54 3e-06
UniRef50_P0C2N7 Cluster: ATP-dependent RNA helicase DRS1; n=2; C... 54 3e-06
UniRef50_Q7NAY1 Cluster: SrmB; n=1; Mycoplasma gallisepticum|Rep... 54 4e-06
UniRef50_Q30YG9 Cluster: DEAD/DEAH box helicase-like; n=3; Delta... 54 4e-06
UniRef50_A3EUK2 Cluster: Superfamily II DNA and RNA helicase; n=... 54 4e-06
UniRef50_A2DB16 Cluster: DEAD/DEAH box helicase family protein; ... 54 4e-06
UniRef50_A0CUN8 Cluster: Chromosome undetermined scaffold_28, wh... 54 4e-06
UniRef50_A7TSU7 Cluster: Putative uncharacterized protein; n=1; ... 54 4e-06
UniRef50_Q8H0U8 Cluster: DEAD-box ATP-dependent RNA helicase 42;... 54 4e-06
UniRef50_Q96GQ7 Cluster: Probable ATP-dependent RNA helicase DDX... 54 4e-06
UniRef50_Q8SRB2 Cluster: ATP-dependent RNA helicase DBP2; n=103;... 54 4e-06
UniRef50_UPI000051A2EE Cluster: PREDICTED: similar to Helicase C... 53 5e-06
UniRef50_Q30P62 Cluster: DEAD/DEAH box helicase-like; n=1; Thiom... 53 5e-06
UniRef50_Q2Z064 Cluster: Probable ATP-dependent RNA helicase; n=... 53 5e-06
UniRef50_Q2BGG8 Cluster: RNA helicase DbpA; n=1; Neptuniibacter ... 53 5e-06
UniRef50_Q1Q4V2 Cluster: Similar to ATP-independent RNA helicase... 53 5e-06
UniRef50_A6VX62 Cluster: DEAD/DEAH box helicase domain protein; ... 53 5e-06
UniRef50_Q01EH4 Cluster: Ddx49 Ddx49-related DEAD box helicase s... 53 5e-06
UniRef50_Q965K2 Cluster: Putative uncharacterized protein; n=2; ... 53 5e-06
UniRef50_Q4QC38 Cluster: RNA helicase, putative; n=7; Trypanosom... 53 5e-06
UniRef50_A7U5W7 Cluster: DEAD-box helicase 2; n=6; Plasmodium|Re... 53 5e-06
UniRef50_A7AWZ5 Cluster: DEAD/DEAH box helicase and helicase con... 53 5e-06
UniRef50_A0EIJ0 Cluster: Chromosome undetermined scaffold_99, wh... 53 5e-06
UniRef50_Q4IP34 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 53 5e-06
UniRef50_Q9Y7T7 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 53 5e-06
UniRef50_Q0U6X2 Cluster: ATP-dependent RNA helicase MAK5; n=2; P... 53 5e-06
UniRef50_A4R5B8 Cluster: ATP-dependent RNA helicase DBP10; n=2; ... 53 5e-06
UniRef50_UPI00006CDDA3 Cluster: CLN3 protein; n=1; Tetrahymena t... 53 6e-06
UniRef50_Q1VPX9 Cluster: ATP-independent RNA helicase; n=9; Bact... 53 6e-06
UniRef50_Q1LSH5 Cluster: DEAD/DEAH box helicase-like protein pre... 53 6e-06
UniRef50_Q238V7 Cluster: Type III restriction enzyme, res subuni... 53 6e-06
UniRef50_Q0CMM5 Cluster: Putative uncharacterized protein; n=2; ... 53 6e-06
UniRef50_A7ECJ8 Cluster: Putative uncharacterized protein; n=1; ... 53 6e-06
UniRef50_A4QQK0 Cluster: Putative uncharacterized protein; n=3; ... 53 6e-06
UniRef50_Q96XQ7 Cluster: 337aa long hypothetical ATP-dependent R... 53 6e-06
UniRef50_Q9LYJ9 Cluster: DEAD-box ATP-dependent RNA helicase 46;... 53 6e-06
UniRef50_Q9SQV1 Cluster: Probable DEAD-box ATP-dependent RNA hel... 53 6e-06
UniRef50_P32892 Cluster: ATP-dependent RNA helicase DRS1; n=13; ... 53 6e-06
UniRef50_Q836U7 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 52 8e-06
UniRef50_Q11UI8 Cluster: DEAD box-related helicase; n=3; Sphingo... 52 8e-06
UniRef50_A7HG33 Cluster: DEAD/DEAH box helicase domain protein; ... 52 8e-06
UniRef50_A6GPV2 Cluster: Helicase; n=1; Limnobacter sp. MED105|R... 52 8e-06
UniRef50_Q9SEV5 Cluster: RNA helicase; n=1; Guillardia theta|Rep... 52 8e-06
UniRef50_Q8I416 Cluster: ATP-dependent RNA helicase, putative; n... 52 8e-06
UniRef50_Q17KA8 Cluster: DEAD box ATP-dependent RNA helicase; n=... 52 8e-06
UniRef50_Q16KK0 Cluster: DEAD box ATP-dependent RNA helicase; n=... 52 8e-06
UniRef50_A7RY08 Cluster: Predicted protein; n=2; Eukaryota|Rep: ... 52 8e-06
UniRef50_A4V6M8 Cluster: Nucleolar RNA helicase II/Gu protein; n... 52 8e-06
UniRef50_A2DHK0 Cluster: DEAD/DEAH box helicase family protein; ... 52 8e-06
UniRef50_Q5N7W4 Cluster: DEAD-box ATP-dependent RNA helicase 30;... 52 8e-06
UniRef50_Q754U8 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 52 8e-06
UniRef50_Q6FU81 Cluster: ATP-dependent RNA helicase MSS116, mito... 52 8e-06
UniRef50_Q2BMZ1 Cluster: ATP-dependent RNA helicase; n=1; Neptun... 52 1e-05
UniRef50_A6Q863 Cluster: ATP-dependent RNA helicase; n=1; Sulfur... 52 1e-05
UniRef50_A2U4F0 Cluster: Putative ATP-dependent RNA helicase; n=... 52 1e-05
UniRef50_A0JYP4 Cluster: DEAD/DEAH box helicase domain protein; ... 52 1e-05
UniRef50_Q3LW03 Cluster: UB2 probably involved in pre-mRNA splic... 52 1e-05
UniRef50_Q014Y7 Cluster: RNA helicase-like protein; n=2; Ostreoc... 52 1e-05
UniRef50_A7P4J7 Cluster: Chromosome chr4 scaffold_6, whole genom... 52 1e-05
UniRef50_Q5BYH3 Cluster: SJCHGC05414 protein; n=1; Schistosoma j... 52 1e-05
UniRef50_A0D361 Cluster: Chromosome undetermined scaffold_36, wh... 52 1e-05
UniRef50_A0C321 Cluster: Chromosome undetermined scaffold_146, w... 52 1e-05
UniRef50_A7TJK8 Cluster: Putative uncharacterized protein; n=1; ... 52 1e-05
UniRef50_Q6K7R9 Cluster: DEAD-box ATP-dependent RNA helicase 48;... 52 1e-05
UniRef50_P15424 Cluster: ATP-dependent RNA helicase MSS116, mito... 52 1e-05
UniRef50_Q5T1V6 Cluster: Probable ATP-dependent RNA helicase DDX... 52 1e-05
UniRef50_Q80Y44 Cluster: Probable ATP-dependent RNA helicase DDX... 52 1e-05
UniRef50_Q13206 Cluster: Probable ATP-dependent RNA helicase DDX... 52 1e-05
UniRef50_UPI0000498CE0 Cluster: DEAD/DEAH box helicase; n=1; Ent... 52 1e-05
UniRef50_Q8EUW5 Cluster: ATP-dependent RNA helicase; n=1; Mycopl... 52 1e-05
UniRef50_Q1WSN6 Cluster: ATP-dependent RNA helicase; n=1; Lactob... 52 1e-05
UniRef50_A3TJG3 Cluster: ATP-dependent RNA helicase; n=5; Actino... 52 1e-05
UniRef50_A1SQH8 Cluster: DEAD/DEAH box helicase domain protein p... 52 1e-05
UniRef50_Q013X8 Cluster: DEAD/DEAH box RNA helicase; n=1; Ostreo... 52 1e-05
UniRef50_A4S6F2 Cluster: Predicted protein; n=1; Ostreococcus lu... 52 1e-05
UniRef50_Q9VX34 Cluster: CG5800-PA; n=2; Sophophora|Rep: CG5800-... 52 1e-05
UniRef50_Q5C221 Cluster: SJCHGC04124 protein; n=1; Schistosoma j... 52 1e-05
UniRef50_Q4Q1N9 Cluster: DEAD box RNA helicase, putative; n=5; T... 52 1e-05
UniRef50_A2E5C2 Cluster: DEAD/DEAH box helicase family protein; ... 52 1e-05
UniRef50_A2DP01 Cluster: DEAD/DEAH box helicase family protein; ... 52 1e-05
UniRef50_Q4P0P9 Cluster: Putative uncharacterized protein; n=1; ... 52 1e-05
UniRef50_Q3E9C3 Cluster: DEAD-box ATP-dependent RNA helicase 58,... 52 1e-05
UniRef50_Q3EBD3 Cluster: DEAD-box ATP-dependent RNA helicase 41;... 52 1e-05
UniRef50_Q9DF36 Cluster: RNA helicase II/Gu; n=9; Tetrapoda|Rep:... 51 2e-05
UniRef50_Q6F1J3 Cluster: ATP-dependent RNA helicase; n=4; Mollic... 51 2e-05
UniRef50_A5FH33 Cluster: DEAD/DEAH box helicase domain protein; ... 51 2e-05
UniRef50_A4AFV6 Cluster: ATP-dependent RNA helicase; n=3; Actino... 51 2e-05
UniRef50_A1KUM8 Cluster: Putative ATP-dependent RNA helicase; n=... 51 2e-05
UniRef50_Q6BG49 Cluster: RNA helicase, putative; n=1; Paramecium... 51 2e-05
UniRef50_O97032 Cluster: DjVLGB; n=2; Dugesia|Rep: DjVLGB - Duge... 51 2e-05
UniRef50_A7RHS2 Cluster: Predicted protein; n=1; Nematostella ve... 51 2e-05
UniRef50_Q9SF41 Cluster: DEAD-box ATP-dependent RNA helicase 45;... 51 2e-05
UniRef50_Q7RZH4 Cluster: ATP-dependent RNA helicase mak-5; n=1; ... 51 2e-05
UniRef50_Q03532 Cluster: ATP-dependent RNA helicase HAS1; n=70; ... 51 2e-05
>UniRef50_P38919 Cluster: Eukaryotic initiation factor 4A-III;
n=366; root|Rep: Eukaryotic initiation factor 4A-III -
Homo sapiens (Human)
Length = 411
Score = 134 bits (324), Expect = 2e-30
Identities = 62/85 (72%), Positives = 76/85 (89%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+++GRDVIAQ+QSGTGKTATFSIS+LQ +D +RE QALILAPTRELA QIQK ++ALGD
Sbjct: 72 IIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGD 131
Query: 431 HLNAKCHACIGGTNVREDIRQLESG 505
++N +CHACIGGTNV EDIR+L+ G
Sbjct: 132 YMNVQCHACIGGTNVGEDIRKLDYG 156
Score = 61.3 bits (142), Expect = 2e-08
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = +3
Query: 144 VVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
V TFD M L+E+LLRGIYAYGFEKPSAIQQRAI
Sbjct: 36 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAI 69
Score = 57.2 bits (132), Expect = 3e-07
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
+VV GTPGRV+DMI RR+L IK+ VLDEADEML++
Sbjct: 158 HVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK 195
>UniRef50_Q14240 Cluster: Eukaryotic initiation factor 4A-II; n=37;
Bilateria|Rep: Eukaryotic initiation factor 4A-II - Homo
sapiens (Human)
Length = 407
Score = 130 bits (313), Expect = 3e-29
Identities = 58/83 (69%), Positives = 75/83 (90%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
++G DVIAQAQSGTGKTATF+ISILQQ++ +E QAL+LAPTRELAQQIQKV++ALGD+
Sbjct: 68 IKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDY 127
Query: 434 LNAKCHACIGGTNVREDIRQLES 502
+ A CHACIGGTNVR ++++L++
Sbjct: 128 MGATCHACIGGTNVRNEMQKLQA 150
Score = 96.3 bits (229), Expect = 5e-19
Identities = 44/68 (64%), Positives = 54/68 (79%), Gaps = 2/68 (2%)
Frame = +3
Query: 63 NGPSKDQG-SYDGPPGMDP-GTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQ 236
+G S D + GP GMDP G ++++W+++V+ FDDMNLKE LLRGIYAYGFEKPSAIQQ
Sbjct: 2 SGGSADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQ 61
Query: 237 RAIXPCSK 260
RAI PC K
Sbjct: 62 RAIIPCIK 69
Score = 60.1 bits (139), Expect = 4e-08
Identities = 27/38 (71%), Positives = 32/38 (84%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
++VVGTPGRV+DM+ RR L IK+FVLDEADEMLSR
Sbjct: 154 HIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR 191
>UniRef50_Q4T4A9 Cluster: Chromosome undetermined SCAF9757, whole
genome shotgun sequence; n=2; Euteleostomi|Rep:
Chromosome undetermined SCAF9757, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 215
Score = 97.9 bits (233), Expect = 2e-19
Identities = 43/57 (75%), Positives = 49/57 (85%), Gaps = 1/57 (1%)
Frame = +3
Query: 93 DGPPGMDP-GTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIXPCSK 260
+GP GMDP G ++T+WD VV+ FDDMNLKE LLRG+YAYGFEKPSAIQQRAI PC K
Sbjct: 10 NGPEGMDPDGVIETNWDTVVDNFDDMNLKESLLRGVYAYGFEKPSAIQQRAILPCIK 66
Score = 84.6 bits (200), Expect = 2e-15
Identities = 42/53 (79%), Positives = 48/53 (90%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 412
++G DVIAQAQSGTGKTATF ISILQ+IDTS++E QALILAPTRELAQQ K+
Sbjct: 65 IKGHDVIAQAQSGTGKTATFVISILQRIDTSLKETQALILAPTRELAQQEWKL 117
>UniRef50_A5BNE7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 339
Score = 95.9 bits (228), Expect = 7e-19
Identities = 45/65 (69%), Positives = 54/65 (83%)
Frame = +2
Query: 257 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 436
+G DVI QAQSGTGKTATF ILQQ++ + +CQAL+LAPTRELAQQI+KV+ ALGDHL
Sbjct: 48 KGLDVIQQAQSGTGKTATFCSGILQQLNEELTQCQALVLAPTRELAQQIEKVMRALGDHL 107
Query: 437 NAKCH 451
N K +
Sbjct: 108 NVKIY 112
>UniRef50_A0D232 Cluster: Chromosome undetermined scaffold_35, whole
genome shotgun sequence; n=5; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_35,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 434
Score = 95.9 bits (228), Expect = 7e-19
Identities = 45/86 (52%), Positives = 62/86 (72%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
++ G+DV+AQAQSGTGKT TF+I LQ+ID + R+ Q +ILAP RELA+QI VV +G
Sbjct: 90 IILGKDVLAQAQSGTGKTGTFTIGALQRIDPNQRKTQVIILAPVRELAKQIYDVVKGIGQ 149
Query: 431 HLNAKCHACIGGTNVREDIRQLESGV 508
+LN + CIGGT+ +E + + GV
Sbjct: 150 YLNIEAFCCIGGTSTQETREKCKQGV 175
Score = 63.3 bits (147), Expect = 4e-09
Identities = 26/43 (60%), Positives = 36/43 (83%)
Frame = +3
Query: 123 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIXP 251
L +W + VETF+D+ L ++LLRGI++YGFE+PSAIQQ+AI P
Sbjct: 47 LQENWIEQVETFEDLTLSKDLLRGIFSYGFERPSAIQQKAIKP 89
Score = 42.3 bits (95), Expect = 0.009
Identities = 16/38 (42%), Positives = 28/38 (73%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
++++ TPGR+ DM+ + L A ++L V+DEAD+ML +
Sbjct: 176 HIIIATPGRLIDMMKNKYLDATFMRLLVVDEADQMLDQ 213
>UniRef50_Q4SP80 Cluster: Chromosome 15 SCAF14542, whole genome
shotgun sequence; n=5; Euteleostomi|Rep: Chromosome 15
SCAF14542, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 366
Score = 93.1 bits (221), Expect = 5e-18
Identities = 43/64 (67%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Frame = +3
Query: 72 SKDQGSYDGPPGMDP-GTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIX 248
SKD G GP GM+P G ++++W ++ + FDDMNLKE LLRGIYAYGFEKPSAIQQRAI
Sbjct: 11 SKDHG---GPDGMEPDGIIESNWTEITDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAII 67
Query: 249 PCSK 260
PC K
Sbjct: 68 PCIK 71
Score = 77.4 bits (182), Expect = 3e-13
Identities = 37/49 (75%), Positives = 44/49 (89%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 400
++G DVIAQAQSGTGKTATF+ISILQQ++ +E QAL+LAPTRELAQQ
Sbjct: 70 IKGYDVIAQAQSGTGKTATFAISILQQLEIDQKETQALVLAPTRELAQQ 118
>UniRef50_A5BYF4 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 377
Score = 91.5 bits (217), Expect = 1e-17
Identities = 40/67 (59%), Positives = 55/67 (82%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
++QG DVIAQAQSGTGKT+ F++++ Q +DTS RE QALI +PTRELA Q +KV++A+GD
Sbjct: 310 IIQGHDVIAQAQSGTGKTSMFALTVYQMVDTSNREVQALISSPTRELASQTEKVILAIGD 369
Query: 431 HLNAKCH 451
+N + H
Sbjct: 370 SVNIQAH 376
Score = 58.8 bits (136), Expect = 1e-07
Identities = 24/41 (58%), Positives = 33/41 (80%)
Frame = +3
Query: 129 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIXP 251
T+ +++ +FD M +K +LLRGIYAY FEKPSA+QQRA+ P
Sbjct: 269 TEGVELIMSFDQMGIKNDLLRGIYAYSFEKPSAVQQRAVLP 309
>UniRef50_Q67NW1 Cluster: ATP-dependent RNA helicase; n=5;
Firmicutes|Rep: ATP-dependent RNA helicase -
Symbiobacterium thermophilum
Length = 526
Score = 86.6 bits (205), Expect = 4e-16
Identities = 42/87 (48%), Positives = 56/87 (64%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 427
ALLQG+DVI QAQ+GTGKTA F + I++++ R QAL+L PTRELA Q+ + + +G
Sbjct: 39 ALLQGKDVIGQAQTGTGKTAAFGVPIVERLVPGQRAVQALVLTPTRELAIQVAEEITKIG 98
Query: 428 DHLNAKCHACIGGTNVREDIRQLESGV 508
H K A GG ++ IR L GV
Sbjct: 99 RHARVKTIAIYGGQSIERQIRSLRFGV 125
Score = 44.8 bits (101), Expect = 0.002
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
VV+GTPGR+ D + R L + +++ VLDEADEML
Sbjct: 127 VVIGTPGRILDHLGRSTLDLSQVRMVVLDEADEML 161
Score = 33.5 bits (73), Expect = 4.2
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +3
Query: 153 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
TF D+ L E++L+ + GFE+PS IQ +AI
Sbjct: 7 TFRDLALSEKVLKALDDMGFEEPSPIQAQAI 37
>UniRef50_P39517 Cluster: ATP-dependent RNA helicase DHH1; n=103;
Eukaryota|Rep: ATP-dependent RNA helicase DHH1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 506
Score = 86.2 bits (204), Expect = 6e-16
Identities = 40/85 (47%), Positives = 56/85 (65%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
+ GRD++A+A++GTGKTA F I L+++ + + QALI+ PTRELA Q +VV LG H
Sbjct: 81 ITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKH 140
Query: 434 LNAKCHACIGGTNVREDIRQLESGV 508
C GGTN+R+DI +L V
Sbjct: 141 CGISCMVTTGGTNLRDDILRLNETV 165
Score = 48.4 bits (110), Expect = 1e-04
Identities = 20/41 (48%), Positives = 30/41 (73%)
Frame = +1
Query: 499 EWCYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
E +++VGTPGRV D+ +R+ + LF++DEAD+MLSR
Sbjct: 163 ETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSR 203
Score = 44.0 bits (99), Expect = 0.003
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +3
Query: 153 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
TF+D LK ELL GI+ GFEKPS IQ+ AI
Sbjct: 47 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAI 77
>UniRef50_Q5KJI2 Cluster: ATP-dependent RNA helicase DHH1; n=4;
Dikarya|Rep: ATP-dependent RNA helicase DHH1 -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 625
Score = 83.0 bits (196), Expect = 5e-15
Identities = 43/86 (50%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
L GRD++A+A++GTGKTA+F I L +I+TS+ QALIL PTRELA Q +V LG H
Sbjct: 71 LTGRDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAH 130
Query: 434 L-NAKCHACIGGTNVREDIRQLESGV 508
+ N + GGT +R+DI +L+ V
Sbjct: 131 IPNLQVMITTGGTTLRDDILRLQQPV 156
Score = 45.2 bits (102), Expect = 0.001
Identities = 25/55 (45%), Positives = 31/55 (56%)
Frame = +3
Query: 81 QGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
QG P + P T D Q F+D L+ ELL GIY GFE+PS IQ++AI
Sbjct: 14 QGLAAPPKDLRPQTEDVTATQG-SRFEDFGLRRELLMGIYTAGFERPSPIQEQAI 67
Score = 39.9 bits (89), Expect = 0.048
Identities = 16/37 (43%), Positives = 27/37 (72%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
+++VGTPGR+ D+ ++ N +FV+DEAD++LS
Sbjct: 157 HILVGTPGRILDLGSKGIASLNKCGVFVMDEADKLLS 193
>UniRef50_Q4T821 Cluster: Chromosome undetermined SCAF7914, whole
genome shotgun sequence; n=3; Tetraodontidae|Rep:
Chromosome undetermined SCAF7914, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 502
Score = 81.0 bits (191), Expect = 2e-14
Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
L GRD++A+A++GTGK+ + I +L++ID QAL+L PTRELA Q+ ++ I + H
Sbjct: 124 LSGRDILARAKNGTGKSGAYLIPMLERIDLKKDHIQALVLVPTRELALQVSQISIQIAKH 183
Query: 434 L-NAKCHACIGGTNVREDIRQLESGV 508
L K A GGTN+R+DI +L+ V
Sbjct: 184 LGGVKVMATTGGTNLRDDIMRLDETV 209
Score = 38.3 bits (85), Expect = 0.15
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F+D LK ELL GI+ G+EKPS IQ+ +I
Sbjct: 91 FEDYCLKRELLMGIFEMGWEKPSPIQEESI 120
>UniRef50_A2AAP7 Cluster: DEAD (Asp-Glu-Ala-Asp) box polypeptide 48;
n=5; Fungi/Metazoa group|Rep: DEAD (Asp-Glu-Ala-Asp) box
polypeptide 48 - Mus musculus (Mouse)
Length = 299
Score = 80.6 bits (190), Expect = 3e-14
Identities = 45/85 (52%), Positives = 58/85 (68%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+++GRDVIAQ+QSGTGKTATFS+S+LQ +D Q L+ ALGD
Sbjct: 72 IIKGRDVIAQSQSGTGKTATFSVSVLQCLDI-----QGLL----------------ALGD 110
Query: 431 HLNAKCHACIGGTNVREDIRQLESG 505
++N +CHACIGGTNV EDIR+L+ G
Sbjct: 111 YMNVQCHACIGGTNVGEDIRKLDYG 135
Score = 61.3 bits (142), Expect = 2e-08
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = +3
Query: 144 VVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
V TFD M L+E+LLRGIYAYGFEKPSAIQQRAI
Sbjct: 36 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAI 69
Score = 57.2 bits (132), Expect = 3e-07
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
+VV GTPGRV+DMI RR+L IK+ VLDEADEML++
Sbjct: 137 HVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK 174
>UniRef50_Q1MY97 Cluster: DEAD/DEAH box helicase-like protein; n=2;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Oceanobacter sp. RED65
Length = 614
Score = 80.6 bits (190), Expect = 3e-14
Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
LL+G+DV+ AQ+GTGKTA F++ +L + +RE Q L+LAPTRELAQQ+ V +
Sbjct: 40 LLEGKDVLGLAQTGTGKTAAFTLPLLARTQNEVREPQVLVLAPTRELAQQVAMAVESYSK 99
Query: 431 H-LNAKCHACIGGTNVREDIRQLESGVMW 514
H N K + GG++ R L+ G W
Sbjct: 100 HESNVKVASIYGGSDFGSQFRALKQGPQW 128
Score = 43.2 bits (97), Expect = 0.005
Identities = 22/34 (64%), Positives = 23/34 (67%)
Frame = +1
Query: 514 VVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
VVGTPGRV D I R L I+ VLDEADEML
Sbjct: 129 VVGTPGRVMDHIRRGTLKLEGIRAVVLDEADEML 162
>UniRef50_A0Z0M4 Cluster: ATP-dependent RNA helicase; n=1; marine
gamma proteobacterium HTCC2080|Rep: ATP-dependent RNA
helicase - marine gamma proteobacterium HTCC2080
Length = 582
Score = 79.8 bits (188), Expect = 5e-14
Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
LL+GRDV+ AQ+GTGKTA F++ IL ID +R QAL+L PTRELAQQ+ + + G
Sbjct: 43 LLEGRDVVGLAQTGTGKTAAFALPILANIDVKVRSPQALVLCPTRELAQQVAEAFRSYGR 102
Query: 431 HLNA-KCHACIGGTNVREDIRQLESG 505
+ + + GG ++R+ ++ L G
Sbjct: 103 GMGGLRILSIFGGADMRQQLKSLREG 128
Score = 44.0 bits (99), Expect = 0.003
Identities = 21/39 (53%), Positives = 26/39 (66%)
Frame = +1
Query: 499 EWCYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
E ++VV TPGR+ D I RR++ I VLDEADEML
Sbjct: 127 EGTHIVVATPGRLLDHIERRSIDLTGINAVVLDEADEML 165
>UniRef50_Q23U16 Cluster: DEAD/DEAH box helicase family protein;
n=1; Tetrahymena thermophila SB210|Rep: DEAD/DEAH box
helicase family protein - Tetrahymena thermophila SB210
Length = 475
Score = 79.8 bits (188), Expect = 5e-14
Identities = 42/63 (66%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ-IQKVVIALG 427
+++G+D IAQAQSGTGKTATFSI+ LQ IDTS QALILAPTRELAQQ I ++ LG
Sbjct: 68 IIKGKDTIAQAQSGTGKTATFSIATLQVIDTSSPHTQALILAPTRELAQQTITRIFFILG 127
Query: 428 DHL 436
+L
Sbjct: 128 VNL 130
Score = 54.0 bits (124), Expect = 3e-06
Identities = 25/41 (60%), Positives = 31/41 (75%)
Frame = +1
Query: 499 EWCYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
E VVVGTPGRV D+I ++ L + +KLF+LDEADEML R
Sbjct: 218 EGVQVVVGTPGRVLDLIQKKTLVTDHLKLFILDEADEMLGR 258
Score = 37.9 bits (84), Expect = 0.19
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +2
Query: 404 QKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
+KV++ LG+ L +AC GGT+ +ED ++L GV
Sbjct: 186 KKVIMYLGEFLKVSAYACTGGTDPKEDRKRLREGV 220
>UniRef50_Q725W5 Cluster: ATP-dependent RNA helicase, DEAD/DEAH
family; n=2; Desulfovibrio vulgaris subsp. vulgaris|Rep:
ATP-dependent RNA helicase, DEAD/DEAH family -
Desulfovibrio vulgaris (strain Hildenborough / ATCC
29579 / NCIMB8303)
Length = 532
Score = 79.0 bits (186), Expect = 8e-14
Identities = 41/86 (47%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
LL+GRDVI QAQ+GTGKTA F + +LQ+ID + R QAL+L PTRELA Q+ + AL
Sbjct: 39 LLEGRDVIGQAQTGTGKTAAFGLPLLQRIDAADRSVQALVLCPTRELALQVANGLTALAK 98
Query: 431 HL-NAKCHACIGGTNVREDIRQLESG 505
HL + + GG + L G
Sbjct: 99 HLRGVRILSVYGGQPIEPQASALRRG 124
Score = 46.4 bits (105), Expect = 6e-04
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
VVVGTPGR+ D I R L +++ VLDEADEML
Sbjct: 127 VVVGTPGRILDHINRGTLQLGVVRMTVLDEADEML 161
Score = 37.1 bits (82), Expect = 0.34
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +3
Query: 147 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
VE+F D+ L+EELL+ I GF +PS IQ AI
Sbjct: 4 VESFKDLPLEEELLKAIEELGFTEPSPIQSIAI 36
>UniRef50_A0BEU9 Cluster: Chromosome undetermined scaffold_102,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_102,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 395
Score = 79.0 bits (186), Expect = 8e-14
Identities = 36/86 (41%), Positives = 55/86 (63%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
L+QGRDV+ Q TGKT S+S+L D S+++ Q LIL TR+L ++ +++ALG
Sbjct: 56 LIQGRDVVIQNFRSTGKTTVMSLSVLSIFDLSVKKIQVLILQKTRKLTEENAGLIMALGK 115
Query: 431 HLNAKCHACIGGTNVREDIRQLESGV 508
LN HAC G ++++DI ++ GV
Sbjct: 116 FLNVSIHACSEGNSIQDDISVVQQGV 141
Score = 46.4 bits (105), Expect = 6e-04
Identities = 23/70 (32%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Frame = +3
Query: 144 VVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIXPC--SKDAML-SLKPSQELEKLLLS 314
+ TF+ M L++ELLRGI A+GF +P +QQRA+ P +D ++ + + + + + LS
Sbjct: 20 IQSTFESMKLRKELLRGINAFGFIRPLEVQQRALVPLIQGRDVVIQNFRSTGKTTVMSLS 79
Query: 315 LYRFYNKSIQ 344
+ ++ S++
Sbjct: 80 VLSIFDLSVK 89
Score = 42.3 bits (95), Expect = 0.009
Identities = 16/35 (45%), Positives = 27/35 (77%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+V+GTP RV++++ R+ + +K+ +LDEADEML
Sbjct: 143 IVLGTPDRVFELVQRKEISFAHLKMIILDEADEML 177
>UniRef50_UPI0000566899 Cluster: UPI0000566899 related cluster; n=1;
Mus musculus|Rep: UPI0000566899 UniRef100 entry - Mus
musculus
Length = 449
Score = 78.6 bits (185), Expect = 1e-13
Identities = 34/83 (40%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
L GRD++A+A++GTGK+ + I +L+++D QA+++ PTRELA Q+ ++ I + H
Sbjct: 116 LSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKH 175
Query: 434 L-NAKCHACIGGTNVREDIRQLE 499
+ AK A GGTN+R+D+ +L+
Sbjct: 176 MGGAKVMATTGGTNLRDDVMRLD 198
Score = 39.5 bits (88), Expect = 0.063
Identities = 16/38 (42%), Positives = 28/38 (73%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
+VV+ TPGR+ D+I + + +++ VLDEAD++LS+
Sbjct: 202 HVVIATPGRILDLIKKCLEKVDHVQMVVLDEADKLLSQ 239
>UniRef50_Q98RE0 Cluster: ATP-DEPENDENT RNA HELICASE; n=1;
Mycoplasma pulmonis|Rep: ATP-DEPENDENT RNA HELICASE -
Mycoplasma pulmonis
Length = 480
Score = 78.6 bits (185), Expect = 1e-13
Identities = 39/84 (46%), Positives = 53/84 (63%)
Frame = +2
Query: 257 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 436
+G+D+I QAQ+GTGKTA F+I IL +D SI Q L++APTRELA QI + LG +
Sbjct: 37 EGKDIIGQAQTGTGKTAAFAIPILSNLDCSINRIQHLVIAPTRELANQIYDQLNILGKYT 96
Query: 437 NAKCHACIGGTNVREDIRQLESGV 508
+K +GG + + L SGV
Sbjct: 97 CSKIALILGGVSYEKQKAALNSGV 120
Score = 41.1 bits (92), Expect = 0.021
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+VV TPGR+ D++ + + + IK F LDEADE+L
Sbjct: 122 IVVATPGRLEDLLAQNKIDLSHIKTFTLDEADELL 156
Score = 34.3 bits (75), Expect = 2.4
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIXP 251
F MN+K E+L+ + GFEKP+ IQ+ A+ P
Sbjct: 3 FTQMNIKSEILKSLDEIGFEKPTKIQE-AVLP 33
>UniRef50_A4FZ46 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Euryarchaeota|Rep: DEAD/DEAH box helicase domain
protein - Methanococcus maripaludis
Length = 541
Score = 78.6 bits (185), Expect = 1e-13
Identities = 41/87 (47%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Frame = +2
Query: 251 LLQG-RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 427
L++G RD++ QAQ+GTGKTA F I IL+ ID S R QALILAPTRELA Q+ + + ++
Sbjct: 36 LIEGKRDIVGQAQTGTGKTAAFGIPILETIDESSRNTQALILAPTRELAIQVAEEIDSIK 95
Query: 428 DHLNAKCHACIGGTNVREDIRQLESGV 508
GG ++ IR+L GV
Sbjct: 96 GSKRLNVFPVYGGQSIDRQIRELRRGV 122
Score = 46.8 bits (106), Expect = 4e-04
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
+VVGTPGR+ D I+RR + + VLDEADEML+
Sbjct: 124 IVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLN 159
>UniRef50_Q1QYG3 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Chromohalobacter salexigens DSM 3043|Rep: DEAD/DEAH box
helicase-like protein - Chromohalobacter salexigens
(strain DSM 3043 / ATCC BAA-138 / NCIMB13768)
Length = 568
Score = 78.2 bits (184), Expect = 1e-13
Identities = 40/87 (45%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 427
ALL+GRDV+ QAQ+GTGKTA F++ +L ++D RE Q L+LAPTRELAQQ+ + G
Sbjct: 42 ALLEGRDVLGQAQTGTGKTAAFALPLLSRLDLQRREPQVLVLAPTRELAQQVAASFVQYG 101
Query: 428 DHLNA-KCHACIGGTNVREDIRQLESG 505
+ + + GG RE + L G
Sbjct: 102 RGVKGLEVLSLCGGQEYREQLSGLRRG 128
Score = 43.2 bits (97), Expect = 0.005
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
V+VGTPGRV D + R +L + + VLDEADEML
Sbjct: 131 VIVGTPGRVIDHLDRGSLKLDGLNALVLDEADEML 165
>UniRef50_Q81VG0 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=16; cellular organisms|Rep: DEAD-box ATP-dependent RNA
helicase ydbR - Bacillus anthracis
Length = 528
Score = 77.4 bits (182), Expect = 3e-13
Identities = 34/82 (41%), Positives = 52/82 (63%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
LQG+D+I QAQ+GTGKTA F + +L ++DT Q +++APTRELA Q+ + + +G H
Sbjct: 37 LQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKH 96
Query: 434 LNAKCHACIGGTNVREDIRQLE 499
+ GG ++ IR L+
Sbjct: 97 KRVRILPIYGGQDINRQIRALK 118
Score = 47.2 bits (107), Expect = 3e-04
Identities = 19/37 (51%), Positives = 27/37 (72%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
+++VGTPGR+ D I R+ L ++ VLDEADEML+
Sbjct: 122 HIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLN 158
>UniRef50_Q7UNV7 Cluster: ATP-dependent RNA helicase; n=2;
Planctomycetaceae|Rep: ATP-dependent RNA helicase -
Rhodopirellula baltica
Length = 452
Score = 77.0 bits (181), Expect = 3e-13
Identities = 39/86 (45%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDT--SIRECQALILAPTRELAQQIQKVVIALG 427
L G+DVI QA++GTGKTA FSI IL+Q+D+ R+ QA+++ PTRELA Q+ L
Sbjct: 79 LNGKDVIGQARTGTGKTAAFSIPILEQLDSLEDCRDPQAIVIVPTRELADQVAAEAERLA 138
Query: 428 DHLNAKCHACIGGTNVREDIRQLESG 505
+ + GG N+ +RQLE+G
Sbjct: 139 RGVPTEIAVLSGGKNMNRQLRQLENG 164
Score = 43.6 bits (98), Expect = 0.004
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+VVGTPGRV+D + R L N + VLDEAD ML
Sbjct: 167 LVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRML 201
>UniRef50_Q0E2Q3 Cluster: Putative eukaryotic initiation factor
4A-2; n=5; Oryza sativa|Rep: Putative eukaryotic
initiation factor 4A-2 - Oryza sativa subsp. japonica
(Rice)
Length = 416
Score = 77.0 bits (181), Expect = 3e-13
Identities = 40/86 (46%), Positives = 53/86 (61%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
L G D+I Q+ GT T T ILQ++D + ECQAL+L PT +LA + Q V+ LG
Sbjct: 82 LCNGLDIIQQSLFGT--TVTLCCGILQRLDYASTECQALVLVPTHDLAHETQNVIGVLGQ 139
Query: 431 HLNAKCHACIGGTNVREDIRQLESGV 508
L+AK HA GGT+ ED + L +GV
Sbjct: 140 FLSAKAHAFCGGTSAHEDQQILSTGV 165
Score = 40.3 bits (90), Expect = 0.036
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
V VGTP V M+ RAL + I++FVLDEADE+L
Sbjct: 167 VAVGTPCHVLGMLQGRALCPDHIRMFVLDEADEVL 201
>UniRef50_Q484Q1 Cluster: RNA helicase DeaD; n=1; Colwellia
psychrerythraea 34H|Rep: RNA helicase DeaD - Colwellia
psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 611
Score = 76.6 bits (180), Expect = 5e-13
Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG- 427
LL G+DV+ +AQ+GTGKTA F + L +IDTSI++ Q ++LAPTRELA Q+ + + + G
Sbjct: 49 LLAGKDVLGEAQTGTGKTAAFGLPALAKIDTSIKKPQLMVLAPTRELAMQVAEAIESFGK 108
Query: 428 DHLNAKCHACIGGTNVREDIRQLESG 505
D + GG + +QLE G
Sbjct: 109 DMKGLRVATLYGGQSYGPQFQQLERG 134
Score = 45.6 bits (103), Expect = 0.001
Identities = 20/36 (55%), Positives = 29/36 (80%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
VVVGTPGR+ D + R++L + +++ VLDEADEML+
Sbjct: 137 VVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLN 172
>UniRef50_UPI000065E01D Cluster: Homolog of Brachydanio rerio
"Eukaryotic translation initiation factor 4A, isoform
1A.; n=1; Takifugu rubripes|Rep: Homolog of Brachydanio
rerio "Eukaryotic translation initiation factor 4A,
isoform 1A. - Takifugu rubripes
Length = 357
Score = 76.2 bits (179), Expect = 6e-13
Identities = 37/56 (66%), Positives = 47/56 (83%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIA 421
++G DVIAQ+QSGTGKTAT+ I+ LQ+ID + QA+ILAPTRELA QIQKVV++
Sbjct: 56 IKGFDVIAQSQSGTGKTATYVIAALQRIDMMKEDTQAIILAPTRELANQIQKVVLS 111
Score = 60.9 bits (141), Expect = 2e-08
Identities = 27/38 (71%), Positives = 32/38 (84%)
Frame = +3
Query: 147 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIXPCSK 260
V++F+ M L E LLRGI+AYGFEKPSAIQQ+AI PC K
Sbjct: 20 VDSFEGMMLNENLLRGIFAYGFEKPSAIQQQAIVPCIK 57
Score = 39.9 bits (89), Expect = 0.048
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +1
Query: 532 RVYDMITRRALHANTIKLFVLDEADEML 615
RV+D++ RRA+ A I+L VLDEAD+ML
Sbjct: 112 RVFDVLARRAVSAKAIRLLVLDEADQML 139
>UniRef50_Q8YXJ0 Cluster: ATP-dependent RNA helicase; n=11;
Cyanobacteria|Rep: ATP-dependent RNA helicase - Anabaena
sp. (strain PCC 7120)
Length = 513
Score = 75.4 bits (177), Expect = 1e-12
Identities = 36/86 (41%), Positives = 54/86 (62%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
LL GRDV+ Q+Q+GTGKTA FS+ IL+++D + QA++L PTRELA Q+ +
Sbjct: 37 LLSGRDVVGQSQTGTGKTAAFSLPILERLDPQQKAVQAIVLTPTRELAIQVHDAMAQFVG 96
Query: 431 HLNAKCHACIGGTNVREDIRQLESGV 508
+ + A GG ++ + QL+ GV
Sbjct: 97 NSGLRTLAIYGGQSIDRQMLQLKRGV 122
Score = 50.8 bits (116), Expect = 3e-05
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
++VVGTPGRV D++ R L + +K FVLDEADEMLS
Sbjct: 123 HIVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLS 159
>UniRef50_Q9KAA6 Cluster: ATP-dependent RNA helicase; n=5;
Firmicutes|Rep: ATP-dependent RNA helicase - Bacillus
halodurans
Length = 539
Score = 74.9 bits (176), Expect = 1e-12
Identities = 39/87 (44%), Positives = 53/87 (60%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 427
A+L G DVI QAQ+GTGKTA F I +++++ T R QALIL PTRELA Q+ + L
Sbjct: 39 AILAGGDVIGQAQTGTGKTAAFGIPVVEKVSTG-RHVQALILTPTRELAIQVSGEIQKLS 97
Query: 428 DHLNAKCHACIGGTNVREDIRQLESGV 508
H + GG ++ I+ L+ GV
Sbjct: 98 KHKKIRTLPIYGGQSIVHQIKALKQGV 124
Score = 42.7 bits (96), Expect = 0.007
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
VV+GTPGR+ D + R+ L + + +LDEADEML
Sbjct: 126 VVIGTPGRIIDHLRRKTLILDHVNTVILDEADEML 160
Score = 32.3 bits (70), Expect = 9.6
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F+++ + EE+ + I GFE+PS IQ +AI
Sbjct: 8 FNELQIGEEIKKAIIEMGFEEPSPIQAKAI 37
>UniRef50_A5E6W6 Cluster: ATP-dependent rRNA helicase RRP3; n=4;
Saccharomycetaceae|Rep: ATP-dependent rRNA helicase RRP3
- Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 504
Score = 74.9 bits (176), Expect = 1e-12
Identities = 37/81 (45%), Positives = 54/81 (66%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
LQG+D++ A++G+GKTA F+I ILQ + T+ + AL+LAPTRELA QI++ ALG
Sbjct: 133 LQGKDIVGIAETGSGKTAAFAIPILQTLYTAAQPYYALVLAPTRELAFQIKETFDALGSS 192
Query: 434 LNAKCHACIGGTNVREDIRQL 496
+ + IGG ++ E R L
Sbjct: 193 MGLRSVCIIGGMSMMEQARDL 213
>UniRef50_Q5ZT20 Cluster: ATP-dependent RNA helicase; n=4;
Legionella pneumophila|Rep: ATP-dependent RNA helicase -
Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 /ATCC 33152 / DSM 7513)
Length = 589
Score = 74.1 bits (174), Expect = 2e-12
Identities = 41/86 (47%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+LQGRD IA AQ+GTGKTA F++ ILQ + I QALILAPTRELA Q+ + L
Sbjct: 40 ILQGRDAIALAQTGTGKTAAFALPILQNLSPEISTTQALILAPTRELAIQVAEQFELLSK 99
Query: 431 H-LNAKCHACIGGTNVREDIRQLESG 505
+ N GG ++QL SG
Sbjct: 100 YQRNVTIAVLCGGQEYGRQLKQLRSG 125
Score = 48.4 bits (110), Expect = 1e-04
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
VVVGTPGR+ D I + L N +K F+LDEADEML
Sbjct: 128 VVVGTPGRILDHIDKGTLLLNNLKTFILDEADEML 162
>UniRef50_Q3AX69 Cluster: DEAD/DEAH box helicase-like; n=15;
Cyanobacteria|Rep: DEAD/DEAH box helicase-like -
Synechococcus sp. (strain CC9902)
Length = 624
Score = 74.1 bits (174), Expect = 2e-12
Identities = 38/87 (43%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIA-LG 427
L+ GRD++ QAQ+GTGKTA F++ +L+++++ + Q L+LAPTRELA Q+ A
Sbjct: 105 LMLGRDLVGQAQTGTGKTAAFALPLLERLESGQKTPQVLVLAPTRELAMQVADSFKAYAA 164
Query: 428 DHLNAKCHACIGGTNVREDIRQLESGV 508
H + K A GGT+ R I L GV
Sbjct: 165 GHPHLKVLAVYGGTDFRSQISTLRRGV 191
Score = 40.7 bits (91), Expect = 0.027
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
VVVGTPGRV D + + L + + VLDEADEML
Sbjct: 193 VVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEML 227
>UniRef50_A2TP65 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family protein; n=13; Bacteroidetes|Rep: ATP-dependent
RNA helicase, DEAD/DEAH box family protein - Dokdonia
donghaensis MED134
Length = 638
Score = 74.1 bits (174), Expect = 2e-12
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
L + RD++A AQ+GTGKTA F +LQ ID S + Q LI+APTREL QI +
Sbjct: 36 LAEDRDMVALAQTGTGKTAAFGFPLLQNIDASSKTTQGLIIAPTRELCLQITNEMKLYAK 95
Query: 431 HL-NAKCHACIGGTNVREDIRQLESG 505
H+ + A GG+N++E R++ G
Sbjct: 96 HIKGVRVVAVYGGSNIQEQAREISRG 121
Score = 42.3 bits (95), Expect = 0.009
Identities = 19/36 (52%), Positives = 25/36 (69%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
+VV TPGR+ DM+ RR + + VLDEADEML+
Sbjct: 124 IVVATPGRMQDMMRRRMVDITKLSYCVLDEADEMLN 159
Score = 33.9 bits (74), Expect = 3.1
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +3
Query: 153 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
TFD + L LL+ I GFE PS IQ+ AI
Sbjct: 2 TFDQLGLNAPLLQAIADMGFETPSKIQEEAI 32
>UniRef50_O26305 Cluster: ATP-dependent RNA helicase, eIF-4A family;
n=1; Methanothermobacter thermautotrophicus str. Delta
H|Rep: ATP-dependent RNA helicase, eIF-4A family -
Methanobacterium thermoautotrophicum
Length = 425
Score = 74.1 bits (174), Expect = 2e-12
Identities = 36/85 (42%), Positives = 53/85 (62%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
L G DV+ +AQ+GTGKTA F+I +L+ ++ R QALI+ PTREL Q+ + + +G +
Sbjct: 39 LDGMDVVGEAQTGTGKTAAFAIPVLENLEAE-RVPQALIICPTRELCLQVSEEIKRIGKY 97
Query: 434 LNAKCHACIGGTNVREDIRQLESGV 508
+ K A GG ++ I QL GV
Sbjct: 98 MKVKVLAVYGGQSIGNQIAQLRRGV 122
Score = 39.9 bits (89), Expect = 0.048
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
+V+V TPGR+ D I R + I VLDEADEML+
Sbjct: 123 HVIVATPGRLIDHIERGTVDLGGISTVVLDEADEMLN 159
>UniRef50_Q9KLE2 Cluster: ATP-dependent RNA helicase DeaD; n=35;
Vibrionales|Rep: ATP-dependent RNA helicase DeaD -
Vibrio cholerae
Length = 663
Score = 73.7 bits (173), Expect = 3e-12
Identities = 36/86 (41%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
LL+GRD + +AQ+GTGKTA FS+ +L +++ S + QA+++APTRELA Q+ + LG
Sbjct: 60 LLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQ 119
Query: 431 HLNA-KCHACIGGTNVREDIRQLESG 505
++ K GG ++ + +R L+SG
Sbjct: 120 NIKGLKVLEIYGGASILDQMRALKSG 145
Score = 52.0 bits (119), Expect = 1e-05
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++VVGTPGRV D+ITR LH + F+LDEADEML
Sbjct: 147 HIVVGTPGRVKDLITRDRLHLDECHTFILDEADEML 182
>UniRef50_Q7VFA9 Cluster: ATP-dependent RNA helicase DeaD; n=6;
Helicobacteraceae|Rep: ATP-dependent RNA helicase DeaD -
Helicobacter hepaticus
Length = 530
Score = 73.3 bits (172), Expect = 4e-12
Identities = 37/83 (44%), Positives = 55/83 (66%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+LQG+D+IAQAQ+GTGKTA F+I IL ++ + ++ +ALI+ PTRELA QI + ++ LG
Sbjct: 79 ILQGKDLIAQAQTGTGKTAAFAIPILNTLNRN-KDIEALIITPTRELAMQISEEILKLGR 137
Query: 431 HLNAKCHACIGGTNVREDIRQLE 499
K GG +++ LE
Sbjct: 138 FGRIKTICMYGGQSIKRQCDLLE 160
>UniRef50_Q6MN67 Cluster: ATP-dependent RNA helicase; n=3;
Deltaproteobacteria|Rep: ATP-dependent RNA helicase -
Bdellovibrio bacteriovorus
Length = 505
Score = 73.3 bits (172), Expect = 4e-12
Identities = 42/87 (48%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
LL G+D+I QA++G+GKTA FS+ IL +I+ QALIL PTRELA Q+ + LG
Sbjct: 81 LLAGKDIIGQAKTGSGKTAAFSLPILNKINLDQPLLQALILCPTRELASQVVTEIRKLGR 140
Query: 431 HL-NAKCHACIGGTNVREDIRQLESGV 508
L K A GG + RE LE+GV
Sbjct: 141 RLPGLKVLAMTGGQSGREQADALENGV 167
Score = 42.7 bits (96), Expect = 0.007
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+VVGTPGR+ D + R + + +K VLDEAD+ML
Sbjct: 169 IVVGTPGRLADFVGRNRIDLSAVKTVVLDEADKML 203
>UniRef50_A5UZK3 Cluster: DEAD/DEAH box helicase domain protein;
n=12; Bacteria|Rep: DEAD/DEAH box helicase domain
protein - Roseiflexus sp. RS-1
Length = 467
Score = 73.3 bits (172), Expect = 4e-12
Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIR-ECQALILAPTRELAQQIQKVVIALGD 430
L GRDVI AQ+GTGKTA F + ILQ++ R +A+I+ PTRELA+QIQ V+ ALG
Sbjct: 36 LDGRDVIGIAQTGTGKTAAFVLPILQRLMRGPRGRVRAMIVTPTRELAEQIQGVIEALGK 95
Query: 431 HLNAKCHACIGGTNVREDIRQLESGV 508
+ + GG + I++L GV
Sbjct: 96 YTGLRSVTLYGGVGYQGQIQRLRRGV 121
>UniRef50_Q8XKJ8 Cluster: ATP-dependent RNA helicase; n=12;
Clostridium|Rep: ATP-dependent RNA helicase -
Clostridium perfringens
Length = 528
Score = 72.9 bits (171), Expect = 6e-12
Identities = 39/87 (44%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIALG 427
L+G D+I QAQ+GTGKTA F +I+ D S ++ +ALILAPTRELA Q+ + ++ LG
Sbjct: 39 LEGHDIIGQAQTGTGKTAAFGCAIINNADFSGKKKSPKALILAPTRELAIQVNEELVRLG 98
Query: 428 DHLNAKCHACIGGTNVREDIRQLESGV 508
H GG + IR L++GV
Sbjct: 99 KHEKLSVLPIYGGQPIDRQIRALKNGV 125
Score = 50.0 bits (114), Expect = 4e-05
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
+VVGTPGRV D+I R++L N I VLDEADEML+
Sbjct: 127 IVVGTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLN 162
Score = 37.9 bits (84), Expect = 0.19
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
FDD+ LKE LL+ I GFE+PS IQ +I
Sbjct: 6 FDDLGLKESLLKAIKDMGFEEPSQIQAESI 35
>UniRef50_A7HDE9 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Anaeromyxobacter sp. Fw109-5|Rep: DEAD/DEAH box
helicase domain protein - Anaeromyxobacter sp. Fw109-5
Length = 680
Score = 72.5 bits (170), Expect = 7e-12
Identities = 35/82 (42%), Positives = 54/82 (65%)
Frame = +2
Query: 260 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 439
G+DVI ++++GTGKTA F+I IL++I R AL++ PTRELA Q+ + AL H +
Sbjct: 57 GKDVIVRSKTGTGKTAAFAIPILERIADGRRRPSALVMCPTRELAIQVAQEFTALAKHRD 116
Query: 440 AKCHACIGGTNVREDIRQLESG 505
A GG ++ E +++LE+G
Sbjct: 117 LSVVAVYGGASMGEQLQKLEAG 138
Score = 46.0 bits (104), Expect = 7e-04
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
++VGTPGR+YD I RR L + + LDEADEML+
Sbjct: 141 IIVGTPGRIYDHIRRRTLKLDETMVCCLDEADEMLN 176
>UniRef50_Q8D7D0 Cluster: Superfamily II DNA and RNA helicase; n=20;
Gammaproteobacteria|Rep: Superfamily II DNA and RNA
helicase - Vibrio vulnificus
Length = 418
Score = 72.1 bits (169), Expect = 1e-11
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 6/92 (6%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKV 412
LLQGRDV+A AQ+GTGKTA + + ++Q + +T+ + +ALILAPTRELAQQ+
Sbjct: 37 LLQGRDVLAAAQTGTGKTAAYGLPLIQMLSRQSREETAPKHPRALILAPTRELAQQVFDN 96
Query: 413 VIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
+ H GGT++R QL GV
Sbjct: 97 LKQYAQHTELAIVTVYGGTSIRVQQEQLAKGV 128
Score = 35.9 bits (79), Expect = 0.78
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+++ TPGR+ D + + N +++ VLDEAD ML
Sbjct: 130 ILIATPGRLLDHLFTKKTSLNQLQMLVLDEADRML 164
>UniRef50_Q6MR64 Cluster: ATP-dependent RNA helicase; n=5; cellular
organisms|Rep: ATP-dependent RNA helicase - Bdellovibrio
bacteriovorus
Length = 505
Score = 71.7 bits (168), Expect = 1e-11
Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVV 415
+L+G D++ AQ+GTGKTA FS+ ILQ + R+ + LIL PTRELA QI + +
Sbjct: 38 ILEGHDLLGIAQTGTGKTAAFSLPILQNLSKHTRKIEPKSPRCLILTPTRELAIQIHENI 97
Query: 416 IALGDHLNAKCHACIGGTNVREDIRQLESGV 508
A HLN K GG +R L+ GV
Sbjct: 98 EAYSKHLNMKHAVIFGGVGQNPQVRALQGGV 128
Score = 38.7 bits (86), Expect = 0.11
Identities = 15/35 (42%), Positives = 26/35 (74%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+++ TPGR+ D+ ++ L + +++FVLDEAD ML
Sbjct: 130 ILIATPGRLMDLHGQKHLKLDRVEIFVLDEADRML 164
>UniRef50_Q11QF9 Cluster: Inducible ATP-independent RNA helicase;
n=1; Cytophaga hutchinsonii ATCC 33406|Rep: Inducible
ATP-independent RNA helicase - Cytophaga hutchinsonii
(strain ATCC 33406 / NCIMB 9469)
Length = 457
Score = 71.7 bits (168), Expect = 1e-11
Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +2
Query: 263 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-N 439
++V+ AQ+GTGKTA F + +LQQI+ S+++ Q L+L PTREL QQ+ K + ++
Sbjct: 40 KNVVGVAQTGTGKTAAFGLPVLQQINPSLQQTQVLVLVPTRELGQQVAKDLFVFSRYIVR 99
Query: 440 AKCHACIGGTNVREDIRQLES 502
A GG + E I++LE+
Sbjct: 100 IHTEAVYGGKKIEEQIKKLET 120
Score = 47.2 bits (107), Expect = 3e-04
Identities = 18/37 (48%), Positives = 30/37 (81%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
+++V TPGR+ D+I R+A++ + +K +LDEADEML+
Sbjct: 123 HILVATPGRLLDLIARKAVNLSNLKYLILDEADEMLN 159
>UniRef50_P0A9P8 Cluster: Cold-shock DEAD box protein A; n=54;
Gammaproteobacteria|Rep: Cold-shock DEAD box protein A -
Shigella flexneri
Length = 629
Score = 71.7 bits (168), Expect = 1e-11
Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
LL GRDV+ AQ+G+GKTA FS+ +LQ +D ++ Q L+LAPTRELA Q+ + +
Sbjct: 40 LLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSK 99
Query: 431 HL-NAKCHACIGGTNVREDIRQLESG 505
H+ A GG +R L G
Sbjct: 100 HMRGVNVVALYGGQRYDVQLRALRQG 125
Score = 40.7 bits (91), Expect = 0.027
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+VVGTPGR+ D + R L + + VLDEADEML
Sbjct: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEML 162
>UniRef50_Q26CN9 Cluster: ATP-dependent RNA helicase; n=1;
Flavobacteria bacterium BBFL7|Rep: ATP-dependent RNA
helicase - Flavobacteria bacterium BBFL7
Length = 644
Score = 71.3 bits (167), Expect = 2e-11
Identities = 39/81 (48%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Frame = +2
Query: 266 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 442
D I AQ+GTGKTA F + +L ID + RE QALILAPTRELAQQI + + HL
Sbjct: 53 DFIGLAQTGTGKTAAFGLPLLDLIDVNSREVQALILAPTRELAQQICGQMEQMSKHLGKL 112
Query: 443 KCHACIGGTNVREDIRQLESG 505
GG N+ IR + G
Sbjct: 113 NVVPVFGGANIMNQIRDIRRG 133
Score = 44.4 bits (100), Expect = 0.002
Identities = 18/36 (50%), Positives = 27/36 (75%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
++V TPGR+ D++ RR + + +K VLDEADEML+
Sbjct: 136 IIVATPGRLMDLMKRREVKLDALKYMVLDEADEMLN 171
>UniRef50_Q3AFI3 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=1; Carboxydothermus hydrogenoformans
Z-2901|Rep: ATP-dependent RNA helicase, DEAD box family
- Carboxydothermus hydrogenoformans (strain Z-2901 / DSM
6008)
Length = 430
Score = 70.9 bits (166), Expect = 2e-11
Identities = 35/86 (40%), Positives = 52/86 (60%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+L+G +++ QA +GTGKTA + + +LQ+I ++ Q LI+ PTRELA Q+ V LG
Sbjct: 36 ILEGHNLVGQAPTGTGKTAAYLLPVLQRIQRG-KKAQVLIVTPTRELALQVADEVAKLGK 94
Query: 431 HLNAKCHACIGGTNVREDIRQLESGV 508
+L + A GG + IR L GV
Sbjct: 95 YLKVRALAVYGGQAIERQIRGLRQGV 120
Score = 46.8 bits (106), Expect = 4e-04
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
V+VGTPGR+ D I R+ A IK+ +LDEADEML
Sbjct: 122 VIVGTPGRILDHIGRKTFPAAEIKIVILDEADEML 156
>UniRef50_P96614 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=90; Bacilli|Rep: DEAD-box ATP-dependent RNA helicase
ydbR - Bacillus subtilis
Length = 494
Score = 70.9 bits (166), Expect = 2e-11
Identities = 34/82 (41%), Positives = 51/82 (62%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
L +DVI QAQ+GTGKTA F I ++++I+ QA+++APTRELA Q+ + + +G
Sbjct: 38 LSNKDVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQD 97
Query: 434 LNAKCHACIGGTNVREDIRQLE 499
AK GG ++ IR L+
Sbjct: 98 KRAKVLPIYGGQDIGRQIRALK 119
Score = 47.2 bits (107), Expect = 3e-04
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
++VGTPGR+ D I RR + N + V+DEADEML+
Sbjct: 124 IIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLN 159
>UniRef50_Q893G8 Cluster: ATP-dependent RNA helicase; n=4;
Clostridiales|Rep: ATP-dependent RNA helicase -
Clostridium tetani
Length = 386
Score = 70.5 bits (165), Expect = 3e-11
Identities = 37/84 (44%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
L+ +DVI Q+ +G+GKT + + I Q+IDTS RE QA+ILAPT ELA QI K + L +
Sbjct: 38 LENKDVIGQSPTGSGKTLAYLLPIFQKIDTSKREMQAIILAPTHELAMQINKEIQLLSGN 97
Query: 434 --LNAKCHACIGGTNVREDIRQLE 499
++ IG NV+ I +L+
Sbjct: 98 SKVSVTSTPIIGNANVKRQIEKLK 121
Score = 40.3 bits (90), Expect = 0.036
Identities = 15/36 (41%), Positives = 28/36 (77%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+V+VG+ GR+ ++I ++ + A+TIK V+DE D++L
Sbjct: 125 HVIVGSSGRILELIKKKKISAHTIKTIVVDEGDKLL 160
>UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=6;
Alphaproteobacteria|Rep: Dead-box ATP-dependent RNA
helicase - alpha proteobacterium HTCC2255
Length = 531
Score = 70.5 bits (165), Expect = 3e-11
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 5/92 (5%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQ-----IDTSIRECQALILAPTRELAQQIQKV 412
A+L +D++ AQ+GTGKTA F++ ++QQ I R +A+IL+PTRELA QI +
Sbjct: 136 AVLNSKDLVGLAQTGTGKTAAFALPLIQQLLMNPIAIKGRSARAIILSPTRELALQIHEA 195
Query: 413 VIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
++ G L IGG +R+ +R L GV
Sbjct: 196 FVSFGKRLPLNFTHAIGGAPIRKQMRDLSKGV 227
Score = 40.3 bits (90), Expect = 0.036
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++V TPGR+ D++ ++ L + K VLDEAD+ML
Sbjct: 229 ILVATPGRLEDLVDQKGLRLDETKFLVLDEADQML 263
>UniRef50_Q2WF63 Cluster: Putative uncharacterized protein; n=4;
Bilateria|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 561
Score = 70.5 bits (165), Expect = 3e-11
Identities = 35/82 (42%), Positives = 50/82 (60%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+L+G D++ A++GTGKT F+I ILQ++ ALIL PTRELA QI + ALG
Sbjct: 123 ILEGSDILGCARTGTGKTLAFAIPILQKLSVDPYGIYALILTPTRELAFQIAEQFTALGK 182
Query: 431 HLNAKCHACIGGTNVREDIRQL 496
+ KC +GG ++ R+L
Sbjct: 183 PITLKCSVIVGGRSLIHQAREL 204
Score = 33.1 bits (72), Expect = 5.5
Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRR----ALHANTIKLFVLDEADEML 615
+VVV TPGR+ D+I A I+ FVLDEAD ML
Sbjct: 209 HVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRML 248
>UniRef50_Q5GZA1 Cluster: ATP-dependent RNA helicase; n=6;
Xanthomonas|Rep: ATP-dependent RNA helicase -
Xanthomonas oryzae pv. oryzae
Length = 482
Score = 70.1 bits (164), Expect = 4e-11
Identities = 36/85 (42%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+L+G DVIAQA +G+GKTA F + +LQ++D ++ QAL+L PTRELA Q+ K + L
Sbjct: 60 ILRGLDVIAQAPTGSGKTAAFGLGLLQKLDPALTRAQALVLCPTRELADQVGKQLRKLAT 119
Query: 431 HL-NAKCHACIGGTNVREDIRQLES 502
+ N K GG + + LE+
Sbjct: 120 GIPNMKLVVLTGGMPLGPQLASLEA 144
Score = 48.0 bits (109), Expect = 2e-04
Identities = 20/36 (55%), Positives = 27/36 (75%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+VVVGTPGR+ ++ +RALH ++ VLDEAD ML
Sbjct: 148 HVVVGTPGRIQELARKRALHLGGVRTLVLDEADRML 183
>UniRef50_Q188H5 Cluster: Putative ATP-dependent RNA helicase; n=2;
Clostridium difficile|Rep: Putative ATP-dependent RNA
helicase - Clostridium difficile (strain 630)
Length = 381
Score = 70.1 bits (164), Expect = 4e-11
Identities = 35/86 (40%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI--QKVVIAL 424
++Q +D++ +Q+GTGKT + + I ++IDTS RE QALILAPT EL QI Q ++A
Sbjct: 36 IIQNKDLLINSQTGTGKTLAYLLPIFEKIDTSKRETQALILAPTHELVMQITNQVELLAK 95
Query: 425 GDHLNAKCHACIGGTNVREDIRQLES 502
L+ A IG N+++ I+ +++
Sbjct: 96 NAELSVTSLALIGEVNIQKQIKNIKA 121
Score = 39.5 bits (88), Expect = 0.063
Identities = 16/37 (43%), Positives = 27/37 (72%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
++V+G+ GRV D+I ++ L ++ IK VLDE D +L+
Sbjct: 125 HIVIGSCGRVLDLIKQKKLKSHNIKTIVLDEVDNLLN 161
>UniRef50_Q11UP8 Cluster: ATP-dependent RNA helicase; n=1; Cytophaga
hutchinsonii ATCC 33406|Rep: ATP-dependent RNA helicase
- Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB
9469)
Length = 580
Score = 70.1 bits (164), Expect = 4e-11
Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
L+ G+D+ QAQ+GTGKTA F I ++ +D SI + Q+LIL PTRELA Q+ + L
Sbjct: 35 LMTGKDLTGQAQTGTGKTAAFGIPAIEHVDISINQTQSLILCPTRELALQVCTELKKLSK 94
Query: 431 HLNA-KCHACIGGTNVREDIRQLESG 505
+ A GG ++ IR L++G
Sbjct: 95 FKKGLRVLAVYGGESIERQIRDLKAG 120
Score = 48.4 bits (110), Expect = 1e-04
Identities = 20/37 (54%), Positives = 29/37 (78%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
++VVGTPGR+ D + RR L+A+ + +LDEADEML+
Sbjct: 122 HIVVGTPGRIIDHLDRRTLNASHLSQIILDEADEMLN 158
>UniRef50_Q55BR9 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 508
Score = 70.1 bits (164), Expect = 4e-11
Identities = 35/72 (48%), Positives = 48/72 (66%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+L+GRD+IA A++G+GKTA+F+I IL Q+ A+IL PTRELA QI + A+G
Sbjct: 38 ILKGRDIIASAKTGSGKTASFAIPILNQLSEDPYGVFAVILTPTRELAVQIGEQFNAIGA 97
Query: 431 HLNAKCHACIGG 466
+N C IGG
Sbjct: 98 PMNVNCSVVIGG 109
>UniRef50_A2EPG4 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 389
Score = 70.1 bits (164), Expect = 4e-11
Identities = 32/84 (38%), Positives = 57/84 (67%)
Frame = +2
Query: 257 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 436
QG++++ Q+Q+G+GKTATFSI L ++ + + + +I++PTRELA Q + + +LG
Sbjct: 56 QGKNIMFQSQNGSGKTATFSIGTLARLRLTSKTTELIIVSPTRELAIQTENTLKSLG--- 112
Query: 437 NAKCHACIGGTNVREDIRQLESGV 508
A AC+GG ++ D++ L+ G+
Sbjct: 113 -ANTRACVGGNSLGADVKALQKGI 135
Score = 39.9 bits (89), Expect = 0.048
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = +3
Query: 141 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
+V T++ M LK EL+ I G+EKPS IQQRAI
Sbjct: 17 EVYPTWESMKLKPELIEAIKKNGWEKPSPIQQRAI 51
Score = 38.3 bits (85), Expect = 0.15
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
+ V GTPGR+ ++ + A ++ VLDEADEML+
Sbjct: 136 HCVSGTPGRILQLLKEHNIQAEKVQSVVLDEADEMLT 172
>UniRef50_Q5L3G9 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=7; Bacteria|Rep: DEAD-box ATP-dependent RNA helicase
ydbR - Geobacillus kaustophilus
Length = 467
Score = 70.1 bits (164), Expect = 4e-11
Identities = 34/82 (41%), Positives = 51/82 (62%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
LQ +DVI QAQ+GTGKTA F I I+++++ QAL++APTRELA Q+ + + +G
Sbjct: 37 LQNKDVIGQAQTGTGKTAAFGIPIVEKVNVKNSAVQALVVAPTRELAIQVSEELYKIGAV 96
Query: 434 LNAKCHACIGGTNVREDIRQLE 499
+ GG ++ IR L+
Sbjct: 97 KRVRVLPIYGGQDIERQIRALK 118
Score = 44.4 bits (100), Expect = 0.002
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
+V+VGTPGR+ D I R L + VLDEADEML+
Sbjct: 122 HVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLN 158
>UniRef50_UPI00015B4D43 Cluster: PREDICTED: hypothetical protein;
n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
protein - Nasonia vitripennis
Length = 990
Score = 69.7 bits (163), Expect = 5e-11
Identities = 37/82 (45%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Frame = +2
Query: 260 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 439
G D+I +A+SGTGKTA F I L+ ID I Q +ILAPTRE+A QI++V+ +LG +
Sbjct: 61 GFDLIVRAKSGTGKTAVFGIIALEMIDIKISSVQVIILAPTREIAIQIKEVIASLGCEIK 120
Query: 440 A-KCHACIGGTNVREDIRQLES 502
K + IGG + D ++L +
Sbjct: 121 GLKVESFIGGVAMDIDRKKLSN 142
Score = 42.3 bits (95), Expect = 0.009
Identities = 16/37 (43%), Positives = 27/37 (72%)
Frame = +1
Query: 505 CYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
C++ +G PGRV +I + L + ++LFVLDEAD+++
Sbjct: 143 CHIAIGAPGRVKHLIDKGYLKMDHVRLFVLDEADKLM 179
Score = 34.3 bits (75), Expect = 2.4
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 153 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
TF M L +++L G+ GF KPS IQ ++I
Sbjct: 25 TFSQMGLSQQVLNGLLNCGFHKPSPIQHKSI 55
>UniRef50_UPI0000499A01 Cluster: DEAD/DEAH box helicase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: DEAD/DEAH box
helicase - Entamoeba histolytica HM-1:IMSS
Length = 684
Score = 69.7 bits (163), Expect = 5e-11
Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIAL 424
A+L+G D+IA A++G+GKTA + + I+ +++T E ++LI+ PTRELA Q KV L
Sbjct: 46 AILRGNDIIAMARTGSGKTAAYLVPIINRLETHSTEGVRSLIICPTRELALQTIKVFNEL 105
Query: 425 GDHLNAKCHACIGGTNVREDIRQLESG 505
G N K IGG+ + + L SG
Sbjct: 106 GKLTNLKASLIIGGSKLSDQFDNLSSG 132
>UniRef50_Q8R4Z5 Cluster: DEAD-box corepressor DP103 beta; n=5;
Tetrapoda|Rep: DEAD-box corepressor DP103 beta - Mus
musculus (Mouse)
Length = 505
Score = 69.7 bits (163), Expect = 5e-11
Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +2
Query: 260 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 439
G D+I QA+SGTGKT FS L + Q LILAPTRE+A QI V+ A+G +
Sbjct: 100 GLDLIVQAKSGTGKTCVFSTIALDSLILENYSTQILILAPTREIAVQIHSVITAIGIKME 159
Query: 440 A-KCHACIGGTNVREDIRQLE 499
+CH IGGT + +D +L+
Sbjct: 160 GLECHVFIGGTPLSQDKTRLK 180
Score = 44.0 bits (99), Expect = 0.003
Identities = 17/37 (45%), Positives = 28/37 (75%)
Frame = +1
Query: 505 CYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
C++ VG+PGR+ +I L+ +I+LF+LDEAD++L
Sbjct: 182 CHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLL 218
Score = 32.3 bits (70), Expect = 9.6
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI--XPCSKDAMLSLK 281
F+ + L +L G+ A GFE+PS +Q +AI C D ++ K
Sbjct: 65 FESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAK 108
>UniRef50_Q9S531 Cluster: DEAD-box protein; n=4;
Cystobacterineae|Rep: DEAD-box protein - Myxococcus
xanthus
Length = 808
Score = 69.7 bits (163), Expect = 5e-11
Identities = 33/84 (39%), Positives = 52/84 (61%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
++G+D+I ++++GTGKTA F + +L++I R +ALIL PTRELA Q+ + L H
Sbjct: 64 IEGKDLIVRSKTGTGKTAAFGLPLLEKIPADERRVRALILCPTRELALQVADELKMLAKH 123
Query: 434 LNAKCHACIGGTNVREDIRQLESG 505
K A GG ++++ LE G
Sbjct: 124 KGLKIAAIYGGASMKQQEDALEEG 147
Score = 42.7 bits (96), Expect = 0.007
Identities = 20/37 (54%), Positives = 26/37 (70%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
++VGTPGRV+D I R L + VLDEADEML++
Sbjct: 150 IIVGTPGRVFDHINRGNLKLDACDHAVLDEADEMLNQ 186
Score = 32.3 bits (70), Expect = 9.6
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIXPC--SKDAMLSLK 281
FDDMNL E + + G+ P+ +Q RA P KD ++ K
Sbjct: 31 FDDMNLSEPIRLALAERGYTNPTPVQARAFRPAIEGKDLIVRSK 74
>UniRef50_A6NQG8 Cluster: Putative uncharacterized protein; n=2;
Bacteroidales|Rep: Putative uncharacterized protein -
Bacteroides capillosus ATCC 29799
Length = 636
Score = 69.7 bits (163), Expect = 5e-11
Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSI---RECQALILAPTRELAQQIQKVVIAL 424
L GRDV+ AQ+GTGKT F+ ILQ++ I R ++LIL PTRELA QIQ+ A
Sbjct: 36 LAGRDVLGCAQTGTGKTCAFAAPILQRLGGDIPAGRPIRSLILTPTRELALQIQESFEAY 95
Query: 425 GDHLNAKCHACIGGTNVREDIRQLESGV 508
G HL + GG + + +L+ GV
Sbjct: 96 GKHLPLRSAVIFGGVGQQPQVDKLKKGV 123
Score = 36.3 bits (80), Expect = 0.59
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +3
Query: 153 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIXP 251
TF ++ L + +L+ + G+EKPS IQ++AI P
Sbjct: 2 TFRELGLTQSILKALAELGYEKPSPIQEKAIPP 34
Score = 35.9 bits (79), Expect = 0.78
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++V TPGR+ D+ + + + +++FVLDEAD ML
Sbjct: 125 ILVATPGRLLDLQGQGFVDLSRLEIFVLDEADRML 159
>UniRef50_P38712 Cluster: ATP-dependent rRNA helicase RRP3; n=6;
Ascomycota|Rep: ATP-dependent rRNA helicase RRP3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 501
Score = 69.7 bits (163), Expect = 5e-11
Identities = 35/81 (43%), Positives = 50/81 (61%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
L+G D+I AQ+G+GKTA F+I IL ++ A ILAPTRELAQQI++ +LG
Sbjct: 116 LEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSL 175
Query: 434 LNAKCHACIGGTNVREDIRQL 496
+ + +GG N+ + R L
Sbjct: 176 MGVRSTCIVGGMNMMDQARDL 196
Score = 35.5 bits (78), Expect = 1.0
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +3
Query: 126 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIXP 251
+T+ D+ E+F ++NL EL++ + KP+ IQ +AI P
Sbjct: 73 NTNEDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPP 114
>UniRef50_Q9UHI6 Cluster: Probable ATP-dependent RNA helicase DDX20;
n=24; Eumetazoa|Rep: Probable ATP-dependent RNA helicase
DDX20 - Homo sapiens (Human)
Length = 824
Score = 69.7 bits (163), Expect = 5e-11
Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +2
Query: 260 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 439
G D+I QA+SGTGKT FS L + Q LILAPTRE+A QI V+ A+G +
Sbjct: 99 GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKME 158
Query: 440 A-KCHACIGGTNVREDIRQLE 499
+CH IGGT + +D +L+
Sbjct: 159 GLECHVFIGGTPLSQDKTRLK 179
Score = 44.0 bits (99), Expect = 0.003
Identities = 17/37 (45%), Positives = 28/37 (75%)
Frame = +1
Query: 505 CYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
C++ VG+PGR+ +I L+ +I+LF+LDEAD++L
Sbjct: 181 CHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLL 217
Score = 32.3 bits (70), Expect = 9.6
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI--XPCSKDAMLSLK 281
F+ + L +L G+ A GFE+PS +Q +AI C D ++ K
Sbjct: 64 FESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAK 107
>UniRef50_UPI0000585111 Cluster: PREDICTED: hypothetical protein;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 1117
Score = 69.3 bits (162), Expect = 7e-11
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Frame = +2
Query: 263 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 442
+D+I QA+SGTGKT FS+ L+ ID + Q LILAPTRE+A QIQ + A+G +
Sbjct: 4 QDLIVQAKSGTGKTCVFSVIALEGIDLTNPSTQVLILAPTREIAVQIQDTIRAIGCEMEG 63
Query: 443 -KCHACIGGTNVREDIRQLE 499
+ H IGGT D ++L+
Sbjct: 64 LRSHVFIGGTLFGPDRQKLK 83
Score = 48.8 bits (111), Expect = 1e-04
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +1
Query: 505 CYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
C++ VGTPGR+ +I L TI+LFVLDEAD++L
Sbjct: 85 CHIAVGTPGRIKQLIEYEVLKTGTIRLFVLDEADKLL 121
>UniRef50_Q8D6Y8 Cluster: Superfamily II DNA and RNA helicase; n=32;
Gammaproteobacteria|Rep: Superfamily II DNA and RNA
helicase - Vibrio vulnificus
Length = 427
Score = 69.3 bits (162), Expect = 7e-11
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Frame = +2
Query: 257 QGRDVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIA 421
+G D+ A AQ+GTGKTA FS+ ++QQ+ S + +ALI APTRELA+QI + A
Sbjct: 37 RGHDIFATAQTGTGKTAAFSLPLIQQLLESGKSASRKTARALIFAPTRELAEQIADNIKA 96
Query: 422 LGDHLNAKCHACIGGTNVREDIRQLESGV 508
+ N A GG + R LE+GV
Sbjct: 97 YTKYTNLSVAAIFGGRKMSSQERMLENGV 125
>UniRef50_Q6F0U0 Cluster: ATP-dependent RNA helicase; n=1;
Mesoplasma florum|Rep: ATP-dependent RNA helicase -
Mesoplasma florum (Acholeplasma florum)
Length = 666
Score = 69.3 bits (162), Expect = 7e-11
Identities = 33/83 (39%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
L+G+++ ++ +GTGKTA+F + IL++I+ + R QA+I+APTRELA QI + G
Sbjct: 36 LEGKNIFGKSSTGTGKTASFVLPILEKIEPNKRRVQAVIMAPTRELAMQIVNQIRIFGSR 95
Query: 434 L-NAKCHACIGGTNVREDIRQLE 499
+ N IGG ++R+ I++L+
Sbjct: 96 IENLVIAPLIGGADMRDQIKRLK 118
Score = 45.6 bits (103), Expect = 0.001
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+VVGTPGRV D + R+ L + ++ +LDEADEML
Sbjct: 122 IVVGTPGRVNDHLNRKTLKLDDVRTIILDEADEML 156
>UniRef50_Q39MK8 Cluster: DEAD/DEAH box helicase; n=10;
Proteobacteria|Rep: DEAD/DEAH box helicase -
Burkholderia sp. (strain 383) (Burkholderia cepacia
(strain ATCC 17760/ NCIB 9086 / R18194))
Length = 481
Score = 69.3 bits (162), Expect = 7e-11
Identities = 37/92 (40%), Positives = 57/92 (61%), Gaps = 5/92 (5%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKV 412
A+L G+DV+A AQ+GTGKTA F++ +LQ++ S + L+L PTRELA+Q+ +
Sbjct: 34 AVLGGKDVMAGAQTGTGKTAGFALPLLQRLVQHGPAVSSNRARVLVLVPTRELAEQVLQS 93
Query: 413 VIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
IA G L+ + A GG ++ + +L GV
Sbjct: 94 FIAYGKGLDLRFLAAYGGVSINPQMMKLRKGV 125
Score = 36.7 bits (81), Expect = 0.45
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
V+V TPGR+ D+ + A+ + ++ VLDEAD ML
Sbjct: 127 VLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRML 161
>UniRef50_A7JLA3 Cluster: ATP-dependent RNA helicase; n=20;
Francisella|Rep: ATP-dependent RNA helicase -
Francisella tularensis subsp. novicida GA99-3548
Length = 569
Score = 69.3 bits (162), Expect = 7e-11
Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVVIAL 424
+L GRDV+ QAQ+GTGKTA F++ ++ +D + R+ Q L+LAPTRELA Q+ + A
Sbjct: 41 ILSGRDVLGQAQTGTGKTAAFALPLINNMDLASRDRAPQVLVLAPTRELAIQVAEQFEAF 100
Query: 425 GDHLNAKCHACI-GGTNVREDIRQLESGV 508
++ ACI GG IR L+ GV
Sbjct: 101 AKNVPNLDVACIYGGQEYGSQIRALKQGV 129
Score = 41.5 bits (93), Expect = 0.016
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
VVVGT GRV D I + L + ++ VLDEADEML
Sbjct: 131 VVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEML 165
>UniRef50_Q49K88 Cluster: DEAD box RNA helicase; n=1; Toxoplasma
gondii|Rep: DEAD box RNA helicase - Toxoplasma gondii
Length = 479
Score = 69.3 bits (162), Expect = 7e-11
Identities = 34/71 (47%), Positives = 47/71 (66%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
LQGRD+IA A++G+GKTA F + ILQ++ + ALILAPTREL QI + ++A+G
Sbjct: 86 LQGRDIIALAETGSGKTAAFGLPILQRLLQRTQRFYALILAPTRELCLQISQQILAMGGT 145
Query: 434 LNAKCHACIGG 466
L +GG
Sbjct: 146 LGVTVVTLVGG 156
Score = 38.7 bits (86), Expect = 0.11
Identities = 18/38 (47%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLS 618
+VVVG+PGRV D + + + ++K+ VLDEAD +LS
Sbjct: 171 HVVVGSPGRVVDHLQQTKGFSLKSVKVLVLDEADRLLS 208
>UniRef50_A2DVG1 Cluster: DEAD/DEAH box helicase family protein;
n=3; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 478
Score = 69.3 bits (162), Expect = 7e-11
Identities = 35/58 (60%), Positives = 41/58 (70%)
Frame = +2
Query: 263 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 436
R VIAQAQSGTGKT FSI +L +ID S + QAL+LAPTRELA QI V +G +
Sbjct: 131 RHVIAQAQSGTGKTGAFSIGVLSKIDVSQKTTQALVLAPTRELATQIFNVFKEIGSRI 188
Score = 46.4 bits (105), Expect = 6e-04
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 87 SYDG-PPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
SY+ P D +W V+ FD M+L LL+G+Y+YGF PS IQ AI
Sbjct: 69 SYEAMTPAQDDPNFIPNWTTRVDDFDQMDLPPALLQGVYSYGFRAPSEIQAIAI 122
Score = 38.7 bits (86), Expect = 0.11
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
++ + TPGR D+I L K+ VLDEAD+MLS
Sbjct: 215 HICICTPGRALDLIVSGHLRVQNFKMAVLDEADQMLS 251
>UniRef50_Q82T78 Cluster: RhlE; ATP-dependent RNA helicase RhlE;
n=3; Nitrosomonadaceae|Rep: RhlE; ATP-dependent RNA
helicase RhlE - Nitrosomonas europaea
Length = 498
Score = 68.9 bits (161), Expect = 9e-11
Identities = 39/95 (41%), Positives = 59/95 (62%), Gaps = 8/95 (8%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQI----DTSIRECQ----ALILAPTRELAQQI 403
++L G+DV+A AQ+GTGKTA F++ +L ++ +TS+ + ALI+APTRELA QI
Sbjct: 38 SILAGKDVMASAQTGTGKTAGFTLPLLYRLQAYANTSVSPARHPVRALIMAPTRELAMQI 97
Query: 404 QKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
+ V G +L + GG N+ I L++GV
Sbjct: 98 DESVRKYGKYLALRTAVVFGGINIEPQIAALQAGV 132
Score = 39.5 bits (88), Expect = 0.063
Identities = 15/35 (42%), Positives = 27/35 (77%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++V TPGR+ D++ ++A++ + ++ VLDEAD ML
Sbjct: 134 ILVATPGRLLDLVEQKAVNFSKTEILVLDEADRML 168
>UniRef50_A6TX49 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Firmicutes|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 387
Score = 68.9 bits (161), Expect = 9e-11
Identities = 33/83 (39%), Positives = 50/83 (60%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+L+G+D+IA++ +GTGKT + I IL +ID + QA+ILAP+ ELA QI + +
Sbjct: 44 ILEGKDLIAESPTGTGKTLAYLIPILHRIDPESKAVQAVILAPSHELAMQIHQTIEKWTK 103
Query: 431 HLNAKCHACIGGTNVREDIRQLE 499
N IGG N++ I L+
Sbjct: 104 DNNISSEPLIGGANIKRQIENLK 126
>UniRef50_A5FST0 Cluster: DEAD/DEAH box helicase domain protein;
n=8; Bacteria|Rep: DEAD/DEAH box helicase domain protein
- Dehalococcoides sp. BAV1
Length = 561
Score = 68.9 bits (161), Expect = 9e-11
Identities = 36/87 (41%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIR-ECQALILAPTRELAQQIQKVVIALG 427
++ G DVI AQ+GTGKTA +++ I+Q++ ++ R + L++APTRELA QI +LG
Sbjct: 35 IMAGHDVIGLAQTGTGKTAAYALPIIQKMLSTPRGRVRTLVIAPTRELACQISDSFRSLG 94
Query: 428 DHLNAKCHACIGGTNVREDIRQLESGV 508
+ + GG N+ + IR+L SGV
Sbjct: 95 QRARIRECSIYGGVNMDQQIRRLRSGV 121
>UniRef50_P25888 Cluster: Putative ATP-dependent RNA helicase rhlE;
n=122; cellular organisms|Rep: Putative ATP-dependent
RNA helicase rhlE - Escherichia coli (strain K12)
Length = 454
Score = 68.9 bits (161), Expect = 9e-11
Identities = 39/93 (41%), Positives = 56/93 (60%), Gaps = 6/93 (6%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDT------SIRECQALILAPTRELAQQIQK 409
A+L+GRD++A AQ+GTGKTA F++ +LQ + T R +ALIL PTRELA QI +
Sbjct: 34 AVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGE 93
Query: 410 VVIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
V +LN + GG ++ + +L GV
Sbjct: 94 NVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGV 126
Score = 37.5 bits (83), Expect = 0.26
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
V+V TPGR+ D+ + A+ + +++ VLDEAD ML
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRML 162
Score = 32.3 bits (70), Expect = 9.6
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 153 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
+FD + L ++LR + G+ +P+ IQQ+AI
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAI 32
>UniRef50_P0C218 Cluster: Probable ATP-dependent RNA helicase DDX20;
n=9; Euteleostomi|Rep: Probable ATP-dependent RNA
helicase DDX20 - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 761
Score = 68.9 bits (161), Expect = 9e-11
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +2
Query: 260 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 439
G D+I QA+SGTGKT F+ L + Q L+LAPTRE+A QI VV+A+G +
Sbjct: 63 GLDLIVQAKSGTGKTCVFTTIALDSLILENATTQVLVLAPTREIAVQIHAVVMAIGSAME 122
Query: 440 A-KCHACIGGTNVREDIRQLE 499
+CH IGG + +D + L+
Sbjct: 123 GLECHVFIGGRPISQDKQHLK 143
Score = 46.4 bits (105), Expect = 6e-04
Identities = 18/37 (48%), Positives = 29/37 (78%)
Frame = +1
Query: 505 CYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
C++ +G+PGR+ +I AL ++I+LFVLDEAD++L
Sbjct: 145 CHIAIGSPGRIKQLIEMGALMVSSIRLFVLDEADKLL 181
>UniRef50_P21693 Cluster: ATP-independent RNA helicase dbpA; n=195;
cellular organisms|Rep: ATP-independent RNA helicase
dbpA - Escherichia coli (strain K12)
Length = 457
Score = 68.9 bits (161), Expect = 9e-11
Identities = 36/74 (48%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 427
A+L G+DV QA++G+GKTA F + +LQQID S+ + QAL+L PTRELA Q+ + L
Sbjct: 36 AILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLA 95
Query: 428 DHL-NAKCHACIGG 466
L N K GG
Sbjct: 96 RFLPNTKILTLCGG 109
Score = 35.1 bits (77), Expect = 1.4
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+++V TPGR+ D + + + + + V+DEAD ML
Sbjct: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRML 159
>UniRef50_Q3AZR1 Cluster: DEAD/DEAH box helicase-like; n=2;
Synechococcus|Rep: DEAD/DEAH box helicase-like -
Synechococcus sp. (strain CC9902)
Length = 458
Score = 68.5 bits (160), Expect = 1e-10
Identities = 33/90 (36%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIR----ECQALILAPTRELAQQIQKVVI 418
+LQG+D++A AQ+GTGKTA F + I++ + + + +L+L PTRELA Q++
Sbjct: 58 VLQGKDIMASAQTGTGKTAAFILPIIELLRAEDKPKRYQVHSLVLTPTRELAAQVEASAK 117
Query: 419 ALGDHLNAKCHACIGGTNVREDIRQLESGV 508
A +L + A GG ++R +++L+ GV
Sbjct: 118 AYTKYLALRSDAVFGGVSIRPQVKRLQGGV 147
Score = 41.1 bits (92), Expect = 0.021
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++V TPGR+ D+I ++ + + +K+ VLDEAD ML
Sbjct: 149 ILVATPGRLLDLINQKMIRFDNLKVLVLDEADRML 183
>UniRef50_O66866 Cluster: ATP-dependent RNA helicase DeaD; n=1;
Aquifex aeolicus|Rep: ATP-dependent RNA helicase DeaD -
Aquifex aeolicus
Length = 293
Score = 68.5 bits (160), Expect = 1e-10
Identities = 39/84 (46%), Positives = 50/84 (59%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
LQGRD + QA++GTGKTA F + IL + + ALILAPTRELA QI+ +
Sbjct: 7 LQGRDCLIQAKTGTGKTAAFGLPILNSLKEGEK---ALILAPTRELALQIRDNFRDFARY 63
Query: 434 LNAKCHACIGGTNVREDIRQLESG 505
LN + A GGT V D++ L G
Sbjct: 64 LNVRTFAFYGGTKVFGDLKVLRGG 87
Score = 46.0 bits (104), Expect = 7e-04
Identities = 20/35 (57%), Positives = 26/35 (74%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
VV+GTPGR+ D+I R AL + ++ FVLDE D ML
Sbjct: 91 VVIGTPGRIKDLIERGALKTDDVRYFVLDEVDVML 125
>UniRef50_A6VTY7 Cluster: DEAD/DEAH box helicase domain protein;
n=48; root|Rep: DEAD/DEAH box helicase domain protein -
Marinomonas sp. MWYL1
Length = 463
Score = 68.5 bits (160), Expect = 1e-10
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQI----DTSIRECQALILAPTRELAQQIQKVV 415
A+L+G+DV+A AQ+GTGKTA F++ +L+ + + + +AL+L PTRELA Q+ + V
Sbjct: 38 AILEGQDVMAAAQTGTGKTAGFTLPLLEILSKGENAQSNQVRALVLTPTRELAAQVAESV 97
Query: 416 IALGDHLNAKCHACIGGTNVREDIRQLESG 505
G HL+ K GG + + L G
Sbjct: 98 KNYGQHLSLKSTVVFGGVKINPQMMALRRG 127
Score = 38.3 bits (85), Expect = 0.15
Identities = 14/35 (40%), Positives = 26/35 (74%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+++ TPGR+ D+ ++A+ + +++ VLDEAD ML
Sbjct: 130 ILIATPGRMMDLYNQKAVRFDKLEVLVLDEADRML 164
>UniRef50_A6DIU5 Cluster: Probable ATP dependent RNA helicase; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable ATP
dependent RNA helicase - Lentisphaera araneosa HTCC2155
Length = 537
Score = 68.5 bits (160), Expect = 1e-10
Identities = 35/86 (40%), Positives = 51/86 (59%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
L Q D+I QAQ+GTGKTA F + I+Q+I+ +++ QALIL PTRELA Q+ + + +
Sbjct: 37 LSQDHDIIGQAQTGTGKTAAFGLPIVQKIEPGLKKPQALILCPTRELAIQVNEEIKSFCK 96
Query: 431 HLNAKCHACIGGTNVREDIRQLESGV 508
GG + + R L+ GV
Sbjct: 97 GRGITTVTLYGGAPIMDQKRALKKGV 122
Score = 35.5 bits (78), Expect = 1.0
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
+VV TPGR I L ++++ VLDEADEML+
Sbjct: 124 LVVATPGRCIHFIEDGKLELDSLEYLVLDEADEMLN 159
>UniRef50_A4J5M3 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Clostridiales|Rep: DEAD/DEAH box helicase domain
protein - Desulfotomaculum reducens MI-1
Length = 438
Score = 68.5 bits (160), Expect = 1e-10
Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
L+ +D+I Q+Q+G+GKT + + I Q+ID+S RE QALILAPT EL QI K + L +
Sbjct: 38 LKNKDIIGQSQTGSGKTLAYLLPIFQKIDSSKRETQALILAPTHELVMQIDKQIKTLSSN 97
Query: 434 --LNAKCHACIGGTNVREDIRQLE 499
L IG N+ I +L+
Sbjct: 98 AGLTINSTVMIGEVNIVRQIEKLK 121
Score = 41.5 bits (93), Expect = 0.016
Identities = 16/38 (42%), Positives = 29/38 (76%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
+++VG+ GRV ++I R+ + ++TIK V+DEAD +L +
Sbjct: 125 HIIVGSTGRVLELIKRKKISSHTIKTIVIDEADMLLDQ 162
>UniRef50_Q6AMK6 Cluster: Probable ATP-dependent RNA helicase; n=1;
Desulfotalea psychrophila|Rep: Probable ATP-dependent
RNA helicase - Desulfotalea psychrophila
Length = 632
Score = 68.1 bits (159), Expect = 2e-10
Identities = 36/85 (42%), Positives = 48/85 (56%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
LL G D+I QAQ+GTGKTA F + +L ID S + QAL+LAPTRELAQQ+ +
Sbjct: 89 LLAGSDLIGQAQTGTGKTAAFGLPLLNNIDFSKKCVQALVLAPTRELAQQVGDALATYSG 148
Query: 431 HLNAKCHACIGGTNVREDIRQLESG 505
GG++ + + L G
Sbjct: 149 DDGRNVLVVYGGSSYQAQVGGLRRG 173
Score = 47.2 bits (107), Expect = 3e-04
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
VVVGTPGR+ D+I + +L + +K VLDEADEMLS
Sbjct: 176 VVVGTPGRLLDLIRQGSLKLDQLKTLVLDEADEMLS 211
Score = 33.5 bits (73), Expect = 4.2
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 153 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
+F D NLK +L+ + GF +P+ IQ++AI
Sbjct: 56 SFTDFNLKSDLVANLVKLGFSQPTPIQEKAI 86
>UniRef50_Q5QY63 Cluster: ATP-dependent RNA helicase; n=3;
Alteromonadales|Rep: ATP-dependent RNA helicase -
Idiomarina loihiensis
Length = 594
Score = 68.1 bits (159), Expect = 2e-10
Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 427
ALL+G+DV+ +AQ+GTGKTA F + L +ID S+++ Q L++ PTRELA Q+ + +
Sbjct: 41 ALLEGQDVLGEAQTGTGKTAAFGLPALAKIDASVKQTQVLVVTPTRELAIQVAEALEGFA 100
Query: 428 DHLNAKCHACI-GGTNVREDIRQLESG 505
+ A + GG ++ L+ G
Sbjct: 101 AKMRGVGVATVYGGAPFGPQVKALKQG 127
Score = 45.6 bits (103), Expect = 0.001
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
+VVGTPGR+ D++ + L + +K+ VLDEADEML+
Sbjct: 130 IVVGTPGRLIDLLNKNVLQLDGLKVGVLDEADEMLN 165
>UniRef50_Q01PH0 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Solibacter usitatus Ellin6076|Rep: DEAD/DEAH box
helicase domain protein - Solibacter usitatus (strain
Ellin6076)
Length = 422
Score = 68.1 bits (159), Expect = 2e-10
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVVIALG 427
L G+D++A AQ+GTGKT F + +Q + T R+ +ALIL PTRELA QI + ++ +
Sbjct: 37 LAGKDIVATAQTGTGKTLAFLLPTIQLLSTEPRQPGVRALILTPTRELALQINEALLQIA 96
Query: 428 DHLNAKCHACIGGTNVREDIRQLESG 505
+ +GG N R +R + G
Sbjct: 97 RGTGIRAAVAVGGLNERSQLRDIRGG 122
Score = 44.4 bits (100), Expect = 0.002
Identities = 16/35 (45%), Positives = 27/35 (77%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+VV TPGR+YD ++R ++ T+++ +LDE+D ML
Sbjct: 125 IVVATPGRLYDFMSRGLINLTTVRMLILDESDRML 159
>UniRef50_A6TTG0 Cluster: DEAD/DEAH box helicase domain protein;
n=3; Clostridiaceae|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 549
Score = 68.1 bits (159), Expect = 2e-10
Identities = 36/86 (41%), Positives = 51/86 (59%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
LL RDV+AQAQ+GTGKT F + IL++++ QALI+ PTRELA QI L +
Sbjct: 37 LLAQRDVMAQAQTGTGKTLAFILPILERVNVEKPTIQALIITPTRELAIQITAETKKLAE 96
Query: 431 HLNAKCHACIGGTNVREDIRQLESGV 508
A GG +V + +R+L+ +
Sbjct: 97 VKGINILAAYGGQDVEQQLRKLKGSI 122
Score = 43.2 bits (97), Expect = 0.005
Identities = 15/36 (41%), Positives = 27/36 (75%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++++GTPGR+ D + R+ ++ + + VLDEAD+ML
Sbjct: 123 HIIIGTPGRLLDHLRRKTINLGKLSMLVLDEADQML 158
>UniRef50_Q87HW1 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=6; Vibrio|Rep: ATP-dependent RNA helicase,
DEAD box family - Vibrio parahaemolyticus
Length = 421
Score = 67.7 bits (158), Expect = 2e-10
Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVVIAL 424
+L+G+D++A AQ+GTGKTA F + I+Q + R ALIL PTRELAQQ+ +
Sbjct: 41 VLEGKDLLAAAQTGTGKTAAFGLPIIQAVQQKKRNGTPHALILVPTRELAQQVFDNLTQY 100
Query: 425 GDHLNAKCHACIGGTNVREDIRQLESG 505
+H + + GGT++ +LE G
Sbjct: 101 AEHTDLRIVCVYGGTSIGVQKNKLEEG 127
>UniRef50_Q81QF0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=25; Firmicutes|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 450
Score = 67.7 bits (158), Expect = 2e-10
Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI-QKVVIALG 427
+L G+D+I QA++GTGKT F + IL++ID + QALI+APTRELA QI ++ L
Sbjct: 39 ILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLV 98
Query: 428 DHLNAKCHACIGGTNVREDIRQLE 499
+ A GG +V + +R+L+
Sbjct: 99 QREDINVLAIYGGQDVAQQLRKLK 122
Score = 40.3 bits (90), Expect = 0.036
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++VV TPGR+ D I R + + + VLDEAD+ML
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQML 161
>UniRef50_Q6MN50 Cluster: ATP-dependent RNA helicase; n=1;
Bdellovibrio bacteriovorus|Rep: ATP-dependent RNA
helicase - Bdellovibrio bacteriovorus
Length = 656
Score = 67.7 bits (158), Expect = 2e-10
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +2
Query: 251 LLQG-RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 427
LL G D I A +GTGKTA F I +++ ID+++++ QAL+L+PTRELA Q+ + + LG
Sbjct: 78 LLAGANDFIGLASTGTGKTAAFGIPLIENIDSTVKDTQALVLSPTRELALQVAEQLTLLG 137
Query: 428 DHLNAKCHACIGGTNVREDIRQLESG 505
+ GG + R I ++ G
Sbjct: 138 KKKGVRVVTIYGGASYRTQIDGIKRG 163
Score = 44.0 bits (99), Expect = 0.003
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
++VV TPGR+ D + ++ + ++K VLDEADEMLS
Sbjct: 165 HIVVATPGRLVDFLEQKMIKLQSVKTVVLDEADEMLS 201
>UniRef50_Q9LKL6 Cluster: DEAD box protein P68; n=5;
Viridiplantae|Rep: DEAD box protein P68 - Pisum sativum
(Garden pea)
Length = 622
Score = 67.7 bits (158), Expect = 2e-10
Identities = 41/91 (45%), Positives = 57/91 (62%), Gaps = 6/91 (6%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQ--IDTSIRECQ---ALILAPTRELAQQIQKVVI 418
L GRD++ A++G+GKTA F+I +LQ + IR AL+LAPTRELAQQI+K V
Sbjct: 153 LSGRDLLGCAETGSGKTAAFTIPMLQHCLVQPPIRRGDGPLALVLAPTRELAQQIEKEVQ 212
Query: 419 ALGDHLNA-KCHACIGGTNVREDIRQLESGV 508
A L + K +GGTN+ + +L +GV
Sbjct: 213 AFSRSLESLKNCIVVGGTNIEKQRSELRAGV 243
>UniRef50_Q8A2K2 Cluster: ATP-dependent RNA helicase; n=10; cellular
organisms|Rep: ATP-dependent RNA helicase - Bacteroides
thetaiotaomicron
Length = 647
Score = 67.3 bits (157), Expect = 3e-10
Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 436
+ DV+A AQ+GTGKTA F + +LQQID R Q+LIL PTREL QI + ++
Sbjct: 39 ENNDVVALAQTGTGKTAAFGLPLLQQIDVKNRVPQSLILCPTRELCLQIAGDLNDYSKYI 98
Query: 437 NA-KCHACIGGTNVREDIRQLESGV 508
+ K GG+++ IR L+ GV
Sbjct: 99 DGLKVLPVYGGSSIDSQIRSLKRGV 123
Score = 42.7 bits (96), Expect = 0.007
Identities = 16/37 (43%), Positives = 28/37 (75%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
+++V TPGR+ D++ R+ + +T+ V+DEADEML+
Sbjct: 124 HIIVATPGRLLDLMERKTVSLSTVHNIVMDEADEMLN 160
>UniRef50_Q185X0 Cluster: ATP-dependent RNA helicase; n=3;
Clostridium difficile|Rep: ATP-dependent RNA helicase -
Clostridium difficile (strain 630)
Length = 497
Score = 67.3 bits (157), Expect = 3e-10
Identities = 29/86 (33%), Positives = 56/86 (65%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
LL+G++++ ++++G+GKTA+F+I + + I+ QALI+ PTRELA Q++ + +G
Sbjct: 37 LLKGQNLVVRSKTGSGKTASFAIPLCENINVDYNNIQALIVVPTRELALQVKDEISDIGR 96
Query: 431 HLNAKCHACIGGTNVREDIRQLESGV 508
+C A G ++++ I +L+ V
Sbjct: 97 LKKVRCSAIFGKQSIKDQIAELKQRV 122
Score = 41.5 bits (93), Expect = 0.016
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
++VV TPGR+ D I R ++ +K V+DEAD+M ++
Sbjct: 123 HIVVATPGRILDHINRGSIKLENVKYLVIDEADKMFNK 160
>UniRef50_A7HKQ8 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Fervidobacterium nodosum Rt17-B1|Rep: DEAD/DEAH box
helicase domain protein - Fervidobacterium nodosum
Rt17-B1
Length = 571
Score = 67.3 bits (157), Expect = 3e-10
Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIAL 424
AL +D+IAQAQ+GTGKTA F I +L++ID + +A+I+ PTRELA QI + + +L
Sbjct: 52 ALSTDKDLIAQAQTGTGKTAAFGIPLLERIDFKANKFVKAIIVTPTRELALQIFEELKSL 111
Query: 425 GDHLNAKCHACIGGTNVREDIRQLESGV 508
K GG ++ + + LE GV
Sbjct: 112 KGTKRVKITTLYGGQSLEKQFKDLEKGV 139
Score = 41.5 bits (93), Expect = 0.016
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+VVGTPGR+ D + R L + ++ VLDEAD ML
Sbjct: 141 IVVGTPGRIIDHLNRDTLDLSHVEYLVLDEADRML 175
Score = 33.1 bits (72), Expect = 5.5
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 150 ETFDDMNLKEELLRGIYAYGFEKPSAIQQ 236
E F+D L EE+L I G+EKP+ IQ+
Sbjct: 18 ERFEDFGLSEEILLAIQKKGYEKPTEIQK 46
>UniRef50_A5G1U8 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Acidiphilium cryptum JF-5|Rep: DEAD/DEAH box
helicase domain protein - Acidiphilium cryptum (strain
JF-5)
Length = 525
Score = 67.3 bits (157), Expect = 3e-10
Identities = 38/91 (41%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSI-----RECQALILAPTRELAQQIQKVV 415
+L+G D++ AQ+GTGKTA F + IL +I + R C+AL+LAPTRELA QI
Sbjct: 91 MLEGHDLVGIAQTGTGKTAAFVLPILHRIAANRARPAPRACRALVLAPTRELATQIADAA 150
Query: 416 IALGDHLNAKCHACIGGTNVREDIRQLESGV 508
G IGG R++ESGV
Sbjct: 151 RTYGKFTRPSVAVVIGGAKPGPQARRMESGV 181
Score = 35.1 bits (77), Expect = 1.4
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++V TPGR+ D + + + ++ VLDEAD+ML
Sbjct: 183 LLVATPGRLLDHVAAGVIRLDAVETVVLDEADQML 217
>UniRef50_Q3LWE1 Cluster: Translation initiation factor 4A2; n=1;
Bigelowiella natans|Rep: Translation initiation factor
4A2 - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 378
Score = 67.3 bits (157), Expect = 3e-10
Identities = 36/83 (43%), Positives = 49/83 (59%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
LL+GRD+I Q+ SGTGKT + I Q+ SI Q LIL PTREL+ QI+ V L
Sbjct: 44 LLKGRDIIYQSPSGTGKTTCYIIGTSNQLCQSINSPQCLILVPTRELSIQIRNVFNVLNI 103
Query: 431 HLNAKCHACIGGTNVREDIRQLE 499
+ +C GG + ED++ L+
Sbjct: 104 YTKNSITSCHGGRWLGEDLKNLK 126
Score = 36.7 bits (81), Expect = 0.45
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +1
Query: 514 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
+VGTPGRV ++ +L I+ FVLDEAD ++++
Sbjct: 132 IVGTPGRVLHLLQIGSLAITKIRTFVLDEADILMNK 167
>UniRef50_UPI0000D55AB0 Cluster: PREDICTED: similar to Probable
ATP-dependent RNA helicase DDX20 (DEAD box protein 20)
(DEAD box protein DP 103) (Component of gems 3)
(Gemin-3) (Regulator of steroidogenic factor 1)
(ROSF-1); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to Probable ATP-dependent RNA helicase DDX20
(DEAD box protein 20) (DEAD box protein DP 103)
(Component of gems 3) (Gemin-3) (Regulator of
steroidogenic factor 1) (ROSF-1) - Tribolium castaneum
Length = 688
Score = 66.9 bits (156), Expect = 4e-10
Identities = 33/79 (41%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Frame = +2
Query: 260 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 439
G D+I +++SGTGKT FS L+ ++T+ Q LIL PTRE+A QI+ V+ ++G H+N
Sbjct: 61 GFDLIVKSKSGTGKTLVFSTIALETVNTAKDHLQVLILVPTREIAVQIEDVLRSVGCHVN 120
Query: 440 A-KCHACIGGTNVREDIRQ 493
K + IGG + +D+++
Sbjct: 121 GLKIESFIGGRPLEDDLKK 139
Score = 46.8 bits (106), Expect = 4e-04
Identities = 19/37 (51%), Positives = 27/37 (72%)
Frame = +1
Query: 505 CYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
C++ VG PGRV ++ AL N +KLFVLDEAD+++
Sbjct: 143 CHIAVGAPGRVKHLLKMGALTTNLVKLFVLDEADKLM 179
>UniRef50_Q64VR8 Cluster: ATP-dependent RNA helicase DeaD; n=14;
Bacteria|Rep: ATP-dependent RNA helicase DeaD -
Bacteroides fragilis
Length = 427
Score = 66.9 bits (156), Expect = 4e-10
Identities = 40/88 (45%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRE-CQALILAPTRELAQQIQKVVIAL 424
LLQG+D++ AQ+GTGKTA FSI ILQ++ T R+ +AL+L PTRELA QI + A
Sbjct: 35 LLQGKDLLGCAQTGTGKTAAFSIPILQKLYKTDHRKGIKALVLTPTRELAIQIGESFEAY 94
Query: 425 GDHLNAKCHACIGGTNVREDIRQLESGV 508
G + K GG + L SG+
Sbjct: 95 GRYTGLKHAVIFGGVGQKPQTDALRSGI 122
Score = 39.5 bits (88), Expect = 0.063
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++V TPGR+ D+I++ + +++ FVLDEAD ML
Sbjct: 124 ILVATPGRLLDLISQGFISLSSLDFFVLDEADRML 158
>UniRef50_Q1N6E2 Cluster: ATP-dependent RNA helicase; n=1;
Oceanobacter sp. RED65|Rep: ATP-dependent RNA helicase -
Oceanobacter sp. RED65
Length = 475
Score = 66.9 bits (156), Expect = 4e-10
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 6/92 (6%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVV 415
L GRD+I +AQ+GTGKTA F I++LQ++ + E +ALILAPTRELA QI K
Sbjct: 133 LAGRDIIGKAQTGTGKTAAFLITVLQKLLTVKPEERFASEPRALILAPTRELAMQIAKDA 192
Query: 416 IALGDHLNAKCHACIGGTNVREDIRQLESGVM 511
L + + +GG + + QLE+ V+
Sbjct: 193 DGLSKYADLNIVTVLGGVDYDKQKEQLENEVV 224
Score = 37.5 bits (83), Expect = 0.26
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
VVV TPGR+ D + + ++ + +++ V+DEAD ML
Sbjct: 226 VVVATPGRLLDYLQQGIVYLDQVEMLVIDEADRML 260
>UniRef50_Q0HYG8 Cluster: DEAD/DEAH box helicase domain protein;
n=62; Proteobacteria|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain MR-7)
Length = 549
Score = 66.9 bits (156), Expect = 4e-10
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIR----ECQALILAPTRELAQQIQKVV 415
A+L G+DV+A AQ+GTGKTA F++ +L+ + + + +AL+L PTRELA Q+ + V
Sbjct: 34 AVLTGKDVMAAAQTGTGKTAGFTLPLLELLSKGNKAKAGQIRALVLTPTRELAAQVSESV 93
Query: 416 IALGDHLNAKCHACIGGTNVREDIRQLESGV 508
G +L + GG + I++L GV
Sbjct: 94 ETYGKYLPLRSAVVFGGVPINPQIQKLRHGV 124
Score = 39.9 bits (89), Expect = 0.048
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
V+V TPGR+ D++ + + N +++ VLDEAD ML
Sbjct: 126 VLVATPGRLLDLVQQNVVKFNQLEILVLDEADRML 160
>UniRef50_Q0HKH0 Cluster: DEAD/DEAH box helicase domain protein;
n=37; Gammaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Shewanella sp. (strain MR-4)
Length = 427
Score = 66.9 bits (156), Expect = 4e-10
Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 8/94 (8%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQK 409
A+L GRDV+A A +G+GKTA F++ +LQ++ + S + + L+L PTRELAQQ+
Sbjct: 42 AVLSGRDVLAGANTGSGKTAAFAVPLLQRLFEAKTAEKSAGQVRCLVLVPTRELAQQVAD 101
Query: 410 VVIALGDHLNA--KCHACIGGTNVREDIRQLESG 505
++ H N K A GG +V ++ L +G
Sbjct: 102 SFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAG 135
Score = 41.9 bits (94), Expect = 0.012
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
V+V TPGR+ D++ AL N + VLDEAD MLS
Sbjct: 138 VLVATPGRLLDLLASNALKLNRVLALVLDEADRMLS 173
>UniRef50_A4BET4 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Reinekea sp. MED297|Rep: DEAD/DEAH box helicase-like
protein - Reinekea sp. MED297
Length = 579
Score = 66.9 bits (156), Expect = 4e-10
Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
LL G DV+ AQ+GTGKTA FS+ +L +IDT+ + QAL+L PTRELA Q+ +
Sbjct: 39 LLDGNDVLGLAQTGTGKTAAFSLPLLSRIDTTKNKPQALVLCPTRELAIQVAEAFQTYAR 98
Query: 431 HL-NAKCHACIGGTNVREDIRQLE 499
+ N GG ++R +R L+
Sbjct: 99 GVDNFHVLPIYGGADMRNQLRALK 122
Score = 44.4 bits (100), Expect = 0.002
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
V+VGTPGRV D + R L + +K VLDEADEML
Sbjct: 127 VIVGTPGRVMDHLRRGTLDLSDLKHLVLDEADEML 161
>UniRef50_A3WD13 Cluster: DNA and RNA helicase; n=2;
Alphaproteobacteria|Rep: DNA and RNA helicase -
Erythrobacter sp. NAP1
Length = 484
Score = 66.9 bits (156), Expect = 4e-10
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATF---SISILQQIDTSI--RECQALILAPTRELAQQIQKVV 415
+L+GRD++ AQ+GTGKTA F SI L++ D I + C+ L+LAPTREL QI
Sbjct: 36 VLEGRDLLGIAQTGTGKTAAFMLPSIDRLREADNRIPFKSCRMLVLAPTRELVSQIAASA 95
Query: 416 IALGDHLNAKCHACIGGTNVREDIRQLESG 505
G K + +GGT+V +D +L G
Sbjct: 96 KDYGALAGLKVQSIVGGTSVNKDRNKLHRG 125
Score = 41.9 bits (94), Expect = 0.012
Identities = 15/35 (42%), Positives = 28/35 (80%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+++ TPGR+ D+I ++A + ++++ VLDEAD+ML
Sbjct: 128 ILIATPGRLLDLIDQKAFNLGSVEVLVLDEADQML 162
>UniRef50_A0KTC9 Cluster: DEAD/DEAH box helicase domain protein;
n=132; Bacteria|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain ANA-3)
Length = 578
Score = 66.9 bits (156), Expect = 4e-10
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIR----ECQALILAPTRELAQQIQKVV 415
A+L G+DV+A AQ+GTGKTA F++ +L+ + + + +AL+L PTRELA Q+ + V
Sbjct: 34 AVLTGKDVMAAAQTGTGKTAGFTLPLLELLSKGNKAKAGQIRALVLTPTRELAAQVSESV 93
Query: 416 IALGDHLNAKCHACIGGTNVREDIRQLESGV 508
G +L + GG + I++L GV
Sbjct: 94 ETYGKYLPLRSAVVFGGVPINPQIQKLRHGV 124
Score = 39.5 bits (88), Expect = 0.063
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
V+V TPGR+ D+ ++A+ N +++ VLDEAD ML
Sbjct: 126 VLVATPGRLLDLEQQKAVKFNQLEVLVLDEADRML 160
>UniRef50_Q4P3U9 Cluster: ATP-dependent rRNA helicase RRP3; n=20;
Eukaryota|Rep: ATP-dependent rRNA helicase RRP3 -
Ustilago maydis (Smut fungus)
Length = 551
Score = 66.9 bits (156), Expect = 4e-10
Identities = 35/74 (47%), Positives = 48/74 (64%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
LQ RDVI AQ+G+GKTA F+I ILQ + + + A +LAPTRELA QI + V ALG
Sbjct: 139 LQARDVIGLAQTGSGKTAAFTIPILQALWDNPKPFFACVLAPTRELAYQISQQVEALGST 198
Query: 434 LNAKCHACIGGTNV 475
+ + +GG ++
Sbjct: 199 IGVRSATIVGGMDM 212
>UniRef50_UPI0000DAE40A Cluster: hypothetical protein
Rgryl_01000266; n=1; Rickettsiella grylli|Rep:
hypothetical protein Rgryl_01000266 - Rickettsiella
grylli
Length = 433
Score = 66.5 bits (155), Expect = 5e-10
Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQIQKVVIAL 424
A+LQGRDV+ AQ+GTGKTA +++ +LQQ+ + + +ALIL+PTR+LA QI +
Sbjct: 46 AILQGRDVVGLAQTGTGKTAAYALPLLQQLTEGPPGQLRALILSPTRDLADQICVAMNHF 105
Query: 425 GDHLNAKCHACIGG-TNVREDIRQLESGV 508
G + +C GG N + L GV
Sbjct: 106 GRQTHLRCATIYGGKINYTRQYQLLTGGV 134
>UniRef50_O83749 Cluster: ATP-dependent RNA helicase; n=2;
Treponema|Rep: ATP-dependent RNA helicase - Treponema
pallidum
Length = 649
Score = 66.5 bits (155), Expect = 5e-10
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +2
Query: 251 LLQG-RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 427
LL G ++IA+A++GTGKTA F + ++Q++ + AL+L PTRELA Q+ + +L
Sbjct: 80 LLAGDANIIAKARTGTGKTAAFGLPLIQELGSPCEHPGALVLVPTRELAAQVASELSSLR 139
Query: 428 DHLNAKCHACIGGTNVREDIRQLESG 505
+ H GG ++ E +R LE G
Sbjct: 140 IQKIPRIHTVYGGVSIAEQLRNLEQG 165
Score = 44.0 bits (99), Expect = 0.003
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
++VGT GRV D I R +L + ++ F+LDEADEML+
Sbjct: 168 IIVGTTGRVIDHIERGSLELSYLRYFILDEADEMLN 203
>UniRef50_Q4IZ16 Cluster: DEAD/DEAH box helicase:Helicase,
C-terminal:DbpA RNA binding domain; n=18;
Pseudomonadaceae|Rep: DEAD/DEAH box helicase:Helicase,
C-terminal:DbpA RNA binding domain - Azotobacter
vinelandii AvOP
Length = 575
Score = 66.5 bits (155), Expect = 5e-10
Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+L G D+I QAQ+GTGKTA F++ +L +ID + RE Q LILAPTRELA Q+
Sbjct: 57 ILAGHDMIGQAQTGTGKTAAFALPMLSRIDPARREPQLLILAPTRELALQVATAFETYAS 116
Query: 431 HL-NAKCHACIGGTNVREDIRQLESG 505
L A GG + ++ L G
Sbjct: 117 QLPGVGVVAVYGGAPMGPQLKALRQG 142
Score = 38.3 bits (85), Expect = 0.15
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++V TPGR+ D + R +T+K VLDEADEML
Sbjct: 145 ILVATPGRLCDHLRRDEQLLSTVKHLVLDEADEML 179
>UniRef50_Q2BP56 Cluster: Putative ATP-dependent RNA helicase; n=1;
Neptuniibacter caesariensis|Rep: Putative ATP-dependent
RNA helicase - Neptuniibacter caesariensis
Length = 427
Score = 66.5 bits (155), Expect = 5e-10
Identities = 34/89 (38%), Positives = 57/89 (64%), Gaps = 4/89 (4%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTS----IRECQALILAPTRELAQQIQKVVI 418
+L+G D++A+AQ+GTGKTA+F++ I++++ + R +AL+LAPTRELA Q+ +
Sbjct: 38 VLRGDDLLAEAQTGTGKTASFALPIIEKLSKNPIDGYRPVRALVLAPTRELAIQVADNTL 97
Query: 419 ALGDHLNAKCHACIGGTNVREDIRQLESG 505
G L + + GG V I++L+ G
Sbjct: 98 EYGRDLGMRVISVYGGVPVENQIKRLKRG 126
Score = 38.7 bits (86), Expect = 0.11
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++V TPGR+ D++ ++A+ ++ VLDEAD ML
Sbjct: 129 ILVATPGRLLDLLRQKAISLEKLEYLVLDEADRML 163
>UniRef50_Q18W60 Cluster: DEAD/DEAH box helicase-like; n=2;
Desulfitobacterium hafniense|Rep: DEAD/DEAH box
helicase-like - Desulfitobacterium hafniense (strain
DCB-2)
Length = 425
Score = 66.5 bits (155), Expect = 5e-10
Identities = 39/92 (42%), Positives = 53/92 (57%), Gaps = 6/92 (6%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKV 412
LL+G D++ AQ+GTGKTA F+I ILQ + R+ +AL+LAPTRELA QI +
Sbjct: 35 LLEGLDLLGCAQTGTGKTAAFAIPILQSLAMGQGLLKGKRQIRALVLAPTRELATQIAES 94
Query: 413 VIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
A G +L + GG R+LE G+
Sbjct: 95 FTAYGVNLPLRTLVIFGGVGQAPQTRKLEKGI 126
Score = 37.1 bits (82), Expect = 0.34
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++V TPGR+ D+I + + + ++ FVLDE D+ML
Sbjct: 128 ILVATPGRLLDLINQGFIDLSHVEHFVLDETDQML 162
>UniRef50_A4M6V6 Cluster: DEAD/DEAH box helicase domain protein;
n=2; cellular organisms|Rep: DEAD/DEAH box helicase
domain protein - Petrotoga mobilis SJ95
Length = 530
Score = 66.5 bits (155), Expect = 5e-10
Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Frame = +2
Query: 251 LLQGRD-VIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 427
LL G++ VI QAQ+GTGKTA F I +++++D + QAL+L PTRELA Q+ + +L
Sbjct: 36 LLSGKNNVIGQAQTGTGKTAAFGIPLIERLDEKANDVQALVLTPTRELALQVCNEIDSLK 95
Query: 428 DHLNAKCHACIGGTNVREDIRQLESGV 508
+ GG ++ IR L+ V
Sbjct: 96 GNKRLNLLPVYGGVSIGNQIRALKRRV 122
Score = 44.0 bits (99), Expect = 0.003
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+VVGTPGR+ D + R L IK V+DEADEML
Sbjct: 124 LVVGTPGRIIDHLNRGTLDITKIKYLVIDEADEML 158
>UniRef50_A4C0F9 Cluster: ATP-dependent RNA helicase; n=6;
Bacteroidetes|Rep: ATP-dependent RNA helicase -
Polaribacter irgensii 23-P
Length = 447
Score = 66.5 bits (155), Expect = 5e-10
Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Frame = +2
Query: 266 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 445
D++A A++GTGKTA F + +LQ ID + QA+ILAPTREL QQI +I+ +H +
Sbjct: 43 DIVALAKTGTGKTAAFGLPLLQLIDVNNDAIQAIILAPTRELGQQIAANLISFAEHTSQV 102
Query: 446 CHACI-GGTNVREDIRQLE 499
A + GG ++ I +L+
Sbjct: 103 SIATLCGGIPIKPQIERLK 121
Score = 46.0 bits (104), Expect = 7e-04
Identities = 18/40 (45%), Positives = 29/40 (72%)
Frame = +1
Query: 499 EWCYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
E +++V TPGR+ D++ R A+ +I F+LDEADEM++
Sbjct: 122 EATHIIVATPGRLADLVKREAIDIKSISYFILDEADEMVT 161
>UniRef50_A4V6K5 Cluster: DEAD box polypeptide 19 protein; n=3;
Platyhelminthes|Rep: DEAD box polypeptide 19 protein -
Dugesia japonica (Planarian)
Length = 434
Score = 66.5 bits (155), Expect = 5e-10
Identities = 31/61 (50%), Positives = 44/61 (72%)
Frame = +2
Query: 257 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 436
Q +++IAQ+QSGTGKTATF +++L +ID + CQ L +APTREL QI +V I + +
Sbjct: 86 QPKNLIAQSQSGTGKTATFLLTMLSKIDVNDPFCQCLCMAPTRELVNQIAEVAIIMSKFM 145
Query: 437 N 439
N
Sbjct: 146 N 146
Score = 45.6 bits (103), Expect = 0.001
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = +3
Query: 147 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
V++F+D+ LK ELL GI + GF KPS+IQ+RA+
Sbjct: 47 VKSFEDLQLKSELLNGISSMGFRKPSSIQERAL 79
>UniRef50_Q55RL6 Cluster: Putative uncharacterized protein; n=2;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 606
Score = 66.5 bits (155), Expect = 5e-10
Identities = 38/90 (42%), Positives = 58/90 (64%), Gaps = 6/90 (6%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA----LILAPTRELAQQIQKVVI 418
+L G DV+AQA++GTGKT F + ++Q++ ++ A LIL+PTRELAQQI +V
Sbjct: 101 ILAGDDVLAQAKTGTGKTLAFLVPVVQRLLSAPMPPSALTSILILSPTRELAQQINEVAE 160
Query: 419 ALGDHLNAK--CHACIGGTNVREDIRQLES 502
+ L+ K + +GGTN+ DI+ L+S
Sbjct: 161 RMSTALSKKFGTRSVVGGTNMDRDIKNLKS 190
Score = 33.1 bits (72), Expect = 5.5
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHAN--TIKLFVLDEADEML 615
++V TPGR+ D++ + A +K+ VLDEAD +L
Sbjct: 195 ILVATPGRLLDLMENGGIKARFAQLKMIVLDEADRLL 231
>UniRef50_UPI0001509D93 Cluster: DEAD/DEAH box helicase family
protein; n=1; Tetrahymena thermophila SB210|Rep:
DEAD/DEAH box helicase family protein - Tetrahymena
thermophila SB210
Length = 476
Score = 66.1 bits (154), Expect = 6e-10
Identities = 34/83 (40%), Positives = 47/83 (56%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
+ G+DV+ QA++GTGKTA F +S+L Q+ + L+L TRELA QI+ LG
Sbjct: 73 IHGKDVLCQAKAGTGKTAVFVLSVLNQLPDDAKPFSCLVLCHTRELAFQIKNEFKRLGKF 132
Query: 434 LNAKCHACIGGTNVREDIRQLES 502
N K A GG DI L++
Sbjct: 133 TNFKVKAVYGGVEESVDIHTLKT 155
Score = 36.7 bits (81), Expect = 0.45
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +3
Query: 153 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
+F+D +LK++LLR + GFE+PS +Q + I
Sbjct: 39 SFNDFSLKQDLLRSVKEAGFERPSEVQHQCI 69
>UniRef50_Q41FS1 Cluster: IMP dehydrogenase/GMP reductase:Helicase,
C-terminal:DEAD/DEAH box helicase, N-terminal; n=1;
Exiguobacterium sibiricum 255-15|Rep: IMP
dehydrogenase/GMP reductase:Helicase,
C-terminal:DEAD/DEAH box helicase, N-terminal -
Exiguobacterium sibiricum 255-15
Length = 450
Score = 66.1 bits (154), Expect = 6e-10
Identities = 29/54 (53%), Positives = 43/54 (79%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQK 409
A L+GRD+I Q+Q+GTGKT +F + I+Q ++ ++E QA+I+APTRELA QI +
Sbjct: 35 AALKGRDIIGQSQTGTGKTLSFLLPIVQNVNPELQEMQAIIVAPTRELAWQIHE 88
Score = 44.0 bits (99), Expect = 0.003
Identities = 16/35 (45%), Positives = 27/35 (77%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+V+GTPGR+ D+ +AL + +K +++DEAD+ML
Sbjct: 125 IVIGTPGRILDLFKEQALKPHFVKHYIIDEADQML 159
>UniRef50_Q15T34 Cluster: DEAD/DEAH box helicase-like; n=1;
Pseudoalteromonas atlantica T6c|Rep: DEAD/DEAH box
helicase-like - Pseudoalteromonas atlantica (strain T6c
/ BAA-1087)
Length = 458
Score = 66.1 bits (154), Expect = 6e-10
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI----DTSIRECQALILAPTRELAQQIQKVVI 418
+L D++A AQ+GTGKTA F++ +LQ++ T ++ ++LI+ PTRELA Q+ V
Sbjct: 35 VLAQHDLLAVAQTGTGKTAAFTLPLLQRLAAKQSTKVQGVRSLIVTPTRELAAQVAISVE 94
Query: 419 ALGDHLNAKCHACIGGTNVREDIRQLESGV 508
LN + A GG + I QL+ GV
Sbjct: 95 IYSTQLNIRSFAVYGGVRIEPQIAQLQEGV 124
Score = 42.7 bits (96), Expect = 0.007
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
V++ TPGR+ D+ +RALH +++ V DEAD ML
Sbjct: 126 VLIATPGRLLDLYEQRALHFENLEILVFDEADRML 160
>UniRef50_Q8L4E9 Cluster: DEAD-box ATP-dependent RNA helicase 36;
n=7; Eukaryota|Rep: DEAD-box ATP-dependent RNA helicase
36 - Oryza sativa subsp. japonica (Rice)
Length = 501
Score = 66.1 bits (154), Expect = 6e-10
Identities = 34/71 (47%), Positives = 46/71 (64%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
L+GRDV+ A++G+GKTA F++ IL ++ AL LAPTRELA Q+ + ALG
Sbjct: 112 LEGRDVLGIAETGSGKTAAFALPILHRLGEDPYGVAALALAPTRELAAQLAEQFRALGAP 171
Query: 434 LNAKCHACIGG 466
L +C A IGG
Sbjct: 172 LGLRCLAAIGG 182
>UniRef50_UPI00015BD198 Cluster: UPI00015BD198 related cluster; n=1;
unknown|Rep: UPI00015BD198 UniRef100 entry - unknown
Length = 364
Score = 65.7 bits (153), Expect = 8e-10
Identities = 29/83 (34%), Positives = 54/83 (65%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
L+G D++ QA +GTGKT F+I I++++ + +AL+L PTRELA Q+++ + L +
Sbjct: 35 LEGYDILGQAATGTGKTGAFAIPIVEKLQKGKPDVKALVLTPTRELAIQVKEQIYMLTKY 94
Query: 434 LNAKCHACIGGTNVREDIRQLES 502
+ GGT+V++++ L++
Sbjct: 95 KRLSSYVFYGGTSVKQNLDILQN 117
Score = 44.4 bits (100), Expect = 0.002
Identities = 17/35 (48%), Positives = 28/35 (80%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+++GTPGR+ D+I R+AL+ + ++ VLDE D+ML
Sbjct: 122 ILIGTPGRIKDLIDRKALNLSKVEYLVLDEFDQML 156
>UniRef50_Q0RTL3 Cluster: Cold-shock DeaD box ATP-dependent RNA
helicase; n=2; Bacteria|Rep: Cold-shock DeaD box
ATP-dependent RNA helicase - Frankia alni (strain
ACN14a)
Length = 608
Score = 65.7 bits (153), Expect = 8e-10
Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIA 421
L+ GRD++ QA +GTGKTA F++ +L ++ T QAL+L PTRELA Q+ + +
Sbjct: 91 LVAGRDLLGQAATGTGKTAAFALPLLHRLTDDRTGDHGPQALVLVPTRELAVQVSEAIHR 150
Query: 422 LGDHLNAKCHACIGGTNVREDIRQLESGV 508
G L A+ GG + +R L GV
Sbjct: 151 YGRDLGARVLPVYGGAPIGRQVRALVQGV 179
Score = 37.9 bits (84), Expect = 0.19
Identities = 19/35 (54%), Positives = 22/35 (62%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
VVV TPGR D + R L + + VLDEADEML
Sbjct: 181 VVVATPGRALDHMGRGTLRLDGLHTVVLDEADEML 215
Score = 37.1 bits (82), Expect = 0.34
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +3
Query: 126 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIXP 251
D D + V F ++ L+ ELLR + A G+E+P+ IQ+ A+ P
Sbjct: 49 DIDPAEDVAGFAELALRPELLRSLAALGYEEPTPIQREAVPP 90
>UniRef50_O34750 Cluster: YfmL protein; n=5; Bacillus|Rep: YfmL
protein - Bacillus subtilis
Length = 376
Score = 65.3 bits (152), Expect = 1e-09
Identities = 30/83 (36%), Positives = 54/83 (65%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
++ G+DVIA++ +GTGKT +++ +L++I + QA+ILAP+REL QI +V+
Sbjct: 38 IMDGKDVIAESPTGTGKTLAYALPVLERIKPEQKHPQAVILAPSRELVMQIFQVIQDWKA 97
Query: 431 HLNAKCHACIGGTNVREDIRQLE 499
+ + IGG NV++ + +L+
Sbjct: 98 GSELRAASLIGGANVKKQVEKLK 120
Score = 41.9 bits (94), Expect = 0.012
Identities = 15/36 (41%), Positives = 27/36 (75%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+++VGTPGRV+++I + L + +K VLDE D+++
Sbjct: 124 HIIVGTPGRVFELIKAKKLKMHEVKTIVLDETDQLV 159
>UniRef50_A6DK15 Cluster: ATP-dependent RNA helicase, specific for
23S rRNA; n=1; Lentisphaera araneosa HTCC2155|Rep:
ATP-dependent RNA helicase, specific for 23S rRNA -
Lentisphaera araneosa HTCC2155
Length = 462
Score = 65.3 bits (152), Expect = 1e-09
Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 427
A+L G+D+IAQA++GTGKTA F + +L ++ Q LIL PTREL +Q+ K + L
Sbjct: 37 AILDGKDLIAQAKTGTGKTAAFGLGVLSKLVLDDYRIQVLILCPTRELCEQVSKAIRDLA 96
Query: 428 DHL-NAKCHACIGGTNVREDIRQLESG 505
+ N K + GG R ++ + G
Sbjct: 97 RMMPNIKLLSLGGGMPFRPQMKSVAHG 123
Score = 39.5 bits (88), Expect = 0.063
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++VVGTPGR+ + + +L + ++ VLDEAD ML
Sbjct: 125 HIVVGTPGRILKHLNKSSLSLDHVRTLVLDEADRML 160
>UniRef50_A3ZWP8 Cluster: ATP-dependent RNA helicase; n=1;
Blastopirellula marina DSM 3645|Rep: ATP-dependent RNA
helicase - Blastopirellula marina DSM 3645
Length = 428
Score = 65.3 bits (152), Expect = 1e-09
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQID--TSIRECQALILAPTRELAQQIQKVVIALG 427
L+GRDV+ QA++GTGKTA F I I+++++ + R QALIL PTRELA Q++ + L
Sbjct: 39 LEGRDVLGQARTGTGKTAAFGIPIIERLEHGPNSRNPQALILTPTRELAVQVRDEIAKLT 98
Query: 428 DHLNAKCHACIGGTNVREDIRQLE 499
A GG +R + +L+
Sbjct: 99 HGQRINVVAVYGGKPLRSQMEKLK 122
Score = 50.4 bits (115), Expect = 3e-05
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++VVGTPGRV D++TRRAL ++ VLDEAD ML
Sbjct: 126 HIVVGTPGRVIDLMTRRALQLEMLRTVVLDEADRML 161
>UniRef50_Q0W8H7 Cluster: ATP-dependent RNA helicase; n=1;
uncultured methanogenic archaeon RC-I|Rep: ATP-dependent
RNA helicase - Uncultured methanogenic archaeon RC-I
Length = 497
Score = 65.3 bits (152), Expect = 1e-09
Identities = 30/82 (36%), Positives = 51/82 (62%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
++G+D+I QA++GTGKTA F I +++ I + + Q L++ PTRELA Q+ + + +G
Sbjct: 37 MEGKDLIGQARTGTGKTAAFGIPMVEAIRPTSKGVQGLVVVPTRELAVQVAEELTRIGKV 96
Query: 434 LNAKCHACIGGTNVREDIRQLE 499
+ A GG + R ++ LE
Sbjct: 97 RGIRSVAIYGGQDFRSQVKALE 118
Score = 40.7 bits (91), Expect = 0.027
Identities = 17/36 (47%), Positives = 27/36 (75%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++VVGTPGR+ + + R + + I++ VLDEAD+ML
Sbjct: 122 HIVVGTPGRLLEHMRREYVRTSDIRIAVLDEADKML 157
>UniRef50_Q1VL45 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Psychroflexus torquis ATCC 700755|Rep: DEAD/DEAH box
helicase-like protein - Psychroflexus torquis ATCC
700755
Length = 255
Score = 64.9 bits (151), Expect = 1e-09
Identities = 35/84 (41%), Positives = 50/84 (59%)
Frame = +2
Query: 257 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 436
QG DVI QA++G+GKTA F + IL++ S + QAL+LAPTRELA Q+ + L +
Sbjct: 41 QGTDVIGQARTGSGKTAAFGLPILERCQPS-GKLQALVLAPTRELANQVAQEFELLQGNA 99
Query: 437 NAKCHACIGGTNVREDIRQLESGV 508
GGT++ + + L GV
Sbjct: 100 GLSIVTVYGGTDLEKQAKTLAKGV 123
Score = 41.9 bits (94), Expect = 0.012
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++VGTPGRV DM R + N+ K+ LDEAD ML
Sbjct: 125 IIVGTPGRVMDMNERGHIDLNSPKMLCLDEADRML 159
>UniRef50_Q1IMK6 Cluster: DEAD/DEAH box helicase-like; n=1;
Acidobacteria bacterium Ellin345|Rep: DEAD/DEAH box
helicase-like - Acidobacteria bacterium (strain
Ellin345)
Length = 423
Score = 64.9 bits (151), Expect = 1e-09
Identities = 37/85 (43%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQIQKVVIALGD 430
L GRD++A AQ+GTGKT F I L+ + DT Q LIL PTRELA Q+ V L
Sbjct: 62 LDGRDILATAQTGTGKTLAFIIPALEMLRDTEPCGVQVLILVPTRELAMQVHGVYEQLKG 121
Query: 431 HLNAKCHACIGGTNVREDIRQLESG 505
+GGT+ R I+ + SG
Sbjct: 122 KKLKSAALVMGGTSERNQIQSIRSG 146
Score = 39.5 bits (88), Expect = 0.063
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
VVV TPGR+ D + RR + + +++ VLDEAD M+
Sbjct: 149 VVVATPGRLEDYMGRRLVDLSQVEMLVLDEADRMM 183
>UniRef50_A4LYS0 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Desulfuromonadales|Rep: DEAD/DEAH box helicase
domain protein - Geobacter bemidjiensis Bem
Length = 482
Score = 64.9 bits (151), Expect = 1e-09
Identities = 42/89 (47%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISI----LQQIDT-SIRECQALILAPTRELAQQIQKVVI 418
L G+DV QAQ+GTGKTATF ISI L Q T +ALILAPTREL QI+K
Sbjct: 36 LTGKDVAGQAQTGTGKTATFLISIFTKLLSQAKTGGEHHPRALILAPTRELVVQIEKDAQ 95
Query: 419 ALGDHLNAKCHACIGGTNVREDIRQLESG 505
ALG + A GG + + L++G
Sbjct: 96 ALGKYTGFNIQAIYGGVDYMKQRDALKAG 124
Score = 36.3 bits (80), Expect = 0.59
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 612
+V+GTPGR+ D + ++ ++ V+DEAD M
Sbjct: 127 IVIGTPGRLIDYLKQKVYSVKDVEALVIDEADRM 160
>UniRef50_A0RP33 Cluster: Putative ATP-dependent RNA helicase RhlE;
n=1; Campylobacter fetus subsp. fetus 82-40|Rep:
Putative ATP-dependent RNA helicase RhlE - Campylobacter
fetus subsp. fetus (strain 82-40)
Length = 624
Score = 64.9 bits (151), Expect = 1e-09
Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 5/92 (5%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIR-----ECQALILAPTRELAQQIQKV 412
A++QG+D++A A++GTGKTA F++ IL+++ + R + + L+L PTRELA Q+ +
Sbjct: 34 AIMQGKDILAGARTGTGKTAAFALPILEKLSSKERNKKRPQTRVLVLVPTRELANQVTQN 93
Query: 413 VIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
+ + L K GG + I+ L+SG+
Sbjct: 94 IKSYAKKLPFKTLPVFGGVSSYPQIQALKSGI 125
Score = 35.1 bits (77), Expect = 1.4
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 612
+VV TPGR+ D+ + AL I V DEAD M
Sbjct: 127 IVVATPGRLLDLALQNALSLEHIDTLVFDEADRM 160
>UniRef50_Q4N4B1 Cluster: ATP-dependent RNA helicase, putative; n=4;
Eukaryota|Rep: ATP-dependent RNA helicase, putative -
Theileria parva
Length = 470
Score = 64.9 bits (151), Expect = 1e-09
Identities = 33/81 (40%), Positives = 52/81 (64%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
L G+D+I A++G+GKTA F+I ILQ++ + +LILAPTREL+ QI++ +I+LG
Sbjct: 76 LSGKDIIGLAETGSGKTAAFTIPILQKLLEKPQRLFSLILAPTRELSLQIKEQLISLGSE 135
Query: 434 LNAKCHACIGGTNVREDIRQL 496
+ +GG ++ QL
Sbjct: 136 IGLDVCLILGGLDMVSQALQL 156
Score = 38.3 bits (85), Expect = 0.15
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLS 618
+++VG+PGR+ D + + TIK VLDEAD++LS
Sbjct: 161 HIIVGSPGRIADHLQNTKGFSLETIKYLVLDEADKLLS 198
>UniRef50_Q2NEZ7 Cluster: Predicted helicase; n=6; cellular
organisms|Rep: Predicted helicase - Methanosphaera
stadtmanae (strain DSM 3091)
Length = 583
Score = 64.9 bits (151), Expect = 1e-09
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+L +DV QAQ+GTGKTA F I +L+ ID+ QA+IL PTRELA Q+ + + L
Sbjct: 38 ILAHKDVTGQAQTGTGKTAAFGIPLLENIDSEDNNLQAIILCPTRELAIQVAEELRKLSV 97
Query: 431 HL-NAKCHACIGGTNVREDIRQLESGV 508
+L GG + I+ L+ GV
Sbjct: 98 YLPKIDVLPVYGGQPIDRQIKALQKGV 124
Score = 47.6 bits (108), Expect = 2e-04
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+++GTPGRV D I R L N IK +LDEADEML
Sbjct: 126 IIIGTPGRVMDHIDRGTLSLNNIKTVILDEADEML 160
>UniRef50_Q9P9G7 Cluster: DEAD-box RNA helicase; n=3;
Methanosarcinaceae|Rep: DEAD-box RNA helicase -
Methanococcoides burtonii
Length = 522
Score = 64.9 bits (151), Expect = 1e-09
Identities = 32/83 (38%), Positives = 48/83 (57%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+L+G+D+I A +G+GKT F I+Q+I+ +AL+L PTRELA+Q+Q +
Sbjct: 36 ILEGKDIIGGAATGSGKTLAFGCGIIQKIEKG-NGIRALVLTPTRELAEQVQNSLKEFSR 94
Query: 431 HLNAKCHACIGGTNVREDIRQLE 499
H + GG + IRQLE
Sbjct: 95 HKQLRVAPIYGGVAINPQIRQLE 117
Score = 39.5 bits (88), Expect = 0.063
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
VVV TPGR+ D I R + +++ VLDEAD ML
Sbjct: 121 VVVATPGRLLDHIERGTIDLGDVEILVLDEADRML 155
>UniRef50_Q5KBP5 Cluster: ATP-dependent RNA helicase DBP5; n=3;
Filobasidiella neoformans|Rep: ATP-dependent RNA
helicase DBP5 - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 546
Score = 64.9 bits (151), Expect = 1e-09
Identities = 30/69 (43%), Positives = 48/69 (69%)
Frame = +2
Query: 263 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 442
R++I Q+QSGTGKTA F++++L ++D +I QA+ +AP+RELA+QIQ+V+ +G
Sbjct: 188 RNLIGQSQSGTGKTAAFTLNMLSRVDPTIPTPQAICIAPSRELARQIQEVIDQIGQFTQV 247
Query: 443 KCHACIGGT 469
I G+
Sbjct: 248 GTFLAIPGS 256
Score = 44.0 bits (99), Expect = 0.003
Identities = 17/33 (51%), Positives = 28/33 (84%)
Frame = +3
Query: 147 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
V++F ++NL E+L++GI A GF+KPS IQ++A+
Sbjct: 147 VQSFKELNLHEDLMKGIIAAGFQKPSKIQEKAL 179
Score = 38.7 bits (86), Expect = 0.11
Identities = 17/39 (43%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Frame = +1
Query: 511 VVVGTPGRVYDMITR--RALHANTIKLFVLDEADEMLSR 621
+++GTPG + DM+ R R L I++ VLDEADE++++
Sbjct: 267 ILIGTPGTLVDMLMRGSRILDPRMIRVLVLDEADELIAQ 305
>UniRef50_UPI0000DB7226 Cluster: PREDICTED: similar to Probable
ATP-dependent RNA helicase DDX20 (DEAD box protein 20)
(DEAD box protein DP 103) (Component of gems 3)
(Gemin-3); n=1; Apis mellifera|Rep: PREDICTED: similar
to Probable ATP-dependent RNA helicase DDX20 (DEAD box
protein 20) (DEAD box protein DP 103) (Component of gems
3) (Gemin-3) - Apis mellifera
Length = 648
Score = 64.5 bits (150), Expect = 2e-09
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = +2
Query: 260 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 436
G D+I +A+SGTGKT F I L+ ID I Q LILAPTRE+A QI +V ++G +
Sbjct: 33 GFDLIMRAKSGTGKTLVFCIISLEMIDIDISSVQVLILAPTREIAVQIAQVFSSVGCEIK 92
Query: 437 NAKCHACIGGTNVREDIRQLES 502
+ K IGG + D +++ +
Sbjct: 93 DLKVEVFIGGLAIENDKKKVNN 114
Score = 41.9 bits (94), Expect = 0.012
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +1
Query: 505 CYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
C + VG PGR+ +I + L ++LFVLDEAD+++
Sbjct: 115 CQIAVGAPGRIRHLIDKGFLKVENVRLFVLDEADKLM 151
>UniRef50_Q6YPL1 Cluster: Superfamily II DNA and RNA helicase; n=3;
Candidatus Phytoplasma|Rep: Superfamily II DNA and RNA
helicase - Onion yellows phytoplasma
Length = 552
Score = 64.5 bits (150), Expect = 2e-09
Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI-QKVVIALG 427
+++G DVI QAQ+GTGKT F I I+++I+ I++ Q+LIL PTREL Q+ +++ L
Sbjct: 37 IIKGHDVIGQAQTGTGKTFAFGIPIIEKIEPKIQKTQSLILCPTRELTLQVYEELKKLLR 96
Query: 428 DHLNAKCHACIGGTNVREDIRQLES 502
+ + GG + + R LE+
Sbjct: 97 FYQEIRIAVVYGGESYTKQFRALEA 121
Score = 39.1 bits (87), Expect = 0.084
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++++ TPGR D + R + + +K+ LDEADEML
Sbjct: 124 HLIIATPGRAIDHLERGKIDLSALKILTLDEADEML 159
>UniRef50_Q62IF8 Cluster: ATP-dependent RNA helicase RhlE; n=59;
Betaproteobacteria|Rep: ATP-dependent RNA helicase RhlE
- Burkholderia mallei (Pseudomonas mallei)
Length = 482
Score = 64.5 bits (150), Expect = 2e-09
Identities = 39/94 (41%), Positives = 53/94 (56%), Gaps = 8/94 (8%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQ----QIDTSI----RECQALILAPTRELAQQIQ 406
+L GRDV+ AQ+GTGKTA+FS+ I+Q Q +TS +ALIL PTRELA Q+
Sbjct: 45 VLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSASPARHPVRALILTPTRELADQVA 104
Query: 407 KVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
V A H + GG ++ + +L GV
Sbjct: 105 ANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGV 138
Score = 36.7 bits (81), Expect = 0.45
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+++ TPGR+ D + ++ + +++ VLDEAD ML
Sbjct: 140 ILIATPGRLLDHVQQKTANLGQVQILVLDEADRML 174
>UniRef50_Q5NZY2 Cluster: ATP-dependent RNA helicase DeaD; n=18;
Bacteria|Rep: ATP-dependent RNA helicase DeaD - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 658
Score = 64.5 bits (150), Expect = 2e-09
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
LL G D++ +AQ+GTGKTA F++ +L ++D +++ Q L+LAPTRELA Q+ +
Sbjct: 78 LLAGHDLLGEAQTGTGKTAAFALPLLDRLDLAVKNPQVLVLAPTRELAIQVAEAFQRYAK 137
Query: 431 HL-NAKCHACIGGTNVREDIRQLESG 505
+L GG ++ +RQL G
Sbjct: 138 NLPGFHVLPVYGGQSMVVQLRQLARG 163
Score = 48.0 bits (109), Expect = 2e-04
Identities = 21/36 (58%), Positives = 29/36 (80%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+V+VGTPGRV D I R++L+ +++ VLDEADEML
Sbjct: 165 HVIVGTPGRVMDHIERKSLNLDSLTTLVLDEADEML 200
>UniRef50_Q5FNK0 Cluster: ATP-dependent RNA helicase; n=1;
Gluconobacter oxydans|Rep: ATP-dependent RNA helicase -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 393
Score = 64.5 bits (150), Expect = 2e-09
Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTS--IRECQALILAPTRELAQQIQKVVIAL 424
LL+G+DV+ +Q+G+GKTA F + +LQ++ + +ALIL PTRELA Q V L
Sbjct: 54 LLEGKDVLVGSQTGSGKTAAFVLPMLQKLTEAGPAPGPRALILEPTRELAAQTAAVCRQL 113
Query: 425 GDHLNAKCHACIGGTNVREDIRQLESGV 508
G L+ K GGT+ + ++ + GV
Sbjct: 114 GRRLSLKTRVICGGTSREQQVQSVSDGV 141
>UniRef50_Q12QV2 Cluster: DEAD/DEAH box helicase-like protein; n=16;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Shewanella denitrificans (strain OS217 / ATCC
BAA-1090 / DSM 15013)
Length = 433
Score = 64.5 bits (150), Expect = 2e-09
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQ-----IDTSIRECQALILAPTRELAQQIQKV 412
A+ +G DV+A AQ+GTGKTA F++ ILQ+ + +ALIL PTRELA Q+
Sbjct: 34 AIRRGEDVLASAQTGTGKTAAFALPILQKMHERPMTVQHSNARALILTPTRELAAQVADN 93
Query: 413 VIALGDHLNAKCHACIGGTNVREDIRQLESG 505
+ A H+N GG + ++L+ G
Sbjct: 94 ISAYSKHMNISVLTIYGGMKMATQAQKLKQG 124
Score = 34.7 bits (76), Expect = 1.8
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++V TPGR+ + I L + ++ VLDEAD ML
Sbjct: 127 IIVATPGRLLEHIVACNLSLSNVEFLVLDEADRML 161
>UniRef50_Q08Q14 Cluster: HeliCase, c-terminal:dead/deah box
helicase, n-terminal; n=3; Bacteria|Rep: HeliCase,
c-terminal:dead/deah box helicase, n-terminal -
Stigmatella aurantiaca DW4/3-1
Length = 608
Score = 64.5 bits (150), Expect = 2e-09
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIR---ECQALILAPTRELAQQIQKVVIA 421
LL+G+D++ A +GTGKTA FS+ +LQ+I AL+L PTRELA Q+ + +
Sbjct: 70 LLEGKDLLGIAATGTGKTAAFSLPLLQRITPGAHAPFTASALVLVPTRELAMQVAEAIHR 129
Query: 422 LGDHLNAKCHACIGGTNVREDIRQLESGV 508
G L GG + + +R L+ GV
Sbjct: 130 YGQKLGISVVPLYGGQVISQQLRVLKRGV 158
Score = 42.3 bits (95), Expect = 0.009
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
VVV TPGR D + R+ L +++ VLDEADEML
Sbjct: 160 VVVATPGRALDHLQRKTLKLEQVRVVVLDEADEML 194
Score = 32.3 bits (70), Expect = 9.6
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +3
Query: 84 GSYDGPPG-MDPGTLDT---DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIXP 251
G D PPG +D T + + TF+ + L L+ + A G+E+P+ IQ+ A+ P
Sbjct: 10 GRCDFPPGGIDGATSPSTVKETSAADNTFESLGLLPPLVEALSALGYEEPTPIQRAALPP 69
>UniRef50_A0RUV7 Cluster: Superfamily II helicase; n=3;
Thermoprotei|Rep: Superfamily II helicase - Cenarchaeum
symbiosum
Length = 434
Score = 64.5 bits (150), Expect = 2e-09
Identities = 37/85 (43%), Positives = 50/85 (58%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
LL GRDV+ QA +GTGKT +SIS+LQ+I Q LI+APTRELA QI + V
Sbjct: 36 LLTGRDVVGQAHTGTGKTGAYSISMLQEIKEG-GGIQGLIVAPTRELAVQITEEVKKFAK 94
Query: 431 HLNAKCHACIGGTNVREDIRQLESG 505
+ + A GG ++ + L+ G
Sbjct: 95 YTKVRPVAIYGGQSMGVQLDALKRG 119
Score = 35.5 bits (78), Expect = 1.0
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++V TPGR+ D I R ++ + + VLDEAD ML
Sbjct: 122 ILVATPGRLIDHIKRGSISIDRVTHLVLDEADTML 156
>UniRef50_Q5NML9 Cluster: DNA and RNA helicase; n=28;
Alphaproteobacteria|Rep: DNA and RNA helicase -
Zymomonas mobilis
Length = 458
Score = 64.1 bits (149), Expect = 3e-09
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSI-----RECQALILAPTRELAQQIQKVV 415
LL+G+D+ AQ+GTGKTA F++ + + T+ R C+ LIL+PTRELA QI +
Sbjct: 40 LLEGKDLCGIAQTGTGKTAAFALPSIHYLATNPQARPQRGCRMLILSPTRELASQIARAC 99
Query: 416 IALGDHLNAKCHACIGGTNVREDIRQLESG 505
HL +A GG + +R L+ G
Sbjct: 100 NDYTRHLRMSVNAVFGGVPIGRQMRMLDRG 129
Score = 45.2 bits (102), Expect = 0.001
Identities = 19/35 (54%), Positives = 28/35 (80%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++V TPGR+ D+I +RAL +++FVLDEAD+ML
Sbjct: 132 ILVATPGRLLDLIDQRALVLKDVEVFVLDEADQML 166
>UniRef50_Q480Z7 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=2; Alteromonadales|Rep: ATP-dependent RNA
helicase, DEAD box family - Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) (Vibriopsychroerythus)
Length = 399
Score = 64.1 bits (149), Expect = 3e-09
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQ-----IDTSIRECQALILAPTRELAQQIQKV 412
AL+ G D++ AQ+GTGKTA FS+ I+ + ID + ++LIL PTRELA QI +
Sbjct: 35 ALINGNDLLGIAQTGTGKTAAFSLPIINKFGRNKIDIKAKSTRSLILTPTRELASQIMQN 94
Query: 413 VIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
+ D L K GG + + +E G+
Sbjct: 95 IDDYSDGLGLKTKVVYGGVGRQAQVDSIELGL 126
Score = 38.3 bits (85), Expect = 0.15
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++V TPGR+ D+I ++ +++FVLDEAD ML
Sbjct: 128 ILVATPGRLLDLIETGDINFKALEVFVLDEADTML 162
>UniRef50_A6CFZ8 Cluster: ATP-dependent RNA helicase; n=1;
Planctomyces maris DSM 8797|Rep: ATP-dependent RNA
helicase - Planctomyces maris DSM 8797
Length = 445
Score = 64.1 bits (149), Expect = 3e-09
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC-----QALILAPTRELAQQIQKV 412
A L+GRDV+ AQ+GTGKTA ++ IL Q+ + R+ AL+LAPTRELA QI
Sbjct: 35 AALEGRDVLGCAQTGTGKTAALALPILNQLGKNSRKSIPHHPLALVLAPTRELAIQIGDS 94
Query: 413 VIALGDHLNAKCHACIGGTNVREDIRQLESG 505
A G HL + GG ++ L+ G
Sbjct: 95 FDAYGRHLKLRSVLIYGGVGQGNQVKALKRG 125
Score = 41.1 bits (92), Expect = 0.021
Identities = 16/36 (44%), Positives = 27/36 (75%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+++V TPGR+ D++ + + N +++FVLDEAD ML
Sbjct: 127 HILVATPGRLLDLMNQGHIKLNQLEVFVLDEADRML 162
>UniRef50_A3ZXX1 Cluster: ATP-dependent RNA helicase; n=2;
Planctomycetaceae|Rep: ATP-dependent RNA helicase -
Blastopirellula marina DSM 3645
Length = 447
Score = 64.1 bits (149), Expect = 3e-09
Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQID---TSIREC--QALILAPTRELAQQIQKVV 415
LL+G D+I AQ+GTGKTA F++ IL Q+D + C Q L+L+PTRELA QI +
Sbjct: 30 LLEGSDLIGCAQTGTGKTAAFALPILNQLDLDRSRADACAPQVLVLSPTRELAVQIAQSF 89
Query: 416 IALGDHLNAKCHACIGGTNVREDIRQLESGV 508
G ++ + GG +R L+ GV
Sbjct: 90 NVYGRNVKFRLTTIFGGVGQNPQVRALKRGV 120
Score = 37.5 bits (83), Expect = 0.26
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+V + TPGR+ D++ + + + K FVLDEAD ML
Sbjct: 121 HVAIATPGRLLDLMDQGYVDLSQAKTFVLDEADRML 156
>UniRef50_A1U3D6 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Marinobacter aquaeolei VT8|Rep: DEAD/DEAH box
helicase domain protein - Marinobacter aquaeolei (strain
ATCC 700491 / DSM 11845 / VT8)(Marinobacter
hydrocarbonoclasticus (strain DSM 11845))
Length = 528
Score = 64.1 bits (149), Expect = 3e-09
Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 427
ALL G ++ AQ+GTGKTA F++ +L +ID ++ E Q L+LAPTRELA Q+ +
Sbjct: 57 ALLAGNHLLGVAQTGTGKTAAFALPLLSRIDANVAEPQILVLAPTRELAIQVAEAFTTYA 116
Query: 428 DHL-NAKCHACIGGTNVREDIRQLESG 505
N GG + IR L+ G
Sbjct: 117 SKFRNFHVLPIYGGQDFSPQIRGLKRG 143
Score = 42.3 bits (95), Expect = 0.009
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
V+VGTPGR+ D + + L + +K VLDEADEML
Sbjct: 146 VIVGTPGRMLDHLRKGTLKLDGLKALVLDEADEML 180
>UniRef50_Q9V3C4 Cluster: CG6539-PA; n=1; Drosophila
melanogaster|Rep: CG6539-PA - Drosophila melanogaster
(Fruit fly)
Length = 1028
Score = 64.1 bits (149), Expect = 3e-09
Identities = 35/84 (41%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Frame = +2
Query: 266 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAL-GDHLNA 442
D+I Q++SGTGKT + I+++Q + +I + A+I+ PTRELA Q+Q L +
Sbjct: 64 DLIIQSKSGTGKTLIYVIAVVQSFNPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDF 123
Query: 443 KCHACIGGTNVREDIRQL-ESGVM 511
KC A IGGT+V +D +++ ES V+
Sbjct: 124 KCSAFIGGTDVAKDRKRMNESRVI 147
Score = 37.5 bits (83), Expect = 0.26
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 612
V++GTPGR+ + R + ++L VLDEAD++
Sbjct: 146 VIIGTPGRLLHLYENRVFDVSKLRLLVLDEADQL 179
>UniRef50_Q5BXU1 Cluster: SJCHGC08663 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC08663 protein - Schistosoma
japonicum (Blood fluke)
Length = 193
Score = 64.1 bits (149), Expect = 3e-09
Identities = 29/50 (58%), Positives = 40/50 (80%)
Frame = +2
Query: 263 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 412
+++IAQ+QSGTGKTATF +++L +I T + CQ L +APTRELA QI+ V
Sbjct: 116 QNMIAQSQSGTGKTATFLLAMLSRIRTDVHYCQCLCMAPTRELALQIESV 165
Score = 47.6 bits (108), Expect = 2e-04
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +3
Query: 147 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIXPCSKD 263
V TF ++NLKE LL+GI A GF KPS IQ+RA+ D
Sbjct: 75 VRTFQELNLKEPLLKGIAAMGFYKPSTIQERALSSLISD 113
>UniRef50_Q22308 Cluster: Putative uncharacterized protein; n=7;
Bilateria|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 1022
Score = 64.1 bits (149), Expect = 3e-09
Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Frame = +2
Query: 266 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 442
++IAQAQSGTGKTA F +++L +ID ++ Q + LAPT ELA+QI +VV +G + N
Sbjct: 659 NLIAQAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFIDNL 718
Query: 443 KCHACIGGTNV 475
K H I G N+
Sbjct: 719 KIHYAIKGGNM 729
>UniRef50_Q9HXE5 Cluster: ATP-dependent RNA helicase rhlB; n=22;
Gammaproteobacteria|Rep: ATP-dependent RNA helicase rhlB
- Pseudomonas aeruginosa
Length = 397
Score = 64.1 bits (149), Expect = 3e-09
Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 7/90 (7%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALILAPTRELAQQIQKV 412
L+G+D I +AQ+GTGKTA F ISI+ Q+ + + E +ALI+APTREL QI K
Sbjct: 44 LRGQDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKD 103
Query: 413 VIALGDHLNAKCHACIGGTNVREDIRQLES 502
AL + +GG + + ++QLE+
Sbjct: 104 AAALTKYTGLNVMTFVGGMDFDKQLKQLEA 133
Score = 41.5 bits (93), Expect = 0.016
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +1
Query: 502 WCYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+C ++V TPGR+ D R +H + +++ VLDEAD ML
Sbjct: 135 FCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRML 172
>UniRef50_UPI00006CBDDC Cluster: DEAD/DEAH box helicase family
protein; n=1; Tetrahymena thermophila SB210|Rep:
DEAD/DEAH box helicase family protein - Tetrahymena
thermophila SB210
Length = 598
Score = 63.7 bits (148), Expect = 3e-09
Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 8/91 (8%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISI----LQQIDTSIREC-QALILAPTRELAQQIQKVVI 418
++ D+ +AQ+G+GKT F + I ++Q+ T+ + C AL++APTRELA+QI ++ +
Sbjct: 44 IKNHDLAVEAQTGSGKTLAFLLPIFNVLIKQVKTANKNCVYALVIAPTRELAKQIHEIAV 103
Query: 419 ALGDHL---NAKCHACIGGTNVREDIRQLES 502
L HL CIGG + + D+ ++S
Sbjct: 104 QLASHLENNQFSIQLCIGGVSTKIDVSNIQS 134
>UniRef50_Q89IS2 Cluster: Cold-shock dead-box protein A; n=28;
Alphaproteobacteria|Rep: Cold-shock dead-box protein A -
Bradyrhizobium japonicum
Length = 650
Score = 63.7 bits (148), Expect = 3e-09
Identities = 31/88 (35%), Positives = 55/88 (62%), Gaps = 6/88 (6%)
Frame = +2
Query: 260 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKVVIA 421
GRD++ AQ+G+GKT + +++ + + I + ALI+APTRELA Q+Q+ +
Sbjct: 36 GRDLLVSAQTGSGKTLAYGLALAKDLLDGIERFERAGAPLALIVAPTRELALQVQRELAW 95
Query: 422 LGDHLNAKCHACIGGTNVREDIRQLESG 505
L +H + + +C+GG + R + R+L +G
Sbjct: 96 LYEHADGRVVSCVGGMDPRREQRELAAG 123
Score = 44.0 bits (99), Expect = 0.003
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
++VVGTPGR+ D + R L + +K VLDEADEML+
Sbjct: 125 HIVVGTPGRLCDHLRRGRLDISELKAVVLDEADEMLN 161
>UniRef50_Q81RE0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=9; Bacillus cereus group|Rep: ATP-dependent
RNA helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 389
Score = 63.7 bits (148), Expect = 3e-09
Identities = 28/83 (33%), Positives = 52/83 (62%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+L+G+DVIA++ +GTGKT + + +L +I+ +++ Q ++LAPTREL QI + V
Sbjct: 32 ILEGQDVIAESPTGTGKTLAYLLPLLHKINPEVKQPQVVVLAPTRELVMQIHEEVQKFTA 91
Query: 431 HLNAKCHACIGGTNVREDIRQLE 499
+ IGG +++ + +L+
Sbjct: 92 GTEISGASLIGGADIKRQVEKLK 114
Score = 35.5 bits (78), Expect = 1.0
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
V+VG+PGR+ ++I + L + +K V DE D+++ +
Sbjct: 119 VIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQ 155
>UniRef50_A7CUH7 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Opitutaceae bacterium TAV2|Rep: DEAD/DEAH box
helicase domain protein - Opitutaceae bacterium TAV2
Length = 536
Score = 63.7 bits (148), Expect = 3e-09
Identities = 32/87 (36%), Positives = 47/87 (54%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 427
A+L GRDV AQ+GTGKTA F++ IL ++ R + L+L PTRELA Q+++
Sbjct: 166 AVLAGRDVTGSAQTGTGKTAAFALPILHKLGAHERRLRCLVLEPTRELALQVEEAFQKYS 225
Query: 428 DHLNAKCHACIGGTNVREDIRQLESGV 508
+ + GG + L+ GV
Sbjct: 226 KYTDLTATVVYGGVGYGKQREDLQRGV 252
Score = 33.5 bits (73), Expect = 4.2
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
VV TPGR+ D I + + +++ VLDE D ML
Sbjct: 254 VVAATPGRLLDHIEQGTMTLADVEILVLDEVDRML 288
>UniRef50_A6T3R2 Cluster: ATP-dependent RNA helicase; n=52; cellular
organisms|Rep: ATP-dependent RNA helicase -
Janthinobacterium sp. (strain Marseille) (Minibacterium
massiliensis)
Length = 778
Score = 63.7 bits (148), Expect = 3e-09
Identities = 31/51 (60%), Positives = 39/51 (76%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 403
LL RDV+ QAQ+GTGKTA+F++ IL +ID QAL+LAPTRELA Q+
Sbjct: 41 LLNNRDVLGQAQTGTGKTASFALPILARIDIKQTTPQALVLAPTRELAIQV 91
Score = 46.4 bits (105), Expect = 6e-04
Identities = 22/36 (61%), Positives = 27/36 (75%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+VVVGTPGRV D + + +L + IK VLDEADEML
Sbjct: 128 HVVVGTPGRVIDHLEKGSLDLSRIKTMVLDEADEML 163
>UniRef50_Q6MQY6 Cluster: ATP-dependent RNA helicase; n=1;
Bdellovibrio bacteriovorus|Rep: ATP-dependent RNA
helicase - Bdellovibrio bacteriovorus
Length = 473
Score = 63.3 bits (147), Expect = 4e-09
Identities = 35/84 (41%), Positives = 49/84 (58%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 427
A L G D+IA AQ+G+GKT F++S+L + E + LIL P+RE+AQQI KV + L
Sbjct: 66 ASLDGSDIIAIAQTGSGKTLAFALSLLTTLQKK-PEARGLILVPSREMAQQIYKVFLELC 124
Query: 428 DHLNAKCHACIGGTNVREDIRQLE 499
+ IGGT + QL+
Sbjct: 125 AEMPVSVCLAIGGTTGSKQANQLK 148
Score = 34.7 bits (76), Expect = 1.8
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+++ TPGR+ D ++ L +++ VLDEAD ML
Sbjct: 153 LIIATPGRMNDHLSGNKLLLQNVEVIVLDEADRML 187
>UniRef50_Q0TQ86 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=3; Clostridium perfringens|Rep: ATP-dependent
RNA helicase, DEAD/DEAH box family - Clostridium
perfringens (strain ATCC 13124 / NCTC 8237 / Type A)
Length = 405
Score = 63.3 bits (147), Expect = 4e-09
Identities = 32/86 (37%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+L+G++VI +A++GTGKT + + I+++ID S E QA+IL+PT EL QI V+ L
Sbjct: 36 ILKGKNVIGKAETGTGKTLAYLLPIIEKIDDSKNEMQAIILSPTHELGVQINNVLNDLKR 95
Query: 431 HLNAKCHA--CIGGTNVREDIRQLES 502
L K + +G N++ + +L++
Sbjct: 96 GLGKKITSTTLVGSGNIKRQMEKLKN 121
Score = 41.5 bits (93), Expect = 0.016
Identities = 15/36 (41%), Positives = 27/36 (75%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+++VGT GR+ ++I ++ + NTIK V+DE D++L
Sbjct: 124 HILVGTTGRILELINKKKITTNTIKTIVIDEGDKLL 159
>UniRef50_Q03YT1 Cluster: Superfamily II DNA and RNA helicase; n=1;
Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293|Rep: Superfamily II DNA and RNA helicase -
Leuconostoc mesenteroides subsp. mesenteroides (strain
ATCC 8293 /NCDO 523)
Length = 431
Score = 63.3 bits (147), Expect = 4e-09
Identities = 31/83 (37%), Positives = 48/83 (57%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
L G + A +GTGKT F + +L +IDT+++ Q LILAP++ELA Q +V G+
Sbjct: 27 LTDGDSIFGLAPTGTGKTLAFVLPVLSRIDTNLKRTQVLILAPSQELAMQTTQVAREWGN 86
Query: 431 HLNAKCHACIGGTNVREDIRQLE 499
+ A + IGG N R +++
Sbjct: 87 AVGASVASLIGGANGRRQADKIK 109
Score = 33.1 bits (72), Expect = 5.5
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
++VVGT GRV M+ L + I + DEAD ML+
Sbjct: 114 HIVVGTLGRVLTMVDGGVLKLDHIATVIFDEADAMLT 150
>UniRef50_A6QHA1 Cluster: ATP-dependent RNA helicase DEAD/DEAH box
family protein; n=16; Staphylococcus|Rep: ATP-dependent
RNA helicase DEAD/DEAH box family protein -
Staphylococcus aureus (strain Newman)
Length = 448
Score = 63.3 bits (147), Expect = 4e-09
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+L+ ++I Q+Q+GTGK+ F + ++Q ID+ I+E QA+++APTRELAQQ+ L
Sbjct: 38 ILKRTNLIGQSQTGTGKSHAFLLPLMQLIDSEIKEPQAIVVAPTRELAQQLYDAANHLSQ 97
Query: 431 -HLNAKCHACIGGTNVRED 484
IGGT++ +D
Sbjct: 98 FKAGVSVKVFIGGTDIEKD 116
Score = 32.7 bits (71), Expect = 7.3
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+++GTP R+ D+ LH + V+DEAD M+
Sbjct: 126 LIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMI 160
>UniRef50_A5CVQ6 Cluster: ATP-dependent RNA helicase DeaD; n=2;
sulfur-oxidizing symbionts|Rep: ATP-dependent RNA
helicase DeaD - Vesicomyosocius okutanii subsp.
Calyptogena okutanii (strain HA)
Length = 608
Score = 63.3 bits (147), Expect = 4e-09
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
LL +D+I QAQ+GTGKTA F + +L +I+ +I Q LILAPTRELA Q+ + V
Sbjct: 46 LLNNKDIIGQAQTGTGKTAAFVLPLLDKINLNINAPQLLILAPTRELAIQVSEAVQTYAR 105
Query: 431 HLNA-KCHACIGGTNVREDIRQLESGV 508
+ GG + +R L+ GV
Sbjct: 106 GMKGFHVLPIYGGQSYDIQLRPLKRGV 132
Score = 48.4 bits (110), Expect = 1e-04
Identities = 22/42 (52%), Positives = 28/42 (66%)
Frame = +1
Query: 490 PTGEWCYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
P + +VGTPGRV D I ++ L + +K FVLDEADEML
Sbjct: 127 PLKRGVHAIVGTPGRVMDHIEKKTLKLDNLKSFVLDEADEML 168
>UniRef50_A4B5L7 Cluster: ATP-dependent RNA helicase DbpA; n=3;
Proteobacteria|Rep: ATP-dependent RNA helicase DbpA -
Alteromonas macleodii 'Deep ecotype'
Length = 459
Score = 63.3 bits (147), Expect = 4e-09
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI-QKVVIALGD 430
LQG+DVI QAQ+G+GKT F I L++I+ + QA++L PTRELA+Q+ Q+ A D
Sbjct: 39 LQGKDVIGQAQTGSGKTLCFVIPALEKIEVNDFSTQAIMLCPTRELAEQVAQQCRSAAKD 98
Query: 431 HLNAKCHACIGGTNVREDIRQLE 499
N K GG + I+ L+
Sbjct: 99 IGNIKVTTLCGGQPMGPQIQSLK 121
Score = 45.6 bits (103), Expect = 0.001
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+++VGTPGRV D + +R + +KL VLDEAD ML
Sbjct: 125 HIIVGTPGRVMDHVEKRRIDLRNVKLRVLDEADRML 160
>UniRef50_A0VLH7 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Rhodobacteraceae|Rep: DEAD/DEAH box helicase domain
protein - Dinoroseobacter shibae DFL 12
Length = 508
Score = 63.3 bits (147), Expect = 4e-09
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVI 418
L GRDV+ AQ+GTGKTA F + +L + + R C+ LILAPTREL QI + +
Sbjct: 106 LNGRDVLGIAQTGTGKTAAFGLPLLDALMKAGTKPAPRTCRGLILAPTRELVSQICESLR 165
Query: 419 ALGDHLNAKCHACIGGTNVREDIRQLESG 505
A + + K +GG + I++ E G
Sbjct: 166 AFTEGSHLKLQVIVGGVAIGPQIKRAERG 194
Score = 42.3 bits (95), Expect = 0.009
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++V TPGR+ D++ R+AL + + VLDEAD+ML
Sbjct: 197 LIVATPGRLIDLLDRKALRLSETRFLVLDEADQML 231
>UniRef50_A0KZD5 Cluster: DEAD/DEAH box helicase domain protein;
n=19; Alteromonadales|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain ANA-3)
Length = 487
Score = 63.3 bits (147), Expect = 4e-09
Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE---CQALILAPTRELAQQIQKVVIAL 424
L+G+D++A AQ+GTGKTA+F++ +L+Q+ + +AL++ PTRELA Q+ +
Sbjct: 57 LEGKDIMACAQTGTGKTASFALPVLEQLSKQPNDKPLLRALVMTPTRELAIQVCANIQKY 116
Query: 425 GDHLNAKCHACIGGTNVREDIRQLESGV 508
L K A GG N+ + +E GV
Sbjct: 117 SQFLPLKTLAVYGGANMNPQRKGVEQGV 144
Score = 36.7 bits (81), Expect = 0.45
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++V TPGR++D+I + L +++ V+DEAD ML
Sbjct: 146 ILVATPGRLFDIIGQFHLDLSSVTTLVIDEADRML 180
>UniRef50_Q7QQX6 Cluster: GLP_383_7421_6129; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_383_7421_6129 - Giardia lamblia ATCC
50803
Length = 430
Score = 63.3 bits (147), Expect = 4e-09
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+L RDV+A+A++GTGKT +F I ILQ ++ + QAL+L TRELA Q KV L
Sbjct: 55 ILARRDVVARAKNGTGKTGSFLIPILQMVNPAKDHIQALVLLHTRELAMQTAKVAKTLSK 114
Query: 431 HL---NAKCHACIGGTNVRED 484
++ + IGG ++ ED
Sbjct: 115 NMPDVTGRIMCAIGGVSIAED 135
Score = 34.7 bits (76), Expect = 1.8
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
VV+ TPGR+ +I L+ + VLDEAD +LS+
Sbjct: 145 VVLATPGRLQQLIDEEILNFRDCSIVVLDEADMLLSQ 181
>UniRef50_Q11039 Cluster: Cold-shock DEAD box protein A homolog;
n=31; Bacteria|Rep: Cold-shock DEAD box protein A
homolog - Mycobacterium tuberculosis
Length = 563
Score = 63.3 bits (147), Expect = 4e-09
Identities = 31/64 (48%), Positives = 44/64 (68%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 427
AL+ G DV+ AQ+GTGKTA F+I +L +ID + + QAL+L PTRELA Q+ + G
Sbjct: 46 ALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYG 105
Query: 428 DHLN 439
+L+
Sbjct: 106 AYLS 109
Score = 43.6 bits (98), Expect = 0.004
Identities = 20/36 (55%), Positives = 25/36 (69%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
VVVGTPGR+ D + R L + + VLDEADEML+
Sbjct: 135 VVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLT 170
>UniRef50_UPI0000499D6F Cluster: DEAD/DEAH box helicase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: DEAD/DEAH box
helicase - Entamoeba histolytica HM-1:IMSS
Length = 585
Score = 62.9 bits (146), Expect = 6e-09
Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 8/92 (8%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQIQK 409
L+ RD+IA A++GTGKT + I ++Q + +TS AL+LAPTRELA QIQK
Sbjct: 211 LKMRDLIALAETGTGKTFAYLIPLIQFVLKLPKLTEETSASGPYALVLAPTRELALQIQK 270
Query: 410 VVIALGDHLNAKCHACIGGTNVREDIRQLESG 505
+ L + CIGG ++ I +L +G
Sbjct: 271 ETLKLATPFGLRVCCCIGGEPMQPQIEELSNG 302
>UniRef50_Q89UH0 Cluster: Dead-box ATP-dependent RNA helicase; n=23;
Alphaproteobacteria|Rep: Dead-box ATP-dependent RNA
helicase - Bradyrhizobium japonicum
Length = 530
Score = 62.9 bits (146), Expect = 6e-09
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQALILAPTRELAQQIQKVVI 418
L GRDV+ AQ+GTGKTA+F++ IL +I + + L+L+PTREL+ QI
Sbjct: 51 LTGRDVVGIAQTGTGKTASFALPILHRLLEHRIKPQPKTTRVLVLSPTRELSGQILDSFN 110
Query: 419 ALGDHLNAKCHACIGGTNVREDIRQLESGV 508
A G H+ IGG + +R L GV
Sbjct: 111 AYGRHIRLSSTLAIGGVPMGRQVRSLMQGV 140
Score = 38.7 bits (86), Expect = 0.11
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
V+V TPGR+ D++ L +++ VLDEAD ML
Sbjct: 142 VLVATPGRLLDLVQSNGLKLGSVEFLVLDEADRML 176
>UniRef50_Q0G0P8 Cluster: Superfamily II DNA and RNA helicase; n=2;
Aurantimonadaceae|Rep: Superfamily II DNA and RNA
helicase - Fulvimarina pelagi HTCC2506
Length = 457
Score = 62.9 bits (146), Expect = 6e-09
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDT-----SIRECQALILAPTRELAQQIQKVVI 418
L GRD++ AQ+GTGKTA F++ +L + T + R +ALIL+PTRELA QI + +
Sbjct: 39 LAGRDMLGIAQTGTGKTAAFALPLLHHLMTVGGKPTTRTTKALILSPTRELAVQIAESIA 98
Query: 419 ALGDHLNAKCHACIGGTNVREDIRQLESGV 508
L + GG +VR I+ L GV
Sbjct: 99 DLSEGTPISHCVVFGGVSVRPQIQALARGV 128
Score = 37.5 bits (83), Expect = 0.26
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++V TPGR+ D++ +RA+ + +LDEAD ML
Sbjct: 130 ILVATPGRLLDLMEQRAIDLRETRHLILDEADRML 164
>UniRef50_Q0C4R1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=1; Hyphomonas neptunium ATCC 15444|Rep:
ATP-dependent RNA helicase, DEAD/DEAH box family -
Hyphomonas neptunium (strain ATCC 15444)
Length = 708
Score = 62.9 bits (146), Expect = 6e-09
Identities = 34/91 (37%), Positives = 56/91 (61%), Gaps = 7/91 (7%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI----DTSIRECQA---LILAPTRELAQQIQKV 412
L+GRD++ A++G+GKT F ++I ++ DT + LI+APTRELA Q+ +
Sbjct: 35 LEGRDLLVSARTGSGKTVAFGLAIANELLGGEDTFLIRAATPLGLIIAPTRELALQVARE 94
Query: 413 VIALGDHLNAKCHACIGGTNVREDIRQLESG 505
+ L + NA+ C+GG ++R++ R LE G
Sbjct: 95 LRWLYANTNAEIATCVGGMDMRDERRALERG 125
Score = 44.8 bits (101), Expect = 0.002
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++VVGTPGR+ D I R + + I+ VLDEADEML
Sbjct: 127 HIVVGTPGRLVDHINRGSFDTSAIRAVVLDEADEML 162
>UniRef50_Q7QNT5 Cluster: GLP_88_2286_3572; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_88_2286_3572 - Giardia lamblia ATCC
50803
Length = 428
Score = 62.9 bits (146), Expect = 6e-09
Identities = 29/85 (34%), Positives = 48/85 (56%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
L+QG+ + AQ+G+GKTA F IS+L ++ CQA+I++PT+EL+ Q +V+ LG
Sbjct: 37 LIQGQSISVNAQTGSGKTAAFGISLLSLVNPQKSICQAVIISPTKELSNQTLEVINTLGT 96
Query: 431 HLNAKCHACIGGTNVREDIRQLESG 505
+ G +E ++ G
Sbjct: 97 RSGIRGVCLTSGVMAKEQFEKITKG 121
>UniRef50_Q688Z4 Cluster: Putative uncharacterized protein; n=3;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 871
Score = 62.9 bits (146), Expect = 6e-09
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDT-SIRECQALILAPTRELAQQIQKVVIALG 427
++ G+DV+A +++G+GKTA F I +LQ++ +AL+++PTRELA Q KVV LG
Sbjct: 58 IMDGKDVVAMSRTGSGKTAAFVIPMLQKLKRRDTTGIRALMVSPTRELALQTFKVVKELG 117
Query: 428 DHLNAKCHACIGGTNVRE 481
+C +GG + E
Sbjct: 118 RFTGLRCACLVGGDQIEE 135
>UniRef50_Q88NB7 Cluster: ATP-dependent RNA helicase rhlB; n=18;
Proteobacteria|Rep: ATP-dependent RNA helicase rhlB -
Pseudomonas putida (strain KT2440)
Length = 398
Score = 62.9 bits (146), Expect = 6e-09
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 7/90 (7%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTS-------IRECQALILAPTRELAQQIQKV 412
L+G+D I +AQ+GTGKTA F ISI+ Q+ + + E +ALI+APTREL QI K
Sbjct: 44 LRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKD 103
Query: 413 VIALGDHLNAKCHACIGGTNVREDIRQLES 502
AL + + +GG + + ++ LE+
Sbjct: 104 AAALTKYTGLNVMSFVGGMDFDKQLKALEA 133
Score = 41.1 bits (92), Expect = 0.021
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +1
Query: 505 CYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
C ++V TPGR+ D R +H + +++ VLDEAD ML
Sbjct: 136 CDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRML 172
>UniRef50_Q8SQK9 Cluster: ATP-dependent RNA helicase DHH1; n=1;
Encephalitozoon cuniculi|Rep: ATP-dependent RNA helicase
DHH1 - Encephalitozoon cuniculi
Length = 489
Score = 62.9 bits (146), Expect = 6e-09
Identities = 29/86 (33%), Positives = 56/86 (65%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+L G++++ ++++GTGKTA++ + +L I++S Q +IL P RELA QI + V + +
Sbjct: 142 VLGGKNLLVRSKNGTGKTASYIVPMLNMINSSELSIQGIILVPIRELALQISRNVKRMSE 201
Query: 431 HLNAKCHACIGGTNVREDIRQLESGV 508
+GGT++++DI ++ +GV
Sbjct: 202 GTGVISAPVVGGTSMQDDIIRVSNGV 227
Score = 36.7 bits (81), Expect = 0.45
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+V+VGTPGR+ D++ +R + + V DEAD++L
Sbjct: 228 HVMVGTPGRIVDLVEKRVGTLSKRVILVFDEADKLL 263
>UniRef50_Q9KKW0 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=19; Vibrio cholerae|Rep: ATP-dependent RNA
helicase, DEAD box family - Vibrio cholerae
Length = 428
Score = 62.5 bits (145), Expect = 8e-09
Identities = 32/78 (41%), Positives = 48/78 (61%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 427
A+L G+DV A A +G+GKT + + +L+++ TS E QAL+L PTRELA Q+ +V+ +G
Sbjct: 55 AMLTGKDVFALANTGSGKTLAYGLPLLERLKTS-PEQQALVLVPTRELAMQVSEVLTHVG 113
Query: 428 DHLNAKCHACIGGTNVRE 481
L GG + E
Sbjct: 114 TALGLNTLCLCGGVDKTE 131
Score = 33.5 bits (73), Expect = 4.2
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++V T GR++D+ T+ L N + VLDEAD +L
Sbjct: 142 ILVATTGRLFDL-TQSGLRLNRVTTLVLDEADRLL 175
>UniRef50_Q12B10 Cluster: DEAD/DEAH box helicase-like; n=13;
Proteobacteria|Rep: DEAD/DEAH box helicase-like -
Polaromonas sp. (strain JS666 / ATCC BAA-500)
Length = 422
Score = 62.5 bits (145), Expect = 8e-09
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDT----SIRECQALILAPTRELAQQIQKVV 415
A+L GRDV+ AQ+G+GKTA F++ +LQQ+ + R + LIL PTRELA Q+ + +
Sbjct: 38 AILLGRDVVGSAQTGSGKTAAFALPMLQQLANAPTGTPRPTRGLILVPTRELAAQVGEAI 97
Query: 416 IALGDHL--NAKCHACIGGTNVREDIRQLESG 505
+L K GG ++ + L G
Sbjct: 98 AGFAKYLPQRVKVAVVFGGVSINPQMMNLRGG 129
Score = 38.7 bits (86), Expect = 0.11
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+VV TPGR+ D++ AL + + VLDEAD +L
Sbjct: 132 IVVATPGRLLDLLEHNALKISEVSTLVLDEADRLL 166
>UniRef50_A6H0L1 Cluster: Probable ATP-dependent RNA helicase,
DEAD/DEAH box family; n=1; Flavobacterium psychrophilum
JIP02/86|Rep: Probable ATP-dependent RNA helicase,
DEAD/DEAH box family - Flavobacterium psychrophilum
(strain JIP02/86 / ATCC 49511)
Length = 644
Score = 62.5 bits (145), Expect = 8e-09
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Frame = +2
Query: 266 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH-LNA 442
D++A AQ+GTGKTA F ++Q+ID + R QALIL+PTREL QI + +
Sbjct: 42 DLVALAQTGTGKTAAFGFPVIQKIDANNRNTQALILSPTRELCLQITNELKNYSKYEKGI 101
Query: 443 KCHACIGGTNVREDIRQLESG 505
A GG ++ E R ++ G
Sbjct: 102 NVVAVYGGASITEQARDIKRG 122
Score = 44.4 bits (100), Expect = 0.002
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
++V TPGR+ DMI RR + + I +LDEADEML+
Sbjct: 125 IIVATPGRMQDMINRRLVDISQINYCILDEADEMLN 160
Score = 34.3 bits (75), Expect = 2.4
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F+ + L E LLR I GFE P+ +Q++AI
Sbjct: 4 FEQLGLTESLLRAIIDLGFENPTEVQEKAI 33
>UniRef50_Q2LZJ8 Cluster: GA19670-PA; n=1; Drosophila
pseudoobscura|Rep: GA19670-PA - Drosophila pseudoobscura
(Fruit fly)
Length = 1007
Score = 62.5 bits (145), Expect = 8e-09
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
L G D++ Q++SGTGKT + ++ LQ S + + L++ PTRELA Q+ + LG+
Sbjct: 60 LTGMDLLVQSKSGTGKTLIYVVTALQMCSLSTQHPEVLVILPTRELALQVHDIFRFLGEK 119
Query: 434 LNA-KCHACIGGTNVREDIRQLES 502
L + K + +GGT+V D +L +
Sbjct: 120 LRSFKVSSFMGGTDVTRDREKLRN 143
Score = 41.9 bits (94), Expect = 0.012
Identities = 16/36 (44%), Positives = 26/36 (72%)
Frame = +1
Query: 505 CYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 612
C+V +GTPGR+ + + L+ + +KL VLDEAD++
Sbjct: 144 CHVAIGTPGRLLQLHEKGVLNMSMVKLLVLDEADQL 179
>UniRef50_A2SQE1 Cluster: DEAD/DEAH box helicase domain protein;
n=6; cellular organisms|Rep: DEAD/DEAH box helicase
domain protein - Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z)
Length = 656
Score = 62.5 bits (145), Expect = 8e-09
Identities = 28/50 (56%), Positives = 38/50 (76%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQ 400
+L G+DV QAQ+GTGKTA F I I++++D + QAL+L+PTRELA Q
Sbjct: 39 ILDGKDVTGQAQTGTGKTAAFGIPIIERLDPDNKNVQALVLSPTRELAIQ 88
Score = 50.4 bits (115), Expect = 3e-05
Identities = 21/35 (60%), Positives = 28/35 (80%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
VV+GTPGRV D I R LH +++ +F+LDEAD+ML
Sbjct: 127 VVIGTPGRVIDHIKRGTLHLDSVTMFILDEADQML 161
>UniRef50_P75172 Cluster: Probable ATP-dependent RNA helicase MG425
homolog; n=4; Mycoplasma|Rep: Probable ATP-dependent RNA
helicase MG425 homolog - Mycoplasma pneumoniae
Length = 450
Score = 62.5 bits (145), Expect = 8e-09
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIALG 427
LQ +++I + +GTGKTA F I +++ + S Q L++APTRELA+QI+ I
Sbjct: 38 LQHQNLIVHSPTGTGKTAVFGIPVIETLLKKPSKGTTQTLVVAPTRELAEQIKTTFINFA 97
Query: 428 DHLNAKCHACIGGTNVREDIRQLES 502
H + K + IGG + + ++QLE+
Sbjct: 98 KHTHLKVVSLIGGIPIWQQLKQLEN 122
Score = 34.7 bits (76), Expect = 1.8
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
+VVGT GRV D++ R + ++ ++DE D ML R
Sbjct: 126 IVVGTMGRVMDLLERGVIKFEHLEHLIIDEVDLMLDR 162
>UniRef50_O49289 Cluster: Putative DEAD-box ATP-dependent RNA
helicase 29; n=4; core eudicotyledons|Rep: Putative
DEAD-box ATP-dependent RNA helicase 29 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 845
Score = 62.5 bits (145), Expect = 8e-09
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVVIAL 424
+L G DV+A A++G+GKTA F I +L+++ + + +ALIL+PTR+LA+Q K L
Sbjct: 62 ILSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKEL 121
Query: 425 GDHLNAKCHACIGGTNVREDIRQLESG 505
G + + +GG ++ + +L G
Sbjct: 122 GKFTDLRVSLLVGGDSMEDQFEELTKG 148
>UniRef50_A5E058 Cluster: Pre-mRNA-processing ATP-dependent RNA
helicase PRP5; n=1; Lodderomyces elongisporus NRRL
YB-4239|Rep: Pre-mRNA-processing ATP-dependent RNA
helicase PRP5 - Lodderomyces elongisporus (Yeast)
(Saccharomyces elongisporus)
Length = 994
Score = 62.5 bits (145), Expect = 8e-09
Identities = 31/91 (34%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVV 415
+L GRD+I A++G+GKT ++ + +++ I + L+L+PTRELA QI+K +
Sbjct: 422 VLSGRDMIGVAKTGSGKTLSYVLPMVRHIQDQLFPKPGEGPIGLVLSPTRELALQIEKEI 481
Query: 416 IALGDHLNAKCHACIGGTNVREDIRQLESGV 508
+ ++ K C GG+N+ I +L+ GV
Sbjct: 482 LKFSSTMDLKVCCCYGGSNIENQISELKRGV 512
>UniRef50_P20448 Cluster: ATP-dependent RNA helicase DBP4; n=13;
Saccharomycetales|Rep: ATP-dependent RNA helicase DBP4 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 770
Score = 62.5 bits (145), Expect = 8e-09
Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 4/85 (4%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQID----TSIRECQALILAPTRELAQQIQKVVIA 421
LQG DV+A A++G+GKT F + +++++ T ALI++PTRELA QI +V+
Sbjct: 76 LQGHDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAMQIYEVLTK 135
Query: 422 LGDHLNAKCHACIGGTNVREDIRQL 496
+G H + IGG +V+ ++ ++
Sbjct: 136 IGSHTSFSAGLVIGGKDVKFELERI 160
>UniRef50_Q6MBR0 Cluster: Putative ATP-dependent RNA helicase; n=1;
Candidatus Protochlamydia amoebophila UWE25|Rep:
Putative ATP-dependent RNA helicase - Protochlamydia
amoebophila (strain UWE25)
Length = 407
Score = 62.1 bits (144), Expect = 1e-08
Identities = 32/82 (39%), Positives = 49/82 (59%)
Frame = +2
Query: 263 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 442
+D+IA +Q+G+GKTAT +I I +++T + + QALI+ PTRELA Q +G +
Sbjct: 53 QDLIALSQTGSGKTATCAIPICNRVNTELTDIQALIIVPTRELALQYATETQKIGKYKGV 112
Query: 443 KCHACIGGTNVREDIRQLESGV 508
K A GG + +L+ GV
Sbjct: 113 KAFAIFGGEDSALQQSKLKHGV 134
Score = 40.7 bits (91), Expect = 0.027
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
V+V TPGR+ D I R + + ++ +LDEADEMLS
Sbjct: 136 VLVATPGRLIDFIYSRQIDLSHVETLILDEADEMLS 171
>UniRef50_Q11TW3 Cluster: Possible ATP-dependent RNA helicase; n=5;
Bacteria|Rep: Possible ATP-dependent RNA helicase -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 388
Score = 62.1 bits (144), Expect = 1e-08
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 6/90 (6%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDT----SIRECQALILAPTRELAQQIQKVV 415
A+L+G+D++ AQ+G+GKTA+F + ILQ + T R AL+L PTRELA Q+ +V
Sbjct: 42 AILKGKDILGIAQTGSGKTASFVLPILQMLQTKPLGKNRHINALVLVPTRELAVQVGQVF 101
Query: 416 IALGDHL--NAKCHACIGGTNVREDIRQLE 499
A + L K A GG ++ + QL+
Sbjct: 102 QAFSNALPNKIKSLAVYGGVSINPQMIQLQ 131
Score = 41.1 bits (92), Expect = 0.021
Identities = 14/36 (38%), Positives = 29/36 (80%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
+++ TPGR+ D++ +A++ + +++ VLDEAD+ML+
Sbjct: 135 ILIATPGRLLDLVDSKAVYLSDVEVLVLDEADKMLN 170
>UniRef50_Q0AVQ9 Cluster: ATP-dependent RNA helicase; n=1;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
ATP-dependent RNA helicase - Syntrophomonas wolfei
subsp. wolfei (strain Goettingen)
Length = 530
Score = 62.1 bits (144), Expect = 1e-08
Identities = 32/81 (39%), Positives = 49/81 (60%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
+ G D++ QAQ+GTGKTA+F I IL ++ QAL+L PTRELA Q+ + + +L
Sbjct: 39 MAGLDLMGQAQTGTGKTASFGIPILNRVIKG-EGLQALVLCPTRELAVQVTEEISSLSRR 97
Query: 434 LNAKCHACIGGTNVREDIRQL 496
+ + A GG ++ +R L
Sbjct: 98 MRIQVLAIYGGQSIELQLRSL 118
Score = 42.3 bits (95), Expect = 0.009
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++VGTPGR+ D + R + + +K VLDEADEML
Sbjct: 124 IIVGTPGRLMDHMNRGTISLSPLKYVVLDEADEML 158
Score = 32.3 bits (70), Expect = 9.6
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +3
Query: 150 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
E F M LK +LL+ I GFEKP+ IQ ++I
Sbjct: 4 ENFYSMGLKTDLLQMIDEKGFEKPTPIQVKSI 35
>UniRef50_Q8MZI3 Cluster: GH10652p; n=2; Drosophila
melanogaster|Rep: GH10652p - Drosophila melanogaster
(Fruit fly)
Length = 818
Score = 62.1 bits (144), Expect = 1e-08
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVI 418
+ GRD++ AQ+G+GKT + + + I+ R + AL+LAPTRELAQQIQ+V I
Sbjct: 192 MSGRDLVGVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAPTRELAQQIQQVAI 251
Query: 419 ALGDHLNAKCHACIGGTNVREDIRQLESGV 508
G + + + GG + R LE GV
Sbjct: 252 EFGSNTHVRNTCIFGGAPKGQQARDLERGV 281
Score = 33.9 bits (74), Expect = 3.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+V+ TPGR+ D + R VLDEAD ML
Sbjct: 283 IVIATPGRLIDFLERGTTSLKRCTYLVLDEADRML 317
>UniRef50_Q8EJQ5 Cluster: ATP-dependent RNA helicase rhlB; n=62;
Gammaproteobacteria|Rep: ATP-dependent RNA helicase rhlB
- Shewanella oneidensis
Length = 439
Score = 62.1 bits (144), Expect = 1e-08
Identities = 39/105 (37%), Positives = 54/105 (51%), Gaps = 9/105 (8%)
Frame = +2
Query: 221 FCNP--ATRNXALLQGRDVIAQAQSGTGKTATFSISILQQIDTS-------IRECQALIL 373
FC P A LLQ +D+ QAQ+GTGKT F ++ + +S + + +A+I+
Sbjct: 31 FCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSSSIPEGRQLNQPRAIIM 90
Query: 374 APTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
APTRELA QI K I L H K GG + + L+ GV
Sbjct: 91 APTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRKVLDQGV 135
Score = 36.3 bits (80), Expect = 0.59
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 612
+++GT GR+ D + + ++ N I+ VLDEAD M
Sbjct: 137 ILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRM 170
>UniRef50_Q56XG6 Cluster: DEAD-box ATP-dependent RNA helicase 15;
n=27; Eukaryota|Rep: DEAD-box ATP-dependent RNA helicase
15 - Arabidopsis thaliana (Mouse-ear cress)
Length = 427
Score = 62.1 bits (144), Expect = 1e-08
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +2
Query: 260 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 436
G DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +L
Sbjct: 83 GMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLP 142
Query: 437 NAKCHACIGGTNVR 478
+ K GG N++
Sbjct: 143 DTKVSVFYGGVNIK 156
Score = 39.1 bits (87), Expect = 0.084
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++VVGTPGRV + + L ++ F+LDE D+ML
Sbjct: 168 HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKML 203
Score = 32.3 bits (70), Expect = 9.6
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F D LK ELLR I GFE PS +Q I
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECI 77
>UniRef50_Q31AC4 Cluster: DEAD/DEAH box helicase-like protein; n=7;
Prochlorococcus marinus|Rep: DEAD/DEAH box helicase-like
protein - Prochlorococcus marinus (strain MIT 9312)
Length = 593
Score = 61.7 bits (143), Expect = 1e-08
Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQIQKVVIAL- 424
L+ GRD++ QAQ+GTGKTA F++ +++++ D + L++ PTRELA Q+ + +
Sbjct: 85 LMLGRDLLGQAQTGTGKTAAFALPLIEKLADNKELNAKVLVMTPTRELATQVAESFKSYS 144
Query: 425 GDHLNAKCHACIGGTNVREDIRQLESGV 508
+ N K A GGT+ R I L+ V
Sbjct: 145 SESTNFKTIAIYGGTDYRNQIYALKRKV 172
Score = 45.2 bits (102), Expect = 0.001
Identities = 21/36 (58%), Positives = 25/36 (69%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
VVVGTPGR+ D I + N+I VLDEADEML+
Sbjct: 174 VVVGTPGRIMDHIRQGTFKVNSINCLVLDEADEMLN 209
>UniRef50_A6TUK6 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Firmicutes|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 484
Score = 61.7 bits (143), Expect = 1e-08
Identities = 30/72 (41%), Positives = 47/72 (65%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 427
A+L+ +D+I ++Q+G+GKTA F+I I Q +D + QAL+L PTRELA Q+++ + +G
Sbjct: 37 AILEHKDIIVKSQTGSGKTAAFAIPICQLVDWDENKPQALVLVPTRELAIQVKEDMFNIG 96
Query: 428 DHLNAKCHACIG 463
K A G
Sbjct: 97 RFKRLKVAAVYG 108
Score = 41.9 bits (94), Expect = 0.012
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
+VVVGTPGR+ D + + + IK V+DEADEM +
Sbjct: 124 HVVVGTPGRIIDHMEKGTFDTSQIKYLVIDEADEMFN 160
>UniRef50_Q17JB5 Cluster: DEAD box ATP-dependent RNA helicase; n=4;
Eukaryota|Rep: DEAD box ATP-dependent RNA helicase -
Aedes aegypti (Yellowfever mosquito)
Length = 699
Score = 61.7 bits (143), Expect = 1e-08
Identities = 38/89 (42%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKVVI 418
L GRD++ AQ+G+GKT + L I +R AL+LAPTRELAQQIQ+V
Sbjct: 157 LSGRDMVGIAQTGSGKTLAYIAPALVHITHQDQLRRGDGPIALVLAPTRELAQQIQQVAT 216
Query: 419 ALGDHLNAKCHACIGGTNVREDIRQLESG 505
G +NA GG IR LE G
Sbjct: 217 DFGQRINANNTCVFGGAPKGPQIRDLERG 245
Score = 34.3 bits (75), Expect = 2.4
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+V+ TPGR+ D + R + VLDEAD ML
Sbjct: 248 IVIATPGRLIDFLERGITNLRRCTYLVLDEADRML 282
>UniRef50_Q5KME7 Cluster: Pre-mRNA-processing ATP-dependent RNA
helicase PRP5; n=1; Filobasidiella neoformans|Rep:
Pre-mRNA-processing ATP-dependent RNA helicase PRP5 -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 1072
Score = 61.7 bits (143), Expect = 1e-08
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQI----DTSIRECQ-ALILAPTRELAQQIQKV 412
A++ GRDVI A++G+GKT F + +L+ + S E A++++PTRELA QI K
Sbjct: 436 AIMSGRDVIGIAKTGSGKTVAFLLPMLRHVRDQRPVSGSEGPIAVVMSPTRELASQIYKE 495
Query: 413 VIALGDHLNAKCHACIGGTNVREDIRQLESG 505
LN + C+GG+++ EDI ++ G
Sbjct: 496 CQPFLKVLNIRASCCVGGSSISEDIAAMKKG 526
>UniRef50_Q8YH70 Cluster: ATP-DEPENDENT RNA HELICASE RHLE; n=10;
Rhizobiales|Rep: ATP-DEPENDENT RNA HELICASE RHLE -
Brucella melitensis
Length = 535
Score = 61.3 bits (142), Expect = 2e-08
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 5/90 (5%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVI 418
L+G+D++ AQ+G+GKTA FS+ ILQ+I + +ALILAPTRELA QI++ +
Sbjct: 122 LEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTARALILAPTRELAVQIEQTIR 181
Query: 419 ALGDHLNAKCHACIGGTNVREDIRQLESGV 508
+ + +GG + I+++ G+
Sbjct: 182 NVSKSAHISTALVLGGVSKLSQIKRIAPGI 211
>UniRef50_Q5FS73 Cluster: ATP-dependent RNA helicase; n=2;
Gluconobacter oxydans|Rep: ATP-dependent RNA helicase -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 432
Score = 61.3 bits (142), Expect = 2e-08
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE-----CQALILAPTRELAQQIQKVV 415
LL+GRD++ AQ+GTGKTA+F++ +L ++ + R + L+LAPTREL QI
Sbjct: 41 LLEGRDLLGLAQTGTGKTASFALPLLHRLAATPRPAPKNGARVLVLAPTRELVSQIADGF 100
Query: 416 IALGDHLNAKCHACIGGTNVREDIRQLESGV 508
+ H + GG + ++ LE GV
Sbjct: 101 ESFSRHQPVRVTTIFGGVSQVHQVKALEEGV 131
Score = 34.7 bits (76), Expect = 1.8
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++V PGR+ D+I + + ++ VLDEAD+ML
Sbjct: 133 IIVAAPGRLLDLIEQGLCDLSQLETLVLDEADQML 167
>UniRef50_Q44NG9 Cluster: Helicase, C-terminal:DEAD/DEAH box
helicase, N-terminal; n=9; Bacteroidetes/Chlorobi
group|Rep: Helicase, C-terminal:DEAD/DEAH box helicase,
N-terminal - Chlorobium limicola DSM 245
Length = 499
Score = 61.3 bits (142), Expect = 2e-08
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDT-----SIRECQALILAPTRELAQQIQKVV 415
+L G D++ AQ+GTGKTA F+I +LQ ++ R+ ++LI+ PTRELA QI +
Sbjct: 116 ILDGNDLLGCAQTGTGKTAAFAIPVLQLLNAVKTNEKKRKIRSLIITPTRELAIQIGESF 175
Query: 416 IALGDHLNAKCHACIGGTNVREDIRQLESGV 508
A G H GG N L+ G+
Sbjct: 176 KAYGRHTGLTSTVIFGGVNQNPQTASLQKGI 206
Score = 42.7 bits (96), Expect = 0.007
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+++ TPGR+ D++ + LH I+ FVLDEAD ML
Sbjct: 208 ILIATPGRLLDLMNQGHLHLRNIEFFVLDEADRML 242
>UniRef50_A6NSW7 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 400
Score = 61.3 bits (142), Expect = 2e-08
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
++ +DVIA+A +GTGKT F I +++ ID QAL+LAPTRELA QIQ + L +
Sbjct: 47 MEWKDVIAKAPTGTGKTFAFGIPMVEHIDPESDAVQALVLAPTRELALQIQDELRDLCEF 106
Query: 434 LNAKCHACI-GGTNVREDIRQLE 499
C+ GG + + I L+
Sbjct: 107 KEGVRSVCLYGGAPIEKQITTLK 129
Score = 39.1 bits (87), Expect = 0.084
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+VV TPGR+ D + RR + + ++ VLDEAD ML
Sbjct: 134 IVVATPGRLMDHMKRRTVKLDKVETVVLDEADRML 168
>UniRef50_A6DL95 Cluster: Probable ATP-dependent RNA helicase; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable
ATP-dependent RNA helicase - Lentisphaera araneosa
HTCC2155
Length = 482
Score = 61.3 bits (142), Expect = 2e-08
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+LQG+D + +A++GTGKTA F+I LQ + ++ Q LIL P REL +QI + I LG
Sbjct: 39 ILQGQDALVRAKTGTGKTAAFAIPALQHLRAEVQHPQVLILTPGRELCKQISQEFIKLGK 98
Query: 431 HL-NAKCHACIGG 466
L N + GG
Sbjct: 99 GLENFRVAEVTGG 111
Score = 34.3 bits (75), Expect = 2.4
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 612
V+ TPGR+ D+ + L++N I + V+DEAD +
Sbjct: 126 VISATPGRLIDIKEQGLLNSNCINMLVIDEADRL 159
Score = 33.5 bits (73), Expect = 4.2
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F D+ LK+ +L IY G++KP+ IQ +++
Sbjct: 7 FQDLGLKKTILSAIYTAGYKKPTPIQNKSL 36
>UniRef50_A3I1F5 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Algoriphagus sp. PR1|Rep: DEAD/DEAH box helicase-like
protein - Algoriphagus sp. PR1
Length = 399
Score = 61.3 bits (142), Expect = 2e-08
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 427
ALL+GRD++ + +G+GKT F I I++ + + ALI+ PTRELA QI + +L
Sbjct: 88 ALLEGRDLLGISNTGSGKTGAFLIPIIEHALKNPGQFTALIVTPTRELALQIDQEFKSLS 147
Query: 428 DHLNAKCHACIGGTNVREDIRQL 496
+ IGGTN+ D++ L
Sbjct: 148 KGMRLHSATFIGGTNINTDMKVL 170
Score = 44.8 bits (101), Expect = 0.002
Identities = 19/36 (52%), Positives = 25/36 (69%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+V+VGTPGR+ D+ R+ L N +K VLDE D ML
Sbjct: 175 HVIVGTPGRLLDLTNRKLLKLNQVKTLVLDEFDRML 210
>UniRef50_A2U1Q9 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family protein; n=4; Flavobacteriaceae|Rep:
ATP-dependent RNA helicase, DEAD/DEAH box family protein
- Polaribacter dokdonensis MED152
Length = 373
Score = 61.3 bits (142), Expect = 2e-08
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Frame = +2
Query: 266 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 445
D I AQ+GTGKTA F + +L ID + QALIL+PTREL QQI+K + +++ +
Sbjct: 42 DFIGLAQTGTGKTAAFGLPVLHHIDANSDHIQALILSPTRELVQQIKKQLFKFTKYVDDR 101
Query: 446 --CHACIGGTNVREDIRQLE 499
A GG + + L+
Sbjct: 102 IFLEAVFGGEKIDRQMNNLK 121
Score = 45.6 bits (103), Expect = 0.001
Identities = 19/37 (51%), Positives = 28/37 (75%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
++V+ TPGR+ D+I R A+ + +K +LDEADEMLS
Sbjct: 125 HIVIATPGRLIDLIERGAVDISHVKTVILDEADEMLS 161
>UniRef50_Q7QP86 Cluster: GLP_397_1016_18; n=1; Giardia lamblia ATCC
50803|Rep: GLP_397_1016_18 - Giardia lamblia ATCC 50803
Length = 332
Score = 61.3 bits (142), Expect = 2e-08
Identities = 33/83 (39%), Positives = 50/83 (60%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
+QGRD A++G+GKT F++ ILQ++ AL+L PTRELA QI++ + A G+
Sbjct: 96 MQGRDFCGIARTGSGKTLCFALPILQELSQDPYGIFALVLTPTRELALQIEQQMNAYGNP 155
Query: 434 LNAKCHACIGGTNVREDIRQLES 502
L + + IGG + E L+S
Sbjct: 156 LGIQAQSLIGGKDSVEQSAILDS 178
>UniRef50_Q4Q1P0 Cluster: DEAD box RNA helicase, putative; n=5;
Trypanosomatidae|Rep: DEAD box RNA helicase, putative -
Leishmania major
Length = 657
Score = 61.3 bits (142), Expect = 2e-08
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 6/94 (6%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTS----IRECQALILAPTRELAQQIQKVV 415
A LQGRD++A+A++G GKT F I I++ + S A+I+ PTREL QI+ V+
Sbjct: 196 AALQGRDLLAEAKTGAGKTLAFLIPIVEIVCRSGFRPSNGTAAIIIGPTRELCLQIEGVL 255
Query: 416 IALGDHLNAKCH--ACIGGTNVREDIRQLESGVM 511
+ L H N CIGG + ++ +L +G+M
Sbjct: 256 LKLLKHFNGSLTFLCCIGGQSRNQEGFKLANGIM 289
>UniRef50_Q8SQM5 Cluster: ATP-dependent RNA helicase eIF4A; n=1;
Encephalitozoon cuniculi|Rep: ATP-dependent RNA helicase
eIF4A - Encephalitozoon cuniculi
Length = 425
Score = 61.3 bits (142), Expect = 2e-08
Identities = 35/83 (42%), Positives = 47/83 (56%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
++ GRD+ AQAQSGTGKT F+++ LQ D S Q L+LA TRE+A Q LG
Sbjct: 72 IIDGRDIRAQAQSGTGKTGAFAVAALQICDMSQDVTQILVLASTREIAAQNAARFEDLGC 131
Query: 431 HLNAKCHACIGGTNVREDIRQLE 499
+ A+ GG+ + D LE
Sbjct: 132 FMGARVALLSGGSPIAADKVALE 154
Score = 48.8 bits (111), Expect = 1e-04
Identities = 23/36 (63%), Positives = 27/36 (75%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++VVGTPGRV MI L + IKLFV+DEADEML
Sbjct: 158 HIVVGTPGRVEHMININELSMDNIKLFVIDEADEML 193
Score = 48.0 bits (109), Expect = 2e-04
Identities = 21/42 (50%), Positives = 31/42 (73%)
Frame = +3
Query: 126 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIXP 251
D+ ++ +T++D LKE+LL+GIY+ GFE PS IQ+ AI P
Sbjct: 30 DSSQIRMFDTWEDYGLKEDLLKGIYSIGFETPSFIQKAAIQP 71
>UniRef50_P44586 Cluster: Cold-shock DEAD box protein A homolog;
n=20; Pasteurellaceae|Rep: Cold-shock DEAD box protein A
homolog - Haemophilus influenzae
Length = 613
Score = 61.3 bits (142), Expect = 2e-08
Identities = 28/51 (54%), Positives = 38/51 (74%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 403
LL G DV+ AQ+G+GKTA F++ +L QID S + Q L++APTRELA Q+
Sbjct: 39 LLNGNDVLGMAQTGSGKTAAFALPLLAQIDPSEKHPQMLVMAPTRELAIQV 89
Score = 46.0 bits (104), Expect = 7e-04
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
VVVGTPGR+ D I R L+ + ++ VLDEADEML
Sbjct: 127 VVVGTPGRILDHIRRGTLNLSELRFIVLDEADEML 161
Score = 33.9 bits (74), Expect = 3.1
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 153 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
TF+D+ L E +L+ + GFE PS IQQ I
Sbjct: 6 TFNDLGLPEFILKAVSDLGFETPSPIQQSCI 36
>UniRef50_A4RIF1 Cluster: ATP-dependent RNA helicase DBP5; n=7;
Ascomycota|Rep: ATP-dependent RNA helicase DBP5 -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 504
Score = 61.3 bits (142), Expect = 2e-08
Identities = 30/56 (53%), Positives = 43/56 (76%), Gaps = 1/56 (1%)
Frame = +2
Query: 263 RDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQIQKVVIALG 427
R++IAQ+QSGTGKT F ++IL ++D + QAL LAP+RELA+QIQ V+ ++G
Sbjct: 136 RNMIAQSQSGTGKTGAFVVTILSRVDFNQPNQPQALALAPSRELARQIQSVIQSIG 191
Score = 47.6 bits (108), Expect = 2e-04
Identities = 23/43 (53%), Positives = 28/43 (65%)
Frame = +1
Query: 493 TGEWCYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
TG VVVGTPG V D+I RR + +KL V+DEAD ML +
Sbjct: 211 TGVKANVVVGTPGTVMDLIRRRQFDVSQLKLLVVDEADNMLDQ 253
>UniRef50_Q2YZZ9 Cluster: Putative uncharacterized protein; n=1;
uncultured candidate division OP8 bacterium|Rep:
Putative uncharacterized protein - uncultured candidate
division OP8 bacterium
Length = 453
Score = 60.9 bits (141), Expect = 2e-08
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQ-IDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+ GRDV+A A +G+GKTA F + IL Q ID +AL++ PTRELA QI + + L
Sbjct: 36 MSGRDVMASAVTGSGKTAAFLLPILHQLIDRPRGTTRALVITPTRELAAQILEDLNDLAV 95
Query: 431 HLNAKCHACIGGTNVREDIRQLESGV 508
H A GG ++R GV
Sbjct: 96 HTPISAAAVFGGVSIRPQEHAFRRGV 121
>UniRef50_A7BCL2 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 722
Score = 60.9 bits (141), Expect = 2e-08
Identities = 29/55 (52%), Positives = 38/55 (69%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVV 415
LL+ RDV+ AQ+GTGKTA F + +L +D R QAL+LAPTRELA Q + +
Sbjct: 79 LLELRDVVGIAQTGTGKTAAFGLPLLAIVDADERNVQALVLAPTRELAMQSAQAI 133
Score = 48.4 bits (110), Expect = 1e-04
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
VVVGTPGRV D+I + AL + +++ VLDEADEML
Sbjct: 167 VVVGTPGRVIDLIEKGALDLSHVRMLVLDEADEML 201
>UniRef50_Q4N9Q9 Cluster: DEAD box RNA helicase, putative; n=3;
Piroplasmida|Rep: DEAD box RNA helicase, putative -
Theileria parva
Length = 501
Score = 60.9 bits (141), Expect = 2e-08
Identities = 27/61 (44%), Positives = 44/61 (72%)
Frame = +2
Query: 266 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 445
++IAQA++G+GKTATF++++L +++ ++ QAL + PTRELA Q +V+ LG K
Sbjct: 139 NIIAQAKNGSGKTATFALAMLSKVNVNVPLVQALCICPTRELATQNVQVIQKLGQFTQIK 198
Query: 446 C 448
C
Sbjct: 199 C 199
Score = 45.6 bits (103), Expect = 0.001
Identities = 19/51 (37%), Positives = 34/51 (66%)
Frame = +1
Query: 469 QCP*RYSPTGEWCYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
QCP RY ++ ++ VGTPG+ D + +R ++ + + VLDEADE++++
Sbjct: 205 QCP-RYEDNDQY-HLYVGTPGKTMDFLKKRIMNVTNVVMLVLDEADELINQ 253
>UniRef50_A1IIT5 Cluster: RNA helicase; n=1; Neobenedenia
girellae|Rep: RNA helicase - Neobenedenia girellae
Length = 634
Score = 60.9 bits (141), Expect = 2e-08
Identities = 39/98 (39%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI-DTSIREC-----------QALILAPTRELA 394
LL GRD +A AQ+G+GKTA F + IL+ + D S +A+++ PT ELA
Sbjct: 240 LLAGRDALATAQTGSGKTAAFMLPILKTVLDPSKGPVLGVAADGKPAPRAIVVVPTHELA 299
Query: 395 QQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
QQI + + + H GG NVR D+ QL SGV
Sbjct: 300 QQILFEGMKFATGTSVRVHLTHGGVNVRHDLMQLRSGV 337
>UniRef50_A4UCU0 Cluster: DEAD box polypeptide 47 isoform 1 variant;
n=9; Coelomata|Rep: DEAD box polypeptide 47 isoform 1
variant - Homo sapiens (Human)
Length = 182
Score = 60.9 bits (141), Expect = 2e-08
Identities = 30/71 (42%), Positives = 44/71 (61%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
LQGRD+I A++G+GKT F++ IL + + + AL+L PTRELA QI + ALG
Sbjct: 48 LQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSS 107
Query: 434 LNAKCHACIGG 466
+ + +GG
Sbjct: 108 IGVQSAVIVGG 118
>UniRef50_Q7A4G0 Cluster: Probable DEAD-box ATP-dependent RNA
helicase SA1885; n=13; Staphylococcus|Rep: Probable
DEAD-box ATP-dependent RNA helicase SA1885 -
Staphylococcus aureus (strain N315)
Length = 506
Score = 60.9 bits (141), Expect = 2e-08
Identities = 31/84 (36%), Positives = 48/84 (57%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
LQG D++ QAQ+GTGKT F I +++++ + Q+LILAPTRELA Q+ + +
Sbjct: 37 LQGIDILGQAQTGTGKTGAFGIPLIEKV-VGKQGVQSLILAPTRELAMQVAEQLREFSRG 95
Query: 434 LNAKCHACIGGTNVREDIRQLESG 505
+ GG + I+ L+ G
Sbjct: 96 QGVQVVTVFGGMPIERQIKALKKG 119
Score = 46.0 bits (104), Expect = 7e-04
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
+VVGTPGRV D + RR L + I +LDEADEM++
Sbjct: 122 IVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMN 157
>UniRef50_Q9H0S4 Cluster: Probable ATP-dependent RNA helicase DDX47;
n=32; Eukaryota|Rep: Probable ATP-dependent RNA helicase
DDX47 - Homo sapiens (Human)
Length = 455
Score = 60.9 bits (141), Expect = 2e-08
Identities = 30/71 (42%), Positives = 44/71 (61%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
LQGRD+I A++G+GKT F++ IL + + + AL+L PTRELA QI + ALG
Sbjct: 59 LQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSS 118
Query: 434 LNAKCHACIGG 466
+ + +GG
Sbjct: 119 IGVQSAVIVGG 129
>UniRef50_Q9BUQ8 Cluster: Probable ATP-dependent RNA helicase DDX23;
n=50; Eumetazoa|Rep: Probable ATP-dependent RNA helicase
DDX23 - Homo sapiens (Human)
Length = 820
Score = 60.9 bits (141), Expect = 2e-08
Identities = 41/86 (47%), Positives = 51/86 (59%), Gaps = 9/86 (10%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDT-----SIRECQ----ALILAPTRELAQQIQ 406
LQ RD+I A++G+GKTA F I +L I T I E A+ILAPTRELAQQI+
Sbjct: 426 LQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIE 485
Query: 407 KVVIALGDHLNAKCHACIGGTNVRED 484
+ I G L + A IGG + RED
Sbjct: 486 EETIKFGKPLGIRTVAVIGGIS-RED 510
Score = 37.5 bits (83), Expect = 0.26
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 505 CYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
C +V+ TPGR+ D++ R L + VLDEAD M+
Sbjct: 519 CEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMI 555
>UniRef50_Q9PGP6 Cluster: ATP-dependent RNA helicase; n=10; cellular
organisms|Rep: ATP-dependent RNA helicase - Xylella
fastidiosa
Length = 614
Score = 60.5 bits (140), Expect = 3e-08
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 427
ALL GRDV+ QAQ+GTGKTA F++ +L + + + Q L+LAPTRELA Q+ +
Sbjct: 48 ALLAGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVKPQVLVLAPTRELAIQVAEAFQRYA 107
Query: 428 DHLNA-KCHACIGGTNVREDIRQLESGV 508
++ + GG + + + L+ GV
Sbjct: 108 ASISGFRVLPVYGGQSYGQQLAALKRGV 135
Score = 46.0 bits (104), Expect = 7e-04
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+V+VGTPGRV D + R L + +K VLDEADEML
Sbjct: 136 HVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEML 171
>UniRef50_Q4FSS4 Cluster: Possible ATP-dependent DEAD/DEAH box
RNA-helicase; n=4; Gammaproteobacteria|Rep: Possible
ATP-dependent DEAD/DEAH box RNA-helicase - Psychrobacter
arcticum
Length = 567
Score = 60.5 bits (140), Expect = 3e-08
Identities = 38/89 (42%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQID--TSI-RECQALILAPTRELAQQIQKVVIAL 424
LQGRD++ AQ+G+GKTA F I +L ++ TS + +ALIL PTRELAQQ+ V
Sbjct: 79 LQGRDLLLSAQTGSGKTAAFVIPVLDRLSRATSFDKLTKALILTPTRELAQQVHDSVRTY 138
Query: 425 G-DHLNAKCHACIGGTNVREDIRQLESGV 508
D C +GG I L+ GV
Sbjct: 139 SKDMRGLFCVPLVGGAPYNGQITALKKGV 167
Score = 37.1 bits (82), Expect = 0.34
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
V+V TPGR+ D I + +++++ VLDEAD ML
Sbjct: 169 VIVATPGRLLDHINAGRVDLSSLEILVLDEADRML 203
>UniRef50_A6PQ62 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Victivallis vadensis ATCC BAA-548|Rep: DEAD/DEAH
box helicase domain protein - Victivallis vadensis ATCC
BAA-548
Length = 542
Score = 60.5 bits (140), Expect = 3e-08
Identities = 41/104 (39%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Frame = +2
Query: 221 FCNP--ATRNXALLQGRDVIAQAQSGTGKTATFSISILQQ-IDTSIRE----C-QALILA 376
+C P A ALL+GRD+ +AQ+GTGKTA F +++ + ++ + E C +AL+LA
Sbjct: 147 YCTPIQALTLPALLEGRDLAGKAQTGTGKTAAFLLAVFTRLLNHPLEERKPGCPRALVLA 206
Query: 377 PTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
PTRELA QIQK L GG + + R LE V
Sbjct: 207 PTRELAMQIQKDAEVLEIFTGLTSVVVFGGMDHEKQRRSLEQPV 250
Score = 36.7 bits (81), Expect = 0.45
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+V+GTPGR+ D +L + +++ V+DEAD ML
Sbjct: 252 LVIGTPGRIIDYSRGGSLKLSKVEVLVIDEADRML 286
>UniRef50_A3I404 Cluster: Putative uncharacterized protein; n=1;
Bacillus sp. B14905|Rep: Putative uncharacterized
protein - Bacillus sp. B14905
Length = 382
Score = 60.5 bits (140), Expect = 3e-08
Identities = 27/84 (32%), Positives = 53/84 (63%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 427
A+L+G+D++A++ +G+GKT + + +L +++ + ++ Q LI+AP++ELA QI +V+
Sbjct: 30 AMLEGKDIVAESPTGSGKTLAYVLPLLNKVNGAKKQTQGLIVAPSQELAMQIVEVIREWT 89
Query: 428 DHLNAKCHACIGGTNVREDIRQLE 499
+ IGG N I +L+
Sbjct: 90 AGTDITVQQLIGGANSARQIEKLK 113
Score = 37.1 bits (82), Expect = 0.34
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
+VVGTPGR+ ++ L I+ +LDE D++LSR
Sbjct: 118 IVVGTPGRLNELARAGKLKLKEIETVILDECDQLLSR 154
>UniRef50_Q8SY39 Cluster: LD28101p; n=3; Diptera|Rep: LD28101p -
Drosophila melanogaster (Fruit fly)
Length = 827
Score = 60.5 bits (140), Expect = 3e-08
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQID--TSIRECQALILAPTRELAQQIQKVVIAL 424
+L+GRDV+A A++G+GKTA F I + +++ + +ALIL+PTRELA Q K + L
Sbjct: 73 ILEGRDVVAMAKTGSGKTACFLIPLFEKLQRREPTKGARALILSPTRELAVQTYKFIKEL 132
Query: 425 GDHLNAKCHACIGGTNV 475
G + K +GG ++
Sbjct: 133 GRFMELKSILVLGGDSM 149
>UniRef50_Q22MC1 Cluster: Type III restriction enzyme, res subunit
family protein; n=1; Tetrahymena thermophila SB210|Rep:
Type III restriction enzyme, res subunit family protein
- Tetrahymena thermophila SB210
Length = 440
Score = 60.5 bits (140), Expect = 3e-08
Identities = 31/83 (37%), Positives = 47/83 (56%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
LL+ + VIA A++G+GKTATF+ ILQ + A++L RELA QI + G
Sbjct: 36 LLRKQHVIANAETGSGKTATFAFPILQDLAKDPFGVFAIVLTANRELAMQISEQFTIFGS 95
Query: 431 HLNAKCHACIGGTNVREDIRQLE 499
LN + +GG + + + +LE
Sbjct: 96 SLNLRVSTLVGGVDFNKQLSELE 118
Score = 36.3 bits (80), Expect = 0.59
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRAL---HANTIKLFVLDEADEM 612
++VVGTPGR DMI + + + +K VLDEAD +
Sbjct: 122 HIVVGTPGRTLDMIDKSPVLKEYIENVKYLVLDEADRL 159
>UniRef50_Q09719 Cluster: ATP-dependent RNA helicase dbp10; n=2;
Schizosaccharomyces pombe|Rep: ATP-dependent RNA
helicase dbp10 - Schizosaccharomyces pombe (Fission
yeast)
Length = 848
Score = 60.5 bits (140), Expect = 3e-08
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSI--RECQALILAPTRELAQQIQKVVIAL 424
LL+GRDV+ A++G+GKTA F I +++ + +++ +ALIL+P RELA Q KVV
Sbjct: 103 LLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDF 162
Query: 425 GDHLNAKCHACIGGTNVREDIRQL 496
+ + A +GG ++ E L
Sbjct: 163 SKGTDLRSVAIVGGVSLEEQFSLL 186
>UniRef50_UPI00015B5D7B Cluster: PREDICTED: similar to LD28101p;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
LD28101p - Nasonia vitripennis
Length = 782
Score = 60.1 bits (139), Expect = 4e-08
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVVIALG 427
L GRDV+A A++G+GKTA F I + +++ T + +ALIL+PTRELA Q Q+ + +G
Sbjct: 73 LDGRDVVAMARTGSGKTACFLIPMFEKLKTRQAKTGARALILSPTRELALQTQRFIKEIG 132
Query: 428 DHLNAKCHACIGGTNV 475
K +GG ++
Sbjct: 133 RFTGLKSSVILGGDSM 148
>UniRef50_UPI00005A557C Cluster: PREDICTED: similar to eukaryotic
translation initiation factor 4A, isoform 1; n=1; Canis
lupus familiaris|Rep: PREDICTED: similar to eukaryotic
translation initiation factor 4A, isoform 1 - Canis
familiaris
Length = 430
Score = 60.1 bits (139), Expect = 4e-08
Identities = 31/47 (65%), Positives = 37/47 (78%)
Frame = +2
Query: 272 IAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 412
I+ + SGTG TATF+ISILQQID ++ +A LAPTR LAQQIQKV
Sbjct: 182 ISCSPSGTGNTATFAISILQQIDLDLKATKASGLAPTRVLAQQIQKV 228
>UniRef50_Q8EZ11 Cluster: ATP-dependent RNA helicase; n=4;
Leptospira|Rep: ATP-dependent RNA helicase - Leptospira
interrogans
Length = 521
Score = 60.1 bits (139), Expect = 4e-08
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+L+G+D+I AQ+GTGKTA F+I ++ ++ + QALIL PTREL Q+ + L
Sbjct: 43 ILKGKDIIGHAQTGTGKTAAFAIPTIELLEVESKHLQALILCPTRELVIQVSEQFRKLIK 102
Query: 431 HL-NAKCHACIGGTNVREDIRQL 496
+ N + GG + +R L
Sbjct: 103 YKGNFEVVPIYGGQEIERQLRAL 125
Score = 45.6 bits (103), Expect = 0.001
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+V+ TPGR+ D + R ++H + IK+ VLDEADEML
Sbjct: 131 IVIATPGRMMDHMRRGSIHLDEIKIVVLDEADEML 165
>UniRef50_Q7MT81 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=9; Bacteroidales|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Porphyromonas
gingivalis (Bacteroides gingivalis)
Length = 427
Score = 60.1 bits (139), Expect = 4e-08
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIA 421
+L+GRDVIA AQ+GTGKTA + + IL ++ + + A+I+APTRELAQQI + V
Sbjct: 35 ILEGRDVIACAQTGTGKTAAYLLPILDRLSAGEFASDVVNAVIMAPTRELAQQIDQQVEG 94
Query: 422 LGDHLNAKCHACIGGTN 472
+ A GGT+
Sbjct: 95 FSYFMPVSAVAIYGGTD 111
Score = 33.1 bits (72), Expect = 5.5
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+V+ TPGR+ + + + + FVLDEAD ML
Sbjct: 128 IVIATPGRLISHLNLGSADLSHVSYFVLDEADRML 162
>UniRef50_Q6APU7 Cluster: Related to ATP-dependent RNA helicase;
n=1; Desulfotalea psychrophila|Rep: Related to
ATP-dependent RNA helicase - Desulfotalea psychrophila
Length = 498
Score = 60.1 bits (139), Expect = 4e-08
Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Frame = +2
Query: 221 FCNPATRNX--ALLQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILA 376
+C P A+L G+D+I +A +GTGKTA F + ++ ++ R +ALILA
Sbjct: 116 YCTPIQEQSLEAVLAGKDLIGKANTGTGKTAVFLVGVMARLLADKKGGLGKRTPRALILA 175
Query: 377 PTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 505
PTREL QI K LG + A GG + + L+ G
Sbjct: 176 PTRELVMQIVKDAKKLGRYTGVNADAVYGGAEYEKQMELLKRG 218
Score = 35.9 bits (79), Expect = 0.78
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+VV TPGR+ D +R ++ + + V+DEAD ML
Sbjct: 222 IVVATPGRLIDFHNKRLVNFDNCQTLVIDEADRML 256
>UniRef50_Q2LY23 Cluster: Superfamily II DNA and RNA helicases; n=2;
Bacteria|Rep: Superfamily II DNA and RNA helicases -
Syntrophus aciditrophicus (strain SB)
Length = 572
Score = 60.1 bits (139), Expect = 4e-08
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Frame = +2
Query: 266 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 442
D++ AQ+GTGKTA F I ++Q DT ++ QAL+L PTREL Q+ + +G ++
Sbjct: 42 DLVGLAQTGTGKTAAFGIPLIQLTDTRLKRTQALVLCPTRELCVQVAGDLNLMGRYVQKL 101
Query: 443 KCHACIGGTNVREDIRQLESG 505
K GG ++ +L G
Sbjct: 102 KIVPVYGGASIVSQTEELRKG 122
Score = 43.2 bits (97), Expect = 0.005
Identities = 20/35 (57%), Positives = 26/35 (74%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
VVV TPGR++D+I R A+ + + VLDEADEML
Sbjct: 125 VVVATPGRLHDLIRRGAVDLSGVSWVVLDEADEML 159
>UniRef50_Q14NT1 Cluster: Putative atp-dependent rna helicase
protein; n=1; Spiroplasma citri|Rep: Putative
atp-dependent rna helicase protein - Spiroplasma citri
Length = 443
Score = 60.1 bits (139), Expect = 4e-08
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
L +D+I ++ +GTGKT F + ILQ ++T +++ QA+IL PT ELA QI + V +
Sbjct: 36 LNSQDIIGKSHTGTGKTVAFIVPILQNLNTHLKQPQAIILCPTHELASQIIEQVRKFATY 95
Query: 434 LNAKCHACI-GGTNVREDIRQL 496
L I GG++++ I L
Sbjct: 96 LEGVNATLICGGSHIQRQIYAL 117
Score = 48.0 bits (109), Expect = 2e-04
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++VGTPGR+ D I R+ L + IK VLDEADEML
Sbjct: 122 IIVGTPGRIADHINRKTLRLDKIKTIVLDEADEML 156
>UniRef50_A6Q8Y9 Cluster: ATP-dependent RNA helicase, DEAD-box
family; n=6; Bacteria|Rep: ATP-dependent RNA helicase,
DEAD-box family - Sulfurovum sp. (strain NBC37-1)
Length = 492
Score = 60.1 bits (139), Expect = 4e-08
Identities = 30/83 (36%), Positives = 46/83 (55%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+L+G D+IAQAQ+GTGKTA F + I+ + + L++ PTRELA Q+ + G
Sbjct: 35 VLEGHDMIAQAQTGTGKTAAFGLPIMSMMKAD-GSVEGLVIVPTRELAMQVSDELFRFGK 93
Query: 431 HLNAKCHACIGGTNVREDIRQLE 499
K GGT + I +++
Sbjct: 94 LSGLKTATVYGGTAYGKQIERIK 116
Score = 33.9 bits (74), Expect = 3.1
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+VV TPGR+ D++ + N VLDEADEML
Sbjct: 120 IVVATPGRLQDLLMSGKIKLNP-HFVVLDEADEML 153
>UniRef50_A4C6L9 Cluster: ATP-dependent RNA helicase, DEAD box
family protein; n=1; Pseudoalteromonas tunicata D2|Rep:
ATP-dependent RNA helicase, DEAD box family protein -
Pseudoalteromonas tunicata D2
Length = 416
Score = 60.1 bits (139), Expect = 4e-08
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQ---IDTS---IRECQALILAPTRELAQQIQK 409
A+L G D A A +GTGKTA + + LQ+ +D S +R +AL L PTRELA Q+++
Sbjct: 35 AVLSGTDTYAIAPTGTGKTAAYLLPTLQELSRVDNSAEQVRPVRALFLVPTRELAVQVEE 94
Query: 410 VVIALGDHLNAKCHACIGGTNVREDIRQLESG 505
+ G LN + + GG + + + + G
Sbjct: 95 SIAKYGKGLNLRTISVFGGVRIPSQVNRFKRG 126
Score = 36.3 bits (80), Expect = 0.59
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
+VV TP R+ D++ +A +K FV+DEAD ++S
Sbjct: 129 IVVATPRRLVDLLKVKAFSLEQVKHFVMDEADRLVS 164
>UniRef50_Q5D9C4 Cluster: SJCHGC09528 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC09528 protein - Schistosoma
japonicum (Blood fluke)
Length = 454
Score = 60.1 bits (139), Expect = 4e-08
Identities = 28/51 (54%), Positives = 38/51 (74%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 403
+L+G DV+A A++G+GKTA F I ILQ + T ++ ALI+ PTRELA QI
Sbjct: 35 ILEGNDVVACAKTGSGKTAAFLIPILQSLMTELKPLYALIITPTRELAHQI 85
>UniRef50_Q17BP5 Cluster: DEAD box ATP-dependent RNA helicase; n=2;
Culicidae|Rep: DEAD box ATP-dependent RNA helicase -
Aedes aegypti (Yellowfever mosquito)
Length = 1061
Score = 60.1 bits (139), Expect = 4e-08
Identities = 30/82 (36%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Frame = +2
Query: 260 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 436
G D++ QA+SGTGKT F++ I + + + Q+L + PTRE+A QI+ V+ +G +
Sbjct: 59 GLDLLVQAKSGTGKTLVFTVLITENHNPDVMFPQSLTVVPTREIAVQIEDVLNRIGYSVP 118
Query: 437 NAKCHACIGGTNVREDIRQLES 502
N + + IGG ++ +D + L+S
Sbjct: 119 NFRAKSFIGGLDISQDRKNLQS 140
Score = 43.6 bits (98), Expect = 0.004
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +1
Query: 505 CYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
C VVGTPGR+ +I L+ + IK+ VLDEAD +++
Sbjct: 141 CSAVVGTPGRINHLIKSNVLNTSQIKILVLDEADSLIT 178
Score = 34.7 bits (76), Expect = 1.8
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +3
Query: 114 PGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIXPCSK 260
P T D ++D ++ F M L E +LRG+ F PS IQ RAI P +K
Sbjct: 11 PRTADVEFDLSLQ-FSKMFLSEPVLRGLTRNNFTHPSPIQARAI-PLAK 57
>UniRef50_A4RHM4 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 617
Score = 60.1 bits (139), Expect = 4e-08
Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 17/98 (17%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRE--------------CQALILAPT 382
L+G+D++AQA++GTGKT F I ++Q+I D S++E +A+I++PT
Sbjct: 13 LKGKDLVAQAKTGTGKTLAFLIPVIQKILDADPSLKEVSRGRPRRFAQRQSIKAIIISPT 72
Query: 383 RELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL 496
RELA+QI K L +GGT RE +R++
Sbjct: 73 RELAEQIGKEATRLCQRNGVTVQTAVGGTGKRESLRRI 110
Score = 40.7 bits (91), Expect = 0.027
Identities = 18/41 (43%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Frame = +1
Query: 499 EWCYVVVGTPGRVYDMITRR--ALHANTIKLFVLDEADEML 615
E C+++VGTPGR+ D+++ + A+ ++ VLDEAD ML
Sbjct: 113 EGCHLLVGTPGRLNDLLSDELSGIDASNVQALVLDEADRML 153
>UniRef50_Q9LUW5 Cluster: DEAD-box ATP-dependent RNA helicase 53;
n=14; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 53 - Arabidopsis thaliana (Mouse-ear cress)
Length = 616
Score = 60.1 bits (139), Expect = 4e-08
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVV 415
++GRD+I +A++GTGKT F I I+ +I R L+LAPTRELA+Q++K
Sbjct: 139 MEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEF 198
Query: 416 IALGDHLNAKCHACIGGTNVREDIRQLESGV 508
L+ C GGT + + +RQL+ GV
Sbjct: 199 RESAPSLDTIC--LYGGTPIGQQMRQLDYGV 227
Score = 45.2 bits (102), Expect = 0.001
Identities = 20/35 (57%), Positives = 27/35 (77%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
V VGTPGRV D++ R AL+ + ++ VLDEAD+ML
Sbjct: 229 VAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQML 263
>UniRef50_Q9ZRZ8 Cluster: DEAD-box ATP-dependent RNA helicase 28;
n=5; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 28 - Arabidopsis thaliana (Mouse-ear cress)
Length = 789
Score = 60.1 bits (139), Expect = 4e-08
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIAL 424
L GRD+ A A +G+GKTA F++ L+++ + + LIL PTRELA QI ++ L
Sbjct: 202 LTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNL 261
Query: 425 GDHLNAKCHACIGGTNVRE 481
+ KC +GG +VRE
Sbjct: 262 AQFTDIKCGLIVGGLSVRE 280
>UniRef50_Q6BML1 Cluster: Pre-mRNA-processing ATP-dependent RNA
helicase PRP5; n=4; Saccharomycetales|Rep:
Pre-mRNA-processing ATP-dependent RNA helicase PRP5 -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 913
Score = 60.1 bits (139), Expect = 4e-08
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTS--IRECQA---LILAPTRELAQQIQKV 412
A++ GRD+I A++G+GKT +F + +L+ I +R LI+ PTRELA QI K
Sbjct: 350 AIMSGRDIIGVAKTGSGKTLSFVLPLLRHIQDQPPLRRGDGPIGLIMTPTRELALQIHKE 409
Query: 413 VIALGDHLNAKCHACIGGTNVREDIRQLESG 505
+ LN C GG+++ I +L+ G
Sbjct: 410 LNHFTKKLNISSCCCFGGSSIESQIAELKKG 440
Score = 33.5 bits (73), Expect = 4.2
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +1
Query: 511 VVVGTPGRVYDMI---TRRALHANTIKLFVLDEADEM 612
++VGTPGR+ D++ + R + + VLDEAD M
Sbjct: 443 IIVGTPGRIIDLLAANSGRVTNLQRVTYLVLDEADRM 479
>UniRef50_Q4WRP2 Cluster: ATP-dependent RNA helicase mss116,
mitochondrial precursor; n=7; Trichocomaceae|Rep:
ATP-dependent RNA helicase mss116, mitochondrial
precursor - Aspergillus fumigatus (Sartorya fumigata)
Length = 655
Score = 60.1 bits (139), Expect = 4e-08
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 14/97 (14%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--DTSIR------------ECQALILAPTRE 388
+LQG DV+AQA++GTGKT F + Q I D S++ + +A+I++PTRE
Sbjct: 119 ILQGDDVLAQAKTGTGKTLAFLTPVFQNIMKDPSLKGLNWRRSQASSSDIRAIIISPTRE 178
Query: 389 LAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 499
LA+QI L H +GGT RE +R+++
Sbjct: 179 LAEQIAVEARRLAAHSGVIVQTAVGGTQKREGLRRIQ 215
Score = 37.1 bits (82), Expect = 0.34
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Frame = +1
Query: 499 EWCYVVVGTPGRVYDMI--TRRALHANTIKLFVLDEADEML 615
E C+V++GTPGR+ D++ + + A + VLDEAD +L
Sbjct: 217 EGCHVLIGTPGRLKDVLSDSYNGVTAPNLSTLVLDEADRLL 257
>UniRef50_Q9K7L3 Cluster: RNA helicase; n=2; Bacillus|Rep: RNA
helicase - Bacillus halodurans
Length = 389
Score = 59.7 bits (138), Expect = 6e-08
Identities = 30/82 (36%), Positives = 49/82 (59%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
L G+++I +Q+GTGKT + + +L + + + QALILAPT+ELA QI +V L
Sbjct: 37 LDGQNLIVHSQTGTGKTLAYLLPMLTKTEELPEQTQALILAPTQELAMQIVEVAKQLTAT 96
Query: 434 LNAKCHACIGGTNVREDIRQLE 499
+ IGG N++ + +L+
Sbjct: 97 TSITVLPLIGGANIKRQVEKLK 118
Score = 39.1 bits (87), Expect = 0.084
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+V VGTPGR+ +++ + L +K+ V+DEAD M+
Sbjct: 123 HVAVGTPGRILELMEMKKLKVPHVKMIVVDEADRMM 158
>UniRef50_Q6D2K3 Cluster: ATP-independent RNA helicase; n=6;
Proteobacteria|Rep: ATP-independent RNA helicase -
Erwinia carotovora subsp. atroseptica (Pectobacterium
atrosepticum)
Length = 460
Score = 59.7 bits (138), Expect = 6e-08
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 427
A+L G DV A+A++G+GKTA F I +L +I S QAL+L PTRELA Q+ K + L
Sbjct: 37 AVLSGADVRAKAKTGSGKTAAFGIGLLDRIVVSDFTTQALVLCPTRELADQVSKELRRLA 96
Query: 428 DHL-NAKCHACIGGTNVREDIRQL 496
N K GG + + + L
Sbjct: 97 RFAQNIKILTLCGGQPMGQQLDSL 120
Score = 45.2 bits (102), Expect = 0.001
Identities = 18/36 (50%), Positives = 29/36 (80%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++VVGTPGR+ D + +++L +++K+ VLDEAD ML
Sbjct: 125 HIVVGTPGRIQDHLRKQSLALDSLKVLVLDEADRML 160
>UniRef50_Q5FUQ9 Cluster: ATP-dependent RNA helicase; n=11; cellular
organisms|Rep: ATP-dependent RNA helicase -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 793
Score = 59.7 bits (138), Expect = 6e-08
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTS---IRECQALILAPTRELAQQIQKVVIA 421
+L+G DV+ AQ+GTGKTA+F++ +LQ++ S R ++LIL PTRELA Q+ +
Sbjct: 325 VLKGHDVLGVAQTGTGKTASFTLPMLQKLAGSRARARMPRSLILEPTRELALQVAENFKL 384
Query: 422 LGDHLNAKCHACIGGTNVREDIRQLESGV 508
G +L IGG ++ E L GV
Sbjct: 385 YGKYLRLTHALLIGGESMAEQRDVLNRGV 413
Score = 33.5 bits (73), Expect = 4.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
V++ TPGR+ D+ R L V+DEAD ML
Sbjct: 415 VLIATPGRLLDLFGRGGLLLTQTSTLVIDEADRML 449
>UniRef50_Q0BSI7 Cluster: ATP-dependent RNA helicase; n=12;
Alphaproteobacteria|Rep: ATP-dependent RNA helicase -
Granulobacter bethesdensis (strain ATCC BAA-1260 /
CGDNIH1)
Length = 763
Score = 59.7 bits (138), Expect = 6e-08
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSI---SILQQIDTSIRECQALILAPTRELAQQIQKVVIA 421
+L GRDV+ AQ+GTGKTA+F++ IL R ++LIL PTRELA Q+ + +
Sbjct: 257 VLMGRDVLGCAQTGTGKTASFTLPMMDILSDRRARARMPRSLILEPTRELALQVAENFVK 316
Query: 422 LGDHLNAKCHACIGGTNVREDIRQLESGV 508
G +L IGG ++ + L GV
Sbjct: 317 YGQYLKLNHALLIGGESMNDQRDVLSKGV 345
Score = 35.9 bits (79), Expect = 0.78
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
V++ TPGR+ D+ R L ++ V+DEAD ML
Sbjct: 347 VLIATPGRLIDLFDRGGLLLTDTRILVIDEADRML 381
>UniRef50_A4RYJ1 Cluster: Predicted protein; n=3; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 407
Score = 59.7 bits (138), Expect = 6e-08
Identities = 39/91 (42%), Positives = 50/91 (54%), Gaps = 10/91 (10%)
Frame = +2
Query: 260 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAL----- 424
G DVIAQA+SGTGKT TF + L+++D R QAL LAPTRE A Q + + +
Sbjct: 74 GCDVIAQAKSGTGKTMTFVVIALERVDAGRRRTQALALAPTRECAVQTHECFVEMIEKFK 133
Query: 425 ---GDHLNAKCHAC--IGGTNVREDIRQLES 502
GD C +GG V+ED +L S
Sbjct: 134 DMDGD-ARGGIETCLLVGGLPVKEDRARLAS 163
Score = 39.1 bits (87), Expect = 0.084
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
+VVVGTPGR M+ ++ + +L +LDEAD +LS
Sbjct: 166 HVVVGTPGRTRQMLEEGSMACDGARLLILDEADALLS 202
>UniRef50_Q5CIF9 Cluster: DEAD-box RNA helicase; n=2;
Cryptosporidium|Rep: DEAD-box RNA helicase -
Cryptosporidium hominis
Length = 518
Score = 59.7 bits (138), Expect = 6e-08
Identities = 29/54 (53%), Positives = 41/54 (75%)
Frame = +2
Query: 266 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 427
++IAQA +G+GKTATF++++L ++DT I Q + L PTRELA+Q Q VV LG
Sbjct: 152 NLIAQAHNGSGKTATFALAMLGKVDTRIIHPQCMCLCPTRELARQNQDVVNELG 205
Score = 38.7 bits (86), Expect = 0.11
Identities = 14/35 (40%), Positives = 25/35 (71%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+++ TPG++ D + +R+ +KL V+DEADEM+
Sbjct: 230 IIICTPGKMQDFLKKRSFPTEFMKLMVIDEADEMI 264
Score = 36.3 bits (80), Expect = 0.59
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
+ D+NL +LL+GIY GF +PS IQ A+
Sbjct: 114 WSDLNLSPDLLKGIYNKGFNRPSKIQAAAL 143
>UniRef50_Q54TF8 Cluster: DEAD-box RNA helicase; n=2; Dictyostelium
discoideum|Rep: DEAD-box RNA helicase - Dictyostelium
discoideum AX4
Length = 465
Score = 59.7 bits (138), Expect = 6e-08
Identities = 28/60 (46%), Positives = 42/60 (70%)
Frame = +2
Query: 266 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAK 445
++IAQ+QSGTGKTA F++ +L +D SI QA+ ++PT+ELA Q +V+ +G N K
Sbjct: 110 NLIAQSQSGTGKTAAFTLGMLNCVDPSINAPQAICISPTKELALQTFEVISKIGQFSNIK 169
Score = 46.0 bits (104), Expect = 7e-04
Identities = 18/33 (54%), Positives = 27/33 (81%)
Frame = +3
Query: 147 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
V+TF+++ LK ELL+G+YA G+ KPS IQ+ A+
Sbjct: 69 VKTFEELGLKPELLKGVYAMGYNKPSKIQEAAL 101
Score = 36.7 bits (81), Expect = 0.45
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEAD 606
V++GTPG++ + + ++ L +K+ VLDEAD
Sbjct: 187 VIIGTPGKILENVIKKQLSVKFLKMVVLDEAD 218
>UniRef50_Q4QJG6 Cluster: ATP-dependent RNA helicase, putative; n=3;
Leishmania|Rep: ATP-dependent RNA helicase, putative -
Leishmania major
Length = 625
Score = 59.7 bits (138), Expect = 6e-08
Identities = 32/85 (37%), Positives = 46/85 (54%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 427
A+L GR V+ A +G+GKTA F++ ILQ + AL+L P+RELA QI IA G
Sbjct: 35 AILAGRHVVGGAATGSGKTAAFALPILQTLAADAYGVFALVLTPSRELAYQIIDQFIAFG 94
Query: 428 DHLNAKCHACIGGTNVREDIRQLES 502
L + +GG + L++
Sbjct: 95 APLRVRTMLAVGGVPTETQVDALKA 119
>UniRef50_Q4P7Y2 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 568
Score = 59.7 bits (138), Expect = 6e-08
Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQID--------TSIRECQALILAPTRELAQQIQK 409
LQ RD+I A++G+GKTA+F I +L I T QALIL PTRELAQQI+
Sbjct: 302 LQNRDLIGIAETGSGKTASFLIPLLAYISKLPKLDEHTKALGPQALILVPTRELAQQIET 361
Query: 410 VVIALGDHLNAKCHACIGGTNVREDIRQLESG 505
L +C + +GG ++ + L G
Sbjct: 362 ETNKFAGRLGLRCVSIVGGRDMNDQAYALRDG 393
Score = 34.3 bits (75), Expect = 2.4
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+V+ TPGR+ D I R L + V+DEAD+M+
Sbjct: 396 IVIATPGRLKDCIERHVLVLSQCTYVVMDEADKMV 430
>UniRef50_P20447 Cluster: ATP-dependent RNA helicase DBP3; n=20;
Ascomycota|Rep: ATP-dependent RNA helicase DBP3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 523
Score = 59.7 bits (138), Expect = 6e-08
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIAL 424
LL G+DV+ A++G+GKT F + + + D R Q L+++PTRELA QI +I L
Sbjct: 146 LLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELASQIYDNLIVL 205
Query: 425 GDHLNAKCHACIGGTNVREDIRQLE 499
D + +C GG E QL+
Sbjct: 206 TDKVGMQCCCVYGGVPKDEQRIQLK 230
Score = 37.9 bits (84), Expect = 0.19
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
VVV TPGR+ D++ ++ + + VLDEAD ML +
Sbjct: 234 VVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEK 270
>UniRef50_UPI0000DB7667 Cluster: PREDICTED: similar to CG32344-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to
CG32344-PA - Apis mellifera
Length = 743
Score = 59.3 bits (137), Expect = 7e-08
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE----CQALILAPTRELAQQIQKVVIA 421
L+GRD++A A++G+GKTA F I + +++ IR+ +ALIL+PTRELA Q K +
Sbjct: 71 LEGRDIVAMARTGSGKTACFLIPLFEKL--KIRQAKVGARALILSPTRELALQTLKFIKE 128
Query: 422 LGDHLNAKCHACIGGTNV 475
LG K +GG N+
Sbjct: 129 LGRFTGLKATIILGGDNM 146
>UniRef50_Q31EF0 Cluster: ATP-dependent RNA helicase; n=1;
Thiomicrospira crunogena XCL-2|Rep: ATP-dependent RNA
helicase - Thiomicrospira crunogena (strain XCL-2)
Length = 401
Score = 59.3 bits (137), Expect = 7e-08
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIA 421
+L +DV+A A +GTGKTA F + LQ + R+ + LILAPTRELA QI KVV
Sbjct: 35 MLLSKDVLAGAATGTGKTAAFVLPALQFLLDDPRPSRKPRVLILAPTRELAFQIHKVVKQ 94
Query: 422 LGDHLNAKCHACIGGTNVREDIRQLESGV 508
LG H + + GG + + L+S +
Sbjct: 95 LGAHCPFESNVVTGGFASDKQLEILQSKI 123
Score = 35.9 bits (79), Expect = 0.78
Identities = 13/35 (37%), Positives = 26/35 (74%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++V TPGR+ +++++ + + I+L ++DEAD ML
Sbjct: 125 ILVATPGRLLNIMSKEFIDLSDIELLIIDEADRML 159
>UniRef50_A4B385 Cluster: ATP-dependent RNA helicase, DEAD box
family protein; n=2; Proteobacteria|Rep: ATP-dependent
RNA helicase, DEAD box family protein - Alteromonas
macleodii 'Deep ecotype'
Length = 441
Score = 59.3 bits (137), Expect = 7e-08
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSIS----ILQQIDTSIRECQALILAPTRELAQQIQKVVIA 421
+QG+D+IA +++G+GKT F + ++ Q S ++ +ALILAPTRELA+Q+ +
Sbjct: 36 IQGKDIIASSKTGSGKTFAFLVPAINRLMAQKALSRQDPRALILAPTRELAKQVFIEAKS 95
Query: 422 LGDHLNAKCHACIGGTNVREDIRQL 496
+ LN C +GG N + ++ L
Sbjct: 96 MCTGLNLTCSLIVGGENYNDQVKAL 120
Score = 39.1 bits (87), Expect = 0.084
Identities = 15/36 (41%), Positives = 26/36 (72%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+++VGT GRV D + ++++ N ++L + DEAD ML
Sbjct: 125 HIIVGTAGRVADHLLDKSVYLNGLELLIFDEADRML 160
>UniRef50_A1VA48 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Deltaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Desulfovibrio vulgaris subsp. vulgaris
(strain DP4)
Length = 577
Score = 59.3 bits (137), Expect = 7e-08
Identities = 29/85 (34%), Positives = 47/85 (55%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
L GRD++ Q+++G+GKT F + +L+++D + QAL+L PTRELA Q++ L +
Sbjct: 71 LFDGRDLMVQSRTGSGKTGAFLLPLLERLDPAEASTQALVLVPTRELALQVEHEARTLFE 130
Query: 431 HLNAKCHACIGGTNVREDIRQLESG 505
+ A GG + L G
Sbjct: 131 GTGLRVAAVYGGVGYGKQNDALREG 155
Score = 43.2 bits (97), Expect = 0.005
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +1
Query: 499 EWCYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
E + VVGTPGRV D + RR + + ++ DEAD MLS
Sbjct: 154 EGAHFVVGTPGRVLDHLLRRTMQLDRLRALTFDEADRMLS 193
>UniRef50_Q4Q2Z6 Cluster: ATP-dependent RNA helicase, putative; n=7;
Trypanosomatidae|Rep: ATP-dependent RNA helicase,
putative - Leishmania major
Length = 803
Score = 59.3 bits (137), Expect = 7e-08
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIAL 424
+LQG DV+A A++G+GKTA F I +L + I + L+L+PTREL+ QI + AL
Sbjct: 56 MLQGNDVVAMARTGSGKTAAFLIPMLNTLKAHAKIVGIRGLVLSPTRELSLQILRNGFAL 115
Query: 425 GDHLNAKCHACIGGTNVREDIRQLES 502
L+ + A +GG ++ + L S
Sbjct: 116 NKFLDLRFAALVGGDSMDQQFELLAS 141
Score = 37.1 bits (82), Expect = 0.34
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 612
VVV TPGR+ ++ +LH +++ VLDEAD +
Sbjct: 145 VVVATPGRLLHIMEEASLHLTSVRCLVLDEADRL 178
>UniRef50_P54475 Cluster: Probable ATP-dependent RNA helicase yqfR;
n=12; Bacillaceae|Rep: Probable ATP-dependent RNA
helicase yqfR - Bacillus subtilis
Length = 438
Score = 59.3 bits (137), Expect = 7e-08
Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 5/89 (5%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAL- 424
A+L+ VI Q+Q+GTGKT + + +L +ID + Q +I APTRELA QI + + +
Sbjct: 37 AVLKKESVIGQSQTGTGKTHAYLLPLLNKIDPAKDVVQVVITAPTRELANQIYQEALKIT 96
Query: 425 ----GDHLNAKCHACIGGTNVREDIRQLE 499
G + +KC IGGT+ ++ I +L+
Sbjct: 97 QGEEGSQIRSKCF--IGGTDKQKSIDKLK 123
Score = 40.7 bits (91), Expect = 0.027
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++VVGTPGR+ D+I +AL + + V+DEAD ML
Sbjct: 127 HLVVGTPGRIADLIKEQALSVHKAESLVIDEADLML 162
>UniRef50_Q5KPU1 Cluster: ATP-dependent RNA helicase DBP8; n=2;
Filobasidiella neoformans|Rep: ATP-dependent RNA
helicase DBP8 - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 619
Score = 59.3 bits (137), Expect = 7e-08
Identities = 28/84 (33%), Positives = 50/84 (59%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+L GRD I A++G+GKT F++ I+++I A++L PTRELA Q+ + + +G
Sbjct: 186 ILSGRDCIGGAKTGSGKTMAFALPIVERIARDPFGVWAVVLTPTRELAYQLSEQFLVIGK 245
Query: 431 HLNAKCHACIGGTNVREDIRQLES 502
L +GG ++ + ++LE+
Sbjct: 246 PLGLTTATIVGGMDMMKQAQELEA 269
>UniRef50_Q9RKJ0 Cluster: ATP-dependent RNA helicase; n=2;
Streptomyces|Rep: ATP-dependent RNA helicase -
Streptomyces coelicolor
Length = 740
Score = 58.8 bits (136), Expect = 1e-07
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIAL 424
L G+D++ + ++G+GKT +F + L + T + +A+IL PTRELA Q+ +
Sbjct: 96 LAGKDILGRGRTGSGKTLSFGLPTLATLAGGRTEKHKPRAVILTPTRELAMQVADALQPY 155
Query: 425 GDHLNAKCHACIGGTNVREDIRQLESGV 508
GD L K GGT++ I LE GV
Sbjct: 156 GDVLGLKMKVVCGGTSMGNQIYALERGV 183
Score = 38.7 bits (86), Expect = 0.11
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 612
V+V TPGR+ D+I R A +++ VLDEAD+M
Sbjct: 185 VLVATPGRLRDIINRGACSLENVQIAVLDEADQM 218
>UniRef50_Q1FMF9 Cluster: Helicase-like:DbpA, RNA-binding:DEAD/DEAH
box helicase-like; n=1; Clostridium phytofermentans
ISDg|Rep: Helicase-like:DbpA, RNA-binding:DEAD/DEAH box
helicase-like - Clostridium phytofermentans ISDg
Length = 483
Score = 58.8 bits (136), Expect = 1e-07
Identities = 29/71 (40%), Positives = 44/71 (61%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
L+G+D+IA++++G+GKTA F+I I + I QAL+L PTRELA Q++ + +G
Sbjct: 39 LEGKDIIAKSKTGSGKTAAFAIPICESIVWEENLPQALVLEPTRELAYQVKDEIFNVGRM 98
Query: 434 LNAKCHACIGG 466
K GG
Sbjct: 99 KRVKVPVVFGG 109
Score = 38.7 bits (86), Expect = 0.11
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++VVGTPGRV D L + +K ++DEAD ML
Sbjct: 124 HIVVGTPGRVLDHCETGTLKCSNVKYVIIDEADLML 159
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 698,808,052
Number of Sequences: 1657284
Number of extensions: 15351958
Number of successful extensions: 49115
Number of sequences better than 10.0: 500
Number of HSP's better than 10.0 without gapping: 45307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48396
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45221970467
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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