Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0690
(622 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 140 1e-34
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 134 1e-32
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 86 3e-18
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 67 2e-12
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 62 6e-11
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 60 2e-10
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 60 2e-10
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 59 4e-10
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 57 2e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 54 1e-08
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 54 2e-08
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 53 3e-08
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 50 2e-07
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 48 8e-07
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 48 1e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 48 1e-06
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 46 6e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 42 5e-05
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 42 7e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 41 1e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 40 2e-04
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 39 5e-04
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 35 0.011
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 33 0.033
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 1.3
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 1.7
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 2.2
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 2.9
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi... 27 2.9
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 27 2.9
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 3.8
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 26 5.1
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 5.1
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 5.1
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 5.1
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 26 5.1
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po... 25 6.7
SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc... 25 6.7
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 25 8.8
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 140 bits (339), Expect = 1e-34
Identities = 65/86 (75%), Positives = 79/86 (91%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+L RDV+AQAQSGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ALGD
Sbjct: 53 ILGERDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGD 112
Query: 431 HLNAKCHACIGGTNVREDIRQLESGV 508
+N +CHACIGGT VR+D+ L++GV
Sbjct: 113 LMNVECHACIGGTLVRDDMAALQAGV 138
Score = 79.4 bits (187), Expect = 4e-16
Identities = 33/48 (68%), Positives = 43/48 (89%)
Frame = +3
Query: 108 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIXP 251
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAI P
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMP 52
Score = 62.1 bits (144), Expect = 6e-11
Identities = 28/38 (73%), Positives = 34/38 (89%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
+VVVGTPGRV+DMI RRAL + +++FVLDEADEMLSR
Sbjct: 139 HVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSR 176
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 134 bits (323), Expect = 1e-32
Identities = 65/94 (69%), Positives = 79/94 (84%), Gaps = 3/94 (3%)
Frame = +2
Query: 233 ATRNXALLQ---GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 403
A ++ A++Q GRDVIAQAQSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QI
Sbjct: 46 AVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQI 105
Query: 404 QKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 505
Q VV+ALGDH+N +CHACIGGT+V DI++L+ G
Sbjct: 106 QNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYG 139
Score = 58.0 bits (134), Expect = 1e-09
Identities = 29/52 (55%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Frame = +3
Query: 108 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIXPCSK 260
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI K
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICK 57
Score = 50.8 bits (116), Expect = 2e-07
Identities = 22/38 (57%), Positives = 29/38 (76%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
+VV GTPGRV DMI RR L +K+ +LDEADE+L++
Sbjct: 141 HVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQ 178
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 86.2 bits (204), Expect = 3e-18
Identities = 42/85 (49%), Positives = 56/85 (65%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
L GRD++A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q +V LG H
Sbjct: 79 LSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKH 138
Query: 434 LNAKCHACIGGTNVREDIRQLESGV 508
+N K GGT +R+DI +L V
Sbjct: 139 MNVKVMVTTGGTTLRDDIIRLNDTV 163
Score = 42.3 bits (95), Expect = 5e-05
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 60 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 227
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 228 IQQRAI 245
IQ+ +I
Sbjct: 70 IQEESI 75
Score = 39.1 bits (87), Expect = 5e-04
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
++VVGTPGRV D+ + + FV+DEAD++LS
Sbjct: 164 HIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLS 200
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 67.3 bits (157), Expect = 2e-12
Identities = 30/61 (49%), Positives = 46/61 (75%)
Frame = +2
Query: 263 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 442
R++I Q+QSGTGKTA F++++L ++D S+ + QA+ LAP+RELA+QI VV +G +
Sbjct: 154 RNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 213
Query: 443 K 445
K
Sbjct: 214 K 214
Score = 50.0 bits (114), Expect = 3e-07
Identities = 22/37 (59%), Positives = 28/37 (75%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
+V+GTPG V D++ RR L A IK+FVLDEAD ML +
Sbjct: 233 IVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQ 269
Score = 43.6 bits (98), Expect = 2e-05
Identities = 17/33 (51%), Positives = 28/33 (84%)
Frame = +3
Query: 147 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
V++F+++ LK ELL+GIY+ F+KPS IQ++A+
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 62.1 bits (144), Expect = 6e-11
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+L+GR+ I A++G+GKTA F++ I+++ ALIL PTRELA QI + ALG
Sbjct: 41 ILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGA 100
Query: 431 HLNAKCHACIGGTN-VREDI 487
+LN K +GG + +R+ I
Sbjct: 101 NLNLKHALIVGGMDMIRQSI 120
Score = 32.7 bits (71), Expect = 0.044
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHA----NTIKLFVLDEADEMLS 618
+VVV TPGR+ D+I IK V+DEAD +LS
Sbjct: 127 HVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLS 167
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 60.5 bits (140), Expect = 2e-10
Identities = 29/75 (38%), Positives = 48/75 (64%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+L RDVI AQ+G+GKTA F++ ++Q++ + A++LAPTRELA QI + A+G
Sbjct: 80 VLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGG 139
Query: 431 HLNAKCHACIGGTNV 475
+ + +GG ++
Sbjct: 140 SIGVRSVVIVGGMDM 154
Score = 31.5 bits (68), Expect = 0.10
Identities = 20/78 (25%), Positives = 36/78 (46%)
Frame = +3
Query: 12 MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLR 191
M+ S ++ +ED S N + S + D+ ++ +TF ++ + +EL
Sbjct: 1 MAPSEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCE 59
Query: 192 GIYAYGFEKPSAIQQRAI 245
GF+ P+ IQQ AI
Sbjct: 60 ACEKLGFKTPTPIQQEAI 77
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 60.5 bits (140), Expect = 2e-10
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSI--RECQALILAPTRELAQQIQKVVIAL 424
LL+GRDV+ A++G+GKTA F I +++ + +++ +ALIL+P RELA Q KVV
Sbjct: 103 LLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDF 162
Query: 425 GDHLNAKCHACIGGTNVREDIRQL 496
+ + A +GG ++ E L
Sbjct: 163 SKGTDLRSVAIVGGVSLEEQFSLL 186
Score = 31.5 bits (68), Expect = 0.10
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F M L + LLR I+ GF+ P+ IQ++ I
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTI 100
Score = 29.5 bits (63), Expect = 0.41
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 612
+VV TPGR + L ++I+ V DEAD +
Sbjct: 192 IVVATPGRFLHLKVEMKLELSSIEYVVFDEADRL 225
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 59.3 bits (137), Expect = 4e-10
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +2
Query: 260 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 436
G DV+ QA+SG GKTA F +S LQQI+ E L+L TRELA QI+ +L
Sbjct: 88 GTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLP 147
Query: 437 NAKCHACIGGTNVREDI 487
+ + GG N+++D+
Sbjct: 148 DVRTAVFYGGINIKQDM 164
Score = 40.7 bits (91), Expect = 2e-04
Identities = 16/36 (44%), Positives = 26/36 (72%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++VV TPGR+ ++ + L N++K FVLDE D++L
Sbjct: 175 HIVVATPGRLNALVREKILKVNSVKHFVLDECDKLL 210
Score = 32.7 bits (71), Expect = 0.044
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F D LK ELLR I GFE PS +QQ I
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCI 82
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 57.2 bits (132), Expect = 2e-09
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 6/80 (7%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQ------QIDTSIRECQALILAPTRELAQQIQKVV 415
L+G+D++AQA++G+GKTA + I IL+ QID + R AL+L PTRELAQQ+ V+
Sbjct: 49 LEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVL 108
Query: 416 IALGDHLNAKCHACIGGTNV 475
+ L A C I NV
Sbjct: 109 ----EKLTAFCSKHIRFINV 124
Score = 32.7 bits (71), Expect = 0.044
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 150 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
+TF D NL L R I+ FEKP+++Q I
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETI 45
Score = 30.3 bits (65), Expect = 0.23
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
+V+ TP R + L + +K V+DEAD MLS
Sbjct: 143 IVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLS 178
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 54.4 bits (125), Expect = 1e-08
Identities = 28/85 (32%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQID----TSIRECQALILAPTRELAQQIQKVVIA 421
L+GRD++ A++G+GKT F + +++ + TS+ AL+++PTRELA Q + ++
Sbjct: 74 LKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVK 133
Query: 422 LGDHLNAKCHACIGGTNVREDIRQL 496
+G + IGG N +E+ +L
Sbjct: 134 IGRLHSFSAGLIIGGNNYKEEKERL 158
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 54.0 bits (124), Expect = 2e-08
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIAL 424
L G+D++ A +G+GKTA F + IL+++ + + LIL PTRELA Q V +
Sbjct: 294 LLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKI 353
Query: 425 GDHLNAKCHACIGGTNVREDIRQL 496
+ CIGG +++ ++L
Sbjct: 354 ASFTDIMVCLCIGGLSLKLQEQEL 377
Score = 31.9 bits (69), Expect = 0.077
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 153 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
+F MNL +L+G+ GFE P+ IQ + I
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTI 290
Score = 31.9 bits (69), Expect = 0.077
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 511 VVVGTPGRVYD-MITRRALHANTIKLFVLDEADEML 615
+V+ TPGR D M + I++ V+DEAD ML
Sbjct: 383 IVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRML 418
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 53.2 bits (122), Expect = 3e-08
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDT--SIRECQ------ALILAPTRELAQQIQ 406
LLQ +D+I A++G+GKTA F I ++ I + E A++LAPTRELAQQIQ
Sbjct: 283 LLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
Query: 407 KVVIALGDHLNAKCHACIGGTNVREDIRQLESG 505
+ L +C + +GG E Q+ G
Sbjct: 343 VEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQG 375
Score = 35.9 bits (79), Expect = 0.005
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++VV TPGR+ D + RR + V+DEAD ML
Sbjct: 377 HIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRML 412
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 50.4 bits (115), Expect = 2e-07
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Frame = +2
Query: 260 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIALGDH 433
G D+I +A +G+GKT F I IL+ + + QAL++APTRELA QI + +
Sbjct: 159 GFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPS 218
Query: 434 LNAKCHACIGGTNVREDIRQL 496
N + + GG V++ R L
Sbjct: 219 PNIRVMSITGGLAVQKQQRLL 239
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHAN--TIKLFVLDEADEMLSR 621
+VVV TPGR++ +I L N IK VLDEAD +L +
Sbjct: 244 HVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQK 283
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 48.4 bits (110), Expect = 8e-07
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVI 418
LL GRDV+ A++G+GKT F +I +L + R +I++PTRELA QI V
Sbjct: 123 LLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAK 182
Query: 419 ALGDHLNAKCHACIGGTNVREDIRQLESGV 508
L + + IGG N R + +L GV
Sbjct: 183 ELLKYHHQTFGIVIGGANRRAEADKLVKGV 212
Score = 33.1 bits (72), Expect = 0.033
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 147 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIXP 251
+E F D+ L E + + I GFE + IQ+R+I P
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPP 122
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 48.0 bits (109), Expect = 1e-06
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKV 412
A+ GRDVI A++G+GKT F + + + I ++ + A+I+ PTRELA QI +
Sbjct: 451 AITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRE 510
Query: 413 VIALGDHLNAKCHACIGGTNVREDIRQLESG 505
LN + GG +++ I L+ G
Sbjct: 511 CKPFLKLLNIRACCAYGGAPIKDQIADLKRG 541
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 132 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
D + V ++ L + + I + G+EKP++IQ +AI
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAI 449
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 47.6 bits (108), Expect = 1e-06
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIA 421
LL GRDV+ A++G+GKT F I LQ ++ + + L+++PTRELA Q + + +
Sbjct: 199 LLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNS 258
Query: 422 LGDHLNAKCHACIGGTNVREDIR 490
L N K GG E R
Sbjct: 259 LIQGTNLKAVVVYGGAPKSEQAR 281
Score = 39.1 bits (87), Expect = 5e-04
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
V++GTPGR+ D+I ++ + + VLDEAD ML
Sbjct: 288 VIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRML 322
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 45.6 bits (103), Expect = 6e-06
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
Frame = +2
Query: 224 CNPATRNXALLQGRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALILAPT 382
C PA N +D +AQ+G+GKT + + I+Q++ T A+I+APT
Sbjct: 169 CLPALLNT---DDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPT 225
Query: 383 RELAQQIQKVVIALGD----HLNAKCHACIGGTNVREDIRQLESGV 508
REL QQI V L + H C+ IGG + + ++ GV
Sbjct: 226 RELCQQIYNVANKLNNNPLSHWIVSCNV-IGGEKKKSEKARIRKGV 270
Score = 31.1 bits (67), Expect = 0.13
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 511 VVVGTPGRVYDMI-TRRALHANTIKLFVLDEADEML 615
+++GTPGR+ D + AL + ++ VLDE D ++
Sbjct: 272 ILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLM 307
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 42.3 bits (95), Expect = 5e-05
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +2
Query: 263 RDVIAQAQSGTGKTATFSISILQQIDTSI-RECQALILAPTRELAQQIQK 409
RD++A A +G+GKT + ILQ++ + +A+I+APTREL +QI +
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYR 133
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 41.9 bits (94), Expect = 7e-05
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVI 418
+ GRD++ + +G+GKT ++ + + I+ L+LAPTRELA QIQ+
Sbjct: 157 MSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECT 216
Query: 419 ALGDHLNAKCHACIGGTNVREDIRQLESGV 508
G + GG IR L GV
Sbjct: 217 KFGKSSRIRNTCVYGGVPRGPQIRDLIRGV 246
Score = 34.3 bits (75), Expect = 0.014
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+ + TPGR+ DM+ + + VLDEAD ML
Sbjct: 248 ICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRML 282
Score = 28.3 bits (60), Expect = 0.95
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 147 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRA 242
V TF++ +L+ + GFE P+ IQQ+A
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQA 152
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 41.1 bits (92), Expect = 1e-04
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKV 412
L+ +D++ +A +G+GKT + + ++ DT ALI+APTRELA QI V
Sbjct: 36 LKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNV 91
Score = 33.1 bits (72), Expect = 0.033
Identities = 13/35 (37%), Positives = 26/35 (74%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
VV+GTPGR+ +M++ + + +++ +LDEAD ++
Sbjct: 135 VVIGTPGRLNEMLSH--ISSKHLEILILDEADTLI 167
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 40.3 bits (90), Expect = 2e-04
Identities = 36/100 (36%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Frame = +2
Query: 260 GRDVIAQAQSGTGKTATFSISIL--------------QQIDTSIRECQA----LILAPTR 385
GRD++A AQ+G+GKTA F IL Q R +A LILAPTR
Sbjct: 206 GRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTR 265
Query: 386 ELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 505
EL QI + + A GG ++R IRQ++ G
Sbjct: 266 ELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQG 305
Score = 39.1 bits (87), Expect = 5e-04
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +1
Query: 505 CYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
C ++ TPGR+ D+I R + IK VLDEAD ML
Sbjct: 306 CDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRML 342
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 39.1 bits (87), Expect = 5e-04
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +2
Query: 260 GRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQIQKVVIALGDHL 436
G DV A +G+GKT ++ I I+Q + ++ + +++ PTREL Q+ K
Sbjct: 173 GGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGA 232
Query: 437 NAKCHACIGGTNVREDIRQL 496
+ A G ++R + QL
Sbjct: 233 GLQVCAWTGQKSLRHETYQL 252
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 34.7 bits (76), Expect = 0.011
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Frame = +2
Query: 266 DVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQKVVIALGD 430
+ + QA++GTGKT F + + + + + ++IL+PTRELA QI + L
Sbjct: 78 NAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTY 137
Query: 431 HLNAKCHACIGG-TNVRED 484
+ IGG + +RE+
Sbjct: 138 GTGIRVSYAIGGNSKMREE 156
Score = 29.1 bits (62), Expect = 0.54
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 511 VVVGTPGRVYDMITR-RALHANTIKLFVLDEADEML 615
+++ TPGR+ D + R L + + F+LDEAD ++
Sbjct: 166 LLIATPGRLEDHLQNPRILESLSTDSFILDEADRLM 201
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 33.1 bits (72), Expect = 0.033
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +2
Query: 215 KTFCNPATRNXALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELA 394
KT+ + A L G VI + +GK+ + I ILQ + + A + PT+ LA
Sbjct: 311 KTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LEDNQSTAFFVFPTKSLA 369
Query: 395 QQIQKVVI 418
Q +K +I
Sbjct: 370 QDQKKSLI 377
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 120 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 212
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +2
Query: 290 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 406
G G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 322 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSS 423
D+ TNR + SSFD S P+N++G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 97 DLREWTLGHLTPT 135
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPAP27G11.02 |||TPR repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -1
Query: 532 DLECPPPHNTTLQLANIFTDIGATNASMAFSIQVITKS 419
D+E PP LQ+AN+ GA + + + ++ ++
Sbjct: 103 DMESPPVQGIRLQMANLLASAGALHKAWSMYWDILERT 140
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 532 RVYDMITRRALHANTIKLFVLDEADEM 612
++ + + R + A+T K+ +LDEAD M
Sbjct: 106 QIKNFASTRQIFASTFKMIILDEADAM 132
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 436 QVITKSYHHLLNLLGQLSCGSQDQ 365
+++ KSYH+L N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 401 IQKVVIALGDHLNAKCHACIGGTNVRED 484
++ + A+ DHL+ + CIG N+ ED
Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED 161
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -1
Query: 496 QLANIFTDIGAT---NASMAFSIQVITKSYHHLLNLL 395
+L NIFT + N+ FS+ +++++Y H NLL
Sbjct: 598 KLQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 117 QGPFPEVHRNYLDPSMAHFWNPLANL 40
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.8 bits (54), Expect = 5.1
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +3
Query: 126 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKP--SAIQQRAIXPCSKDAMLSLKPSQELE 299
DTDWD +V + D++L+ RGI A G + + Q+ A SK +LK ++
Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQEVAPLVSSKKMNENLKAAKNQS 673
Query: 300 KLLLSLYRFYNKS 338
L+ ++ + S
Sbjct: 674 SESLTSFKGHTDS 686
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 123 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIXPCSKD 263
LDT+W V + NL+ + + I + F PS I + P D
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLND 230
>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -2
Query: 513 HITPLSSWRISSRTLVPPMQAWHLAFK*SPRAITTF*ICWASSL 382
H TP S + LV +H+ F+ SP+ +T + W ++
Sbjct: 87 HFTPSSGFMNDPNGLVYTGGVYHMFFQYSPKTLTAGEVHWGHTV 130
>SPCC16A11.07 |coq10||ubiquinone binding protein
Coq10|Schizosaccharomyces pombe|chr 3|||Manual
Length = 164
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +1
Query: 247 CLAPRTRCYRSSPVRNWKNCYFLYIDSTTNRYK 345
C R CYR+S + +K + + S N Y+
Sbjct: 5 CTLRRLECYRASRLMPYKPSFLFSLISNVNEYE 37
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 568 HEAHDELSYHIHDLECPPPHNTTLQLANIFTDIGATNASM 449
+EA + L HI+ P N + +++ T + ATN M
Sbjct: 300 YEASERLGGHIYTHMVPLSDNEVSEKSSLATTVNATNECM 339
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,813
Number of Sequences: 5004
Number of extensions: 62393
Number of successful extensions: 268
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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