Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0690
(622 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 140 6e-34
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 140 1e-33
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 86 2e-17
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 83 2e-16
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 83 2e-16
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 74 8e-14
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 62 4e-10
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 5e-10
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 58 6e-09
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 6e-09
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 57 1e-08
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 57 1e-08
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 1e-08
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 56 2e-08
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 56 2e-08
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 48 5e-06
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 8e-06
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 47 1e-05
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 45 6e-05
SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 42 4e-04
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 41 0.001
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 36 0.020
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 33 0.14
SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 32 0.33
SB_21584| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 30 1.7
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_34297| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8) 29 4.0
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) 29 4.0
SB_15811| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_55750| Best HMM Match : PWWP (HMM E-Value=6.4e-07) 28 7.0
SB_44173| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_30467| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08) 28 7.0
SB_8812| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 27 9.3
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 140 bits (340), Expect = 6e-34
Identities = 69/97 (71%), Positives = 82/97 (84%), Gaps = 6/97 (6%)
Frame = +2
Query: 236 TRNXALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE------CQALILAPTRELAQ 397
T+N +L RDVIAQAQSGTGKTATF+ISILQ+IDT+ ++ CQAL+LAPTRELAQ
Sbjct: 114 TKNHYVLSARDVIAQAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQ 173
Query: 398 QIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
QIQKVV+ALGD+++ KCHACIGGTNVRED +LE GV
Sbjct: 174 QIQKVVLALGDYMHVKCHACIGGTNVREDRMKLEEGV 210
Score = 85.4 bits (202), Expect = 3e-17
Identities = 37/49 (75%), Positives = 43/49 (87%)
Frame = +3
Query: 117 GTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIXPCSKD 263
G ++WD+VVE+FDDMNLKE LLRGIYAYGFEKPSAIQQRAI PC ++
Sbjct: 52 GKRQSNWDEVVESFDDMNLKEALLRGIYAYGFEKPSAIQQRAIRPCCQE 100
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/41 (73%), Positives = 33/41 (80%)
Frame = +1
Query: 499 EWCYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
E +VVVGTPGRV+DMI R L+ IKLFVLDEADEMLSR
Sbjct: 208 EGVHVVVGTPGRVFDMINRGVLNTRDIKLFVLDEADEMLSR 248
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 140 bits (338), Expect = 1e-33
Identities = 64/85 (75%), Positives = 78/85 (91%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+L+GRDVIAQAQSGTGKTATFSIS+LQ IDT +RE QAL+L+PTRELA QIQKVV+ALGD
Sbjct: 31 ILKGRDVIAQAQSGTGKTATFSISVLQAIDTQLREPQALVLSPTRELANQIQKVVLALGD 90
Query: 431 HLNAKCHACIGGTNVREDIRQLESG 505
+++ +CHACIGGTN+ EDIR+L+ G
Sbjct: 91 YMSVQCHACIGGTNIGEDIRKLDYG 115
Score = 55.2 bits (127), Expect = 4e-08
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
++V GTPGRV+DMI RR L +IK+ VLDEADEML++
Sbjct: 117 HIVSGTPGRVFDMIRRRNLRTRSIKMLVLDEADEMLNK 154
Score = 33.1 bits (72), Expect = 0.19
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = +3
Query: 207 GFEKPSAIQQRAIXPCSK 260
GFEKPSAIQQRAI P K
Sbjct: 16 GFEKPSAIQQRAIKPILK 33
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 86.2 bits (204), Expect = 2e-17
Identities = 37/53 (69%), Positives = 48/53 (90%)
Frame = +2
Query: 347 IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 505
+RE QAL+L+PTRELA QIQKVV+ALGD+++ +CHACIGGTN+ EDIR+L+ G
Sbjct: 1 LREPQALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYG 53
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 82.6 bits (195), Expect = 2e-16
Identities = 37/81 (45%), Positives = 58/81 (71%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
L GRD++A+A++GTGKTA + + +L++ DT+ QAL+L PTRELA Q ++ I LG H
Sbjct: 82 LAGRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQALVLVPTRELALQTSQICIELGKH 141
Query: 434 LNAKCHACIGGTNVREDIRQL 496
+ A+ GGT++++DI +L
Sbjct: 142 MGAQVMVTTGGTSLKDDILRL 162
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/37 (40%), Positives = 27/37 (72%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
+V+V TPGRV D++ ++ + ++ V+DEAD++LS
Sbjct: 174 HVIVATPGRVLDLMKKKLADMSKCQMLVMDEADKLLS 210
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F+D LK ELL GI+ GF+KPS IQ+ +I
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESI 78
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 82.6 bits (195), Expect = 2e-16
Identities = 37/81 (45%), Positives = 58/81 (71%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
L GRD++A+A++GTGKTA + + +L++ DT+ QAL+L PTRELA Q ++ I LG H
Sbjct: 82 LAGRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQALVLVPTRELALQTSQICIELGKH 141
Query: 434 LNAKCHACIGGTNVREDIRQL 496
+ A+ GGT++++DI +L
Sbjct: 142 MGAQVMVTTGGTSLKDDILRL 162
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/37 (40%), Positives = 27/37 (72%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
+V+V TPGRV D++ ++ + ++ V+DEAD++LS
Sbjct: 174 HVIVATPGRVLDLMKKKLADMSKCQMLVMDEADKLLS 210
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F+D LK ELL GI+ GF+KPS IQ+ +I
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESI 78
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 74.1 bits (174), Expect = 8e-14
Identities = 37/82 (45%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Frame = +2
Query: 260 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 439
G D+IAQA+SGTGKT FS+ L+ + T Q +IL PTRE+A Q++ V+ A+G H +
Sbjct: 50 GLDLIAQAKSGTGKTCVFSVIALENVITESNCIQIIILTPTREIAVQVKDVICAIGCHYD 109
Query: 440 A-KCHACIGGTNVREDIRQLES 502
C IGG ++ ED + L+S
Sbjct: 110 GLACKVFIGGISLEEDKKALKS 131
Score = 46.0 bits (104), Expect = 2e-05
Identities = 17/37 (45%), Positives = 29/37 (78%)
Frame = +1
Query: 505 CYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
C++ VGTPGRV +I ++ L ++++F+LDEAD++L
Sbjct: 132 CHIAVGTPGRVKYLIEQKYLKTESVRMFILDEADKLL 168
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F + L LLRG+ GFEKPS IQ +AI
Sbjct: 15 FHSLLLSPTLLRGLNEAGFEKPSPIQLKAI 44
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 62.9 bits (146), Expect = 2e-10
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIAL 424
++ G+DV+A A++G+GKTA F I + +++ T + +ALIL+PTRELA Q QK + L
Sbjct: 315 VMDGKDVVAMARTGSGKTAAFLIPMFEKLQTHTAKVGIRALILSPTRELALQTQKFIKEL 374
Query: 425 GDHLNAKCHACIGGTNV 475
G K +GG +V
Sbjct: 375 GRFTGLKSSVILGGDSV 391
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 514 VVGTPGRVYDMITRRALHANTIKLFVLDEAD 606
VV TPGR ++ L ++++ V DEAD
Sbjct: 391 VVATPGRFLHVVMEMELKLSSVEYVVFDEAD 421
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 62.1 bits (144), Expect = 4e-10
Identities = 31/71 (43%), Positives = 45/71 (63%)
Frame = +2
Query: 263 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 442
+DVI A++G+GKT F++ ILQ + + + ALIL PTRELA QI + ALG +
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNPQRLFALILTPTRELAFQISEQCEALGSGIGV 61
Query: 443 KCHACIGGTNV 475
KC +GG ++
Sbjct: 62 KCAVIVGGIDM 72
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLS 618
++++ TPGR+ D + + T+K V+DEAD +L+
Sbjct: 84 HIIIATPGRLIDHLENTKGFSLRTLKYLVMDEADRILN 121
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 61.7 bits (143), Expect = 5e-10
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQALILAPTRELAQQIQKVV 415
++ GRD++A AQ+G+GKTA + + +L Q ++ R AL +APTRELA+QI
Sbjct: 513 VMAGRDLMACAQTGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRELAKQIYIEA 572
Query: 416 IALGDHLNAKCHACIGGTNVREDIRQLESG 505
DH K C GG +V QLE G
Sbjct: 573 RKFSDHTPIKVCVCYGGVSVPYQASQLERG 602
Score = 44.8 bits (101), Expect = 6e-05
Identities = 17/37 (45%), Positives = 27/37 (72%)
Frame = +1
Query: 505 CYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
C+ +VGTPGR+ D ++R ++ +I+ +LDEAD ML
Sbjct: 603 CHFLVGTPGRLQDFVSREKIYLGSIQHLILDEADRML 639
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 58.0 bits (134), Expect = 6e-09
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +2
Query: 260 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 436
G D+I QA+SG GKTA F ++ LQQ++ + L++ TRELA QI K ++
Sbjct: 84 GMDIICQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMCHTRELAFQIHKEYERFCKYMS 143
Query: 437 NAKCHACIGGTNVREDIRQLES 502
N K GG N+++D + L++
Sbjct: 144 NIKIAVFFGGINIKKDQQTLKT 165
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
++VVGTPGR+ + + L+ K F+LDE D+ML +
Sbjct: 169 HIVVGTPGRILALTREKTLNLKHAKHFILDECDKMLEQ 206
Score = 32.3 bits (70), Expect = 0.33
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F D LK ELLR I GFE PS +Q I
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHECI 78
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 58.0 bits (134), Expect = 6e-09
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +2
Query: 260 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 436
G D+I QA+SG GKTA F ++ LQQ++ + L++ TRELA QI K ++
Sbjct: 84 GMDIICQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMCHTRELAFQIHKEYERFCKYMS 143
Query: 437 NAKCHACIGGTNVREDIRQLES 502
N K GG N+++D + L++
Sbjct: 144 NIKIAVFFGGINIKKDQQTLKT 165
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
++VVGTPGR+ + + L+ K F+LDE D+ML +
Sbjct: 169 HIVVGTPGRILALTREKTLNLKHAKHFILDECDKMLEQ 206
Score = 32.3 bits (70), Expect = 0.33
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F D LK ELLR I GFE PS +Q I
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHECI 78
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 57.2 bits (132), Expect = 1e-08
Identities = 32/82 (39%), Positives = 47/82 (57%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+LQGRD I A++G+GKTA F++ ILQ++ A++L PTRELA QI LG
Sbjct: 41 ILQGRDCIGCAKTGSGKTAAFALPILQKLCDDPYGIFAVVLTPTRELAFQIADQFKVLGR 100
Query: 431 HLNAKCHACIGGTNVREDIRQL 496
+ K +GG ++ + L
Sbjct: 101 PIGLKEAVIVGGLDMMKQALSL 122
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 508 YVVVGTPGRVYDMI-TRRALHANTIKLFVLDEADEML 615
+VV+ TPGR+ D I + L+ I+ VLDEAD +L
Sbjct: 127 HVVIATPGRLADHIKSTDTLNLKKIQFLVLDEADRLL 163
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/56 (48%), Positives = 40/56 (71%)
Frame = +2
Query: 266 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
++IAQ+QSGTGKTA F +++L ++D + Q + L+PT ELA+Q KV A+G H
Sbjct: 144 NMIAQSQSGTGKTAAFVLTMLSRVDATKPYPQVICLSPTYELARQTGKVAEAMGKH 199
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Frame = +1
Query: 490 PTGEWC--YVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLS 618
P G+ C ++++GTPG + D I + + + +FVLDEAD M++
Sbjct: 215 PRGQKCTDHIIIGTPGTLLDWIRKSKCFEPRKVSVFVLDEADIMIA 260
Score = 35.5 bits (78), Expect = 0.035
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3
Query: 150 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
++F+++ L L RG+Y GF KPS IQ+ A+
Sbjct: 103 KSFEELPLSANLRRGVYDMGFNKPSKIQETAL 134
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 56.8 bits (131), Expect = 1e-08
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI------DTSIREC---QALILAPTRELAQQI 403
++ GRDV+A AQ+G+GKTA F + ++ + +S E QA+ +APTRELA QI
Sbjct: 745 VIAGRDVMACAQTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQI 804
Query: 404 QKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 505
+ C GG +V +RQL+SG
Sbjct: 805 YLEARKFAHGTMLRPVVCYGGVSVSHQLRQLQSG 838
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 505 CYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
C ++VGTPGR+ D I + + ++ +LDEAD ML
Sbjct: 839 CNLLVGTPGRLTDFIEKGKVSLKGLQFLILDEADRML 875
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 56.4 bits (130), Expect = 2e-08
Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 9/82 (10%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI---------DTSIRECQALILAPTRELAQQIQ 406
LQ RD+I A++G+GKTA F+I +L I + + + ALILAPTRELAQQI+
Sbjct: 136 LQNRDIIGVAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQIE 195
Query: 407 KVVIALGDHLNAKCHACIGGTN 472
+ ++ G L + + IGG +
Sbjct: 196 EEILKFGRPLGIRTVSVIGGAD 217
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 56.0 bits (129), Expect = 2e-08
Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 4/85 (4%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQ----QIDTSIRECQALILAPTRELAQQIQKVVIA 421
L GRDV+ A++G+GKT F I I++ Q TS+ AL+++PTRELA Q +V++
Sbjct: 85 LSGRDVLGAAKTGSGKTLAFLIPIIETLWRQKWTSMDGLGALVISPTRELAYQTFEVLVK 144
Query: 422 LGDHLNAKCHACIGGTNVREDIRQL 496
+G+ + IGG +++ + +++
Sbjct: 145 IGNKHDLSAGLIIGGKDLKNEQKRI 169
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 52.4 bits (120), Expect = 3e-07
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFS----ISILQQIDTSIRECQ-ALILAPTRELAQQIQKVVI 418
L GRD+I A++G+GKTA F + I+ Q + + + LI APTREL QQI
Sbjct: 552 LSGRDIIGIAKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLICAPTRELCQQIYTEAR 611
Query: 419 ALGDHLNAKCHACIGGTNVREDIRQLESG 505
G N A GG N E + L+ G
Sbjct: 612 RFGKAYNIHVVAVFGGGNKYEQSKALQEG 640
Score = 34.7 bits (76), Expect = 0.061
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 499 EWCYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 612
E +VV TPGR+ D + +A + + + V DEAD M
Sbjct: 639 EGAEIVVATPGRLIDHVKAKATNLHRVTYLVFDEADRM 676
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQ---QIDTSIRE-CQALILAPTRELAQQIQKVVI 418
LL+GRD++ A++G+GKT F + +++ ++ R +I++PTREL+ Q V
Sbjct: 606 LLKGRDLLGAAKTGSGKTLAFLVPVVELLYKLQFKTRNGTGVIIISPTRELSLQTYGVAR 665
Query: 419 ALGDHLNAKCHACIGGTNVREDIRQLESGV 508
L H N +GG N + + +L+ GV
Sbjct: 666 DLLKHHNFTYGIIMGGVNRKAEAERLQKGV 695
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 48.4 bits (110), Expect = 5e-06
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI-DTSI-----RECQALILAPTRELAQQIQKV 412
+ G DVI QA++GTGKT +F++ +++++ D + R + L++APTRELA+Q+
Sbjct: 107 IYDGEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAPKVLVMAPTRELAKQVGNE 166
Query: 413 VIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
L +L C GG + SG+
Sbjct: 167 FENLKSNLEVYC--IYGGMPYEPQENAINSGL 196
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
V+VGTPGR+ D + + L + +K VLDE D ML
Sbjct: 198 VLVGTPGRILDFMRQGTLDLSKLKHVVLDEVDRML 232
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 47.6 bits (108), Expect = 8e-06
Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 19/103 (18%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDT--------------SIRECQ-----ALI 370
ALL RD+I A++G+GKT F I I+Q I+ S E Q ALI
Sbjct: 164 ALLYHRDIIGAAETGSGKTLAFGIPIIQHIEAYKKRKAEQSPSDKESDLESQGYPLLALI 223
Query: 371 LAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 499
+APTRELA Q++ ++ + + K A +GG + R L+
Sbjct: 224 MAPTRELALQVKDHLVKAAKYTSVKVAAIVGGMAAPKQQRLLK 266
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/48 (45%), Positives = 29/48 (60%)
Frame = +2
Query: 365 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
L+L PTRELAQQ+Q+V ++G H + GG IR+LE GV
Sbjct: 136 LVLCPTRELAQQVQEVAYSVGKHCKLRSTCIYGGAPKGPQIRELERGV 183
Score = 34.7 bits (76), Expect = 0.061
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+ + TPGR+ DM+ R + VLDEAD ML
Sbjct: 185 ICIATPGRLIDMLESRKTNLRRCTYLVLDEADRML 219
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 44.8 bits (101), Expect = 6e-05
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQ 400
L G+DV A A +GTGKTA F + IL+++ T + L++ PTRELA Q
Sbjct: 45 LMGKDVCACAATGTGKTAAFMLPILERLLYRPTQSPAIRVLVITPTRELAIQ 96
>SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = +2
Query: 434 LNAKCHACIGGTNVREDIRQLESGV 508
++ KCHACIGGTNVRED +LE GV
Sbjct: 1 MHVKCHACIGGTNVREDRMKLEEGV 25
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +1
Query: 499 EWCYVVVGTPGRVYDMITRRAL 564
E +VVVGTPGRV+DMI R L
Sbjct: 23 EGVHVVVGTPGRVFDMINRGVL 44
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +1
Query: 505 CYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
C+++V TPGR+ DM+ R + ++I+ VLDEAD ML
Sbjct: 976 CHLLVATPGRLVDMMDRGRVGLDSIRFLVLDEADRML 1012
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +2
Query: 263 RDVIAQAQSGTGKTATFSISILQQI 337
RD++A AQ+G+GKTA F I IL +I
Sbjct: 913 RDLMACAQTGSGKTAAFLIPILSRI 937
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F+D++L E LL + G++KP+ +Q+ AI
Sbjct: 877 FEDVDLGEILLHNVGLAGYKKPTPVQKYAI 906
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQI 403
++ GRD+I A++G+GKT +S+ + + T ALIL PTREL QQ+
Sbjct: 106 VMSGRDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTRELMQQV 161
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 132 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
D + +E+F D+NL EL + F+ P+ IQ +++
Sbjct: 66 DCPKPIESFHDLNLPPELSTYLAKKNFQVPTPIQMQSL 103
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/37 (43%), Positives = 26/37 (70%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
+V GTPG++ D IT + + +K F+LDEAD +L++
Sbjct: 138 IVTGTPGKLNDFITTDKISLHQVKFFILDEADGLLAQ 174
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +2
Query: 350 RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 505
R+ A+++ PTRELA QI + N +C GGT + E I +L+ G
Sbjct: 143 RDMIAIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYGGTGISEQIAELKRG 194
Score = 31.1 bits (67), Expect = 0.75
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +1
Query: 511 VVVGTPGRVYDMITR---RALHANTIKLFVLDEADEM 612
++V TPGR+ DM+T R + VLDEAD M
Sbjct: 197 IIVCTPGRMIDMLTANNGRVTNCQRCTYLVLDEADRM 233
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 36.3 bits (80), Expect = 0.020
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTS---------IRECQALILAPTRELAQQI 403
++ VI AQ+G+GKT + ++ ++ ++ +A I+ P RELA QI
Sbjct: 412 IIHRHHVICAAQTGSGKTLAYLAPLVHRLREDEERHGILARLKRPRACIVVPARELATQI 471
Query: 404 QKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
K +L H + IGG + LES V
Sbjct: 472 LKTAKSLCHHARFRSVGLIGGRKQKWMRDDLESPV 506
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
V+V TPGR+ ++I+R+A+ + V+DE D ML
Sbjct: 258 VIVATPGRMVEIISRQAVDLTHVIGCVVDEVDTML 292
>SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 32.7 bits (71), Expect = 0.25
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +3
Query: 27 ERRSEDWPEDSKNGPSKDQGSYD---GPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGI 197
E+ +E+ E +K + D+G GPPG GT D VVE DD K E G
Sbjct: 19 EKTAEEMRELAKKAEACDRGVRAILLGPPGSGKGTQLVSDDLVVELIDDNLTKPECQNGW 78
Query: 198 YAYGFEKPSA 227
GF + A
Sbjct: 79 LLDGFPRTVA 88
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 32.3 bits (70), Expect = 0.33
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 263 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELA-QQIQKVVIALGD 430
+ ++ ++++GTGK+ F +L + R +I+ PTRELA Q + +V LGD
Sbjct: 198 KSLLIKSETGTGKSLVF---LLPSVQDPGRGYGTIIVVPTRELASQMLYEVSRLLGD 251
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+V+GTP R+++++ K V+DE D+ L
Sbjct: 280 IVIGTPKRLWEIVQEHEHLFQRTKRIVIDEVDKTL 314
>SB_21584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1750
Score = 31.5 bits (68), Expect = 0.57
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = -2
Query: 351 RMLVSICCRIDIEKVAVFPVPDWA*AITSRPWSKAXLRVAGLQKVFQNHR-RICLSTILL 175
R+ VS+ C ++ + FP+PD + RPW K +R L VF + + +
Sbjct: 652 RLNVSLSCP-ELSVMLRFPIPDLRPVVERRPWWKQAVRDESLLLVFSAFKFNTVVCSADP 710
Query: 174 *GSCHRRFRQLDP-SRCQVSQGPFPEVHRNYL 82
S RF+Q+D + P P +H + L
Sbjct: 711 AASYELRFQQMDGYYKESAGATPIPVMHSSPL 742
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTS 346
+LL+GRDV A G+GK + + I+ QI S
Sbjct: 220 SLLRGRDVAGVAIEGSGKRLAYLLPIIHQITES 252
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 66 GPSKDQG-SYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRG 194
GP +QG S GPPG PG T W+ + N E LRG
Sbjct: 3363 GPKGEQGRSISGPPG-PPGAPGTSWNDSIVNGGLSNSLLESLRG 3405
>SB_34297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 512
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 332 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 460
Q D++++E IL ELA++IQK++ LN K AC+
Sbjct: 58 QGDSTLKEPVQKILIIGLELAKEIQKLIDEASSGLNIKHAACL 100
>SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8)
Length = 210
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1
Query: 562 LHANTIKLFVLDEADEMLSR 621
L +IK+ VLDEADEML++
Sbjct: 31 LDTRSIKMLVLDEADEMLNK 50
>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
Length = 2059
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +3
Query: 9 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGP 101
+M Y SER P D P+ D GS D P
Sbjct: 1171 SMEYDSERHPYQAPADEMVNPNTDGGSRDNP 1201
>SB_15811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 448 AFSIQVITKSYHHLLNLLGQLSCGSQDQSLTFTNACID 335
A ++Q +TK+Y HL+N+ G +++ T C D
Sbjct: 201 AHALQTLTKAYRHLMNVTGN---RDKEEKANATEQCAD 235
>SB_55750| Best HMM Match : PWWP (HMM E-Value=6.4e-07)
Length = 532
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE 355
+ G DV+A + SGT K + F ++++ D+ R+
Sbjct: 245 VNGSDVVANSSSGTVKRSLFLPEVMEENDSVFRD 278
>SB_44173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 51 EDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEE 182
+D N + D G+ D D GT+D D D V+ DD N +
Sbjct: 71 DDDGNIDNDDDGNIDND---DDGTIDNDDDGYVDNVDDDNFDND 111
>SB_30467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 51 EDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEE 182
+D N + D G+ D D GT+D D D V+ DD N +
Sbjct: 54 DDDGNIDNDDDGNIDND---DDGTIDNDDDGYVDNVDDDNFDND 94
>SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)
Length = 829
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -3
Query: 203 GVYASQQFFFEVHVIEGFDNLIPVGVKC 120
GVY F H + GF N IP +C
Sbjct: 742 GVYLESNVFQNGHALVGFQNTIPASQEC 769
>SB_8812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +2
Query: 428 DHLNAKCHACIG-GTNVRED-IRQLESGVM 511
D++N++C C+G G ++ ++ RQL G+M
Sbjct: 140 DYINSRCRRCVGIGEDLAKNFFRQLTEGIM 169
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKT 304
++ GRDV+A AQ+G+GKT
Sbjct: 168 VIAGRDVMACAQTGSGKT 185
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,583,943
Number of Sequences: 59808
Number of extensions: 493491
Number of successful extensions: 2296
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 2049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2280
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -