Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0690
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       51   1e-08
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.8  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   1.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.2  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   5.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.3  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 50.8 bits (116), Expect = 1e-08
 Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISIL-----QQIDTSIR----ECQALILAPTRELAQQI 403
           ++ GRD++A AQ+G+GKTA F++ I+     + +D  +     E Q +I++PTREL  QI
Sbjct: 230 IMNGRDLMACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQI 289

Query: 404 QKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 505
            + ++    +   K     GGT+V     +L +G
Sbjct: 290 WQQIVKFSLNSILKTVVAYGGTSVMHQRGKLSAG 323



 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 15/37 (40%), Positives = 26/37 (70%)
 Frame = +1

Query: 505 CYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
           C+++V TPGR+ D + +  +  ++++  VLDEAD ML
Sbjct: 324 CHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRML 360



 Score = 27.9 bits (59), Expect = 0.084
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +3

Query: 141 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
           Q +E+F+   L+  +L  I   G++KP+ +Q+ A+
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHAL 227


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 285 SQELEKLLLSLYRFYNKSIQAFVNV 359
           S++ E+L+  L+R YNK I+   N+
Sbjct: 24  SEDEERLVRDLFRGYNKLIRPVQNM 48


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 476 GHWCHQCKHGI*HSS 432
           G  CH+CK+GI  SS
Sbjct: 40  GDSCHKCKYGIAMSS 54


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +1

Query: 454 LHWWHQCP 477
           LH WH CP
Sbjct: 470 LHHWHHCP 477


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 612 HFISFIKNKKFDGVGMKRTTSYHIIY-TTWSA 520
           H I+ I +K F GVG+    S+  I+   W++
Sbjct: 126 HLINQIPDKSFPGVGVIDFESWRPIFRQNWAS 157


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = +3

Query: 219 PSAIQQRAIXPCSKDAMLSLKPSQELEKLLLSLYRFYNKSI 341
           PS        P S+  + +L+P    ++     YR YN ++
Sbjct: 393 PSLYPMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPAL 433


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,132
Number of Sequences: 438
Number of extensions: 4638
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)