Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0690
(622 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 123 8e-29
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 122 1e-28
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 120 8e-28
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 118 3e-27
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 106 1e-23
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 80 1e-15
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 80 1e-15
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 77 7e-15
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 77 7e-15
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 72 4e-13
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 66 2e-11
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 62 2e-10
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 62 3e-10
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 62 3e-10
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 60 1e-09
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 60 1e-09
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 60 1e-09
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 59 2e-09
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 59 3e-09
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 56 1e-08
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 56 3e-08
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 56 3e-08
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 56 3e-08
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 56 3e-08
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 56 3e-08
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 55 3e-08
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 54 8e-08
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 54 1e-07
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 53 2e-07
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 53 2e-07
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 52 4e-07
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 52 4e-07
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 52 4e-07
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 51 5e-07
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 51 5e-07
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 51 5e-07
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 51 5e-07
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 51 7e-07
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 51 7e-07
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 50 9e-07
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 49 2e-06
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 49 3e-06
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 47 9e-06
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 47 9e-06
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 46 2e-05
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 46 3e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 45 5e-05
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 45 5e-05
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 44 6e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 44 1e-04
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 43 2e-04
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 43 2e-04
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 42 2e-04
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 42 2e-04
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 42 3e-04
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 42 4e-04
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 41 8e-04
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 40 0.001
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 40 0.002
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 38 0.004
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 37 0.009
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 37 0.009
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 35 0.050
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 31 0.62
At3g10020.1 68416.m01202 expressed protein 30 1.1
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 30 1.1
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 29 2.5
At2g28600.1 68415.m03476 expressed protein 28 4.3
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi... 28 5.7
At1g76010.1 68414.m08825 expressed protein 28 5.7
At4g17080.1 68417.m02574 MORN (Membrane Occupation and Recogniti... 27 7.6
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 123 bits (297), Expect = 8e-29
Identities = 58/84 (69%), Positives = 71/84 (84%)
Frame = +2
Query: 257 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 436
+G DVI QAQSGTGKTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L
Sbjct: 75 KGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYL 134
Query: 437 NAKCHACIGGTNVREDIRQLESGV 508
K HAC+GGT+VRED R L++GV
Sbjct: 135 GVKVHACVGGTSVREDQRILQAGV 158
Score = 66.1 bits (154), Expect = 2e-11
Identities = 31/44 (70%), Positives = 34/44 (77%)
Frame = +3
Query: 129 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIXPCSK 260
T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I P K
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK 75
Score = 63.3 bits (147), Expect = 1e-10
Identities = 28/38 (73%), Positives = 35/38 (92%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
+VVVGTPGRV+DM+ R++L A+ IK+FVLDEADEMLSR
Sbjct: 159 HVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSR 196
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 122 bits (295), Expect = 1e-28
Identities = 58/84 (69%), Positives = 70/84 (83%)
Frame = +2
Query: 257 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 436
+G DVI QAQSGTGKTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L
Sbjct: 77 KGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYL 136
Query: 437 NAKCHACIGGTNVREDIRQLESGV 508
K AC+GGT+VRED R L+SGV
Sbjct: 137 GVKAQACVGGTSVREDQRVLQSGV 160
Score = 66.1 bits (154), Expect = 2e-11
Identities = 30/47 (63%), Positives = 37/47 (78%)
Frame = +3
Query: 120 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIXPCSK 260
T T++D+V ++FD M L+ +LLRGIYAYGFEKPSAIQQR I P K
Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCK 77
Score = 62.1 bits (144), Expect = 3e-10
Identities = 27/38 (71%), Positives = 35/38 (92%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
+VVVGTPGRV+D++ R++L A+ IK+FVLDEADEMLSR
Sbjct: 161 HVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSR 198
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 120 bits (289), Expect = 8e-28
Identities = 56/84 (66%), Positives = 70/84 (83%)
Frame = +2
Query: 257 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL 436
+G DVI QAQSGTGKTATF +LQQ+D ++ +CQAL+LAPTRELAQQI+KV+ ALGD+
Sbjct: 75 KGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQ 134
Query: 437 NAKCHACIGGTNVREDIRQLESGV 508
K HAC+GGT+VRED R L++GV
Sbjct: 135 GVKVHACVGGTSVREDQRILQAGV 158
Score = 66.9 bits (156), Expect = 1e-11
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = +3
Query: 129 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIXPCSK 260
T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I P K
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK 75
Score = 60.9 bits (141), Expect = 7e-10
Identities = 27/38 (71%), Positives = 34/38 (89%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
+VVVGTPGRV+DM+ R++L + IK+FVLDEADEMLSR
Sbjct: 159 HVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSR 196
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 118 bits (284), Expect = 3e-27
Identities = 56/86 (65%), Positives = 69/86 (80%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+LQGRDVIAQAQSGTGKT+ ++S+ Q +DTS RE QALIL+PTRELA Q +K + A+G
Sbjct: 69 ILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGL 128
Query: 431 HLNAKCHACIGGTNVREDIRQLESGV 508
H N + HACIGG +V EDIR+LE GV
Sbjct: 129 HANIQAHACIGGNSVGEDIRKLEHGV 154
Score = 61.3 bits (142), Expect = 5e-10
Identities = 25/41 (60%), Positives = 34/41 (82%)
Frame = +3
Query: 129 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIXP 251
TD + + +F+DM +KE++LRG+Y YGFEKPSAIQQRA+ P
Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMP 68
Score = 56.0 bits (129), Expect = 2e-08
Identities = 26/38 (68%), Positives = 30/38 (78%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
+VV GTPGRV DMI RR+L IKL +LDE+DEMLSR
Sbjct: 155 HVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSR 192
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 106 bits (255), Expect = 1e-23
Identities = 48/86 (55%), Positives = 67/86 (77%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+L+GRDVIAQAQSGTGKT+ +IS+ Q ++ S R+ Q L+L+P+RELA Q +K + A+G
Sbjct: 56 ILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGA 115
Query: 431 HLNAKCHACIGGTNVREDIRQLESGV 508
H N + HACIGG ++ EDI++LE GV
Sbjct: 116 HTNIQAHACIGGKSIGEDIKKLERGV 141
Score = 54.0 bits (124), Expect = 8e-08
Identities = 24/38 (63%), Positives = 29/38 (76%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
+ V GTPGRVYDMI R +L +KL VLDE+DEMLS+
Sbjct: 142 HAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSK 179
Score = 53.2 bits (122), Expect = 1e-07
Identities = 20/38 (52%), Positives = 31/38 (81%)
Frame = +3
Query: 147 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIXPCSK 260
+++FDDM + +++LRG+Y YG++KPS IQQRA+ P K
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILK 58
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 80.2 bits (189), Expect = 1e-15
Identities = 38/81 (46%), Positives = 55/81 (67%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
L GRD++A+A++GTGKTA F I +L++ID QA+I+ PTRELA Q +V LG H
Sbjct: 166 LTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKH 225
Query: 434 LNAKCHACIGGTNVREDIRQL 496
L + GGT++++DI +L
Sbjct: 226 LKIQVMVTTGGTSLKDDIMRL 246
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F+D LK ELL GIY GFE+PS IQ+ +I
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESI 162
Score = 35.5 bits (78), Expect = 0.029
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
+++VGTPGR+ D+ + + V+DEAD++LS+
Sbjct: 251 HLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQ 288
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 80.2 bits (189), Expect = 1e-15
Identities = 38/81 (46%), Positives = 55/81 (67%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
L GRD++A+A++GTGKTA F I +L++ID QA+I+ PTRELA Q +V LG H
Sbjct: 166 LTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKH 225
Query: 434 LNAKCHACIGGTNVREDIRQL 496
L + GGT++++DI +L
Sbjct: 226 LKIQVMVTTGGTSLKDDIMRL 246
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F+D LK ELL GIY GFE+PS IQ+ +I
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESI 162
Score = 35.5 bits (78), Expect = 0.029
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
+++VGTPGR+ D+ + + V+DEAD++LS+
Sbjct: 251 HLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQ 288
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 77.4 bits (182), Expect = 7e-15
Identities = 38/85 (44%), Positives = 55/85 (64%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
L G D++A+A++GTGKT F I +L++ID + QA+IL PTRELA Q +V L +
Sbjct: 159 LTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKY 218
Query: 434 LNAKCHACIGGTNVREDIRQLESGV 508
LN + GGT++R+DI +L V
Sbjct: 219 LNIQVMVTTGGTSLRDDIMRLHQPV 243
Score = 41.5 bits (93), Expect = 4e-04
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F+D LK +LL+GIY GFEKPS IQ+ +I
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155
Score = 35.1 bits (77), Expect = 0.038
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
+++VGTPGR+ D+ + + V+DEAD++LS
Sbjct: 244 HLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLS 280
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 77.4 bits (182), Expect = 7e-15
Identities = 38/85 (44%), Positives = 55/85 (64%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
L G D++A+A++GTGKT F I +L++ID + QA+IL PTRELA Q +V L +
Sbjct: 159 LTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKY 218
Query: 434 LNAKCHACIGGTNVREDIRQLESGV 508
LN + GGT++R+DI +L V
Sbjct: 219 LNIQVMVTTGGTSLRDDIMRLHQPV 243
Score = 41.5 bits (93), Expect = 4e-04
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F+D LK +LL+GIY GFEKPS IQ+ +I
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155
Score = 35.1 bits (77), Expect = 0.038
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
+++VGTPGR+ D+ + + V+DEAD++LS
Sbjct: 244 HLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLS 280
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 71.7 bits (168), Expect = 4e-13
Identities = 36/81 (44%), Positives = 51/81 (62%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 433
L G D++A+A++GTGKT F I L++ID QA+IL PTRELA Q +V L +
Sbjct: 189 LTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKY 248
Query: 434 LNAKCHACIGGTNVREDIRQL 496
L + GGT++R+DI +L
Sbjct: 249 LKIEVMVTTGGTSLRDDIMRL 269
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F+D LK +LLRGIY GFEKPS IQ+ +I
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESI 185
Score = 35.1 bits (77), Expect = 0.038
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
+++VGTPGR+ D+ + + V+DEAD++LS
Sbjct: 274 HLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLS 310
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 66.1 bits (154), Expect = 2e-11
Identities = 34/84 (40%), Positives = 50/84 (59%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGD 430
+L GRDV+ AQ+G+GKTA F++ IL ++ AL++ PTRELA Q+ + ALG
Sbjct: 92 ILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGS 151
Query: 431 HLNAKCHACIGGTNVREDIRQLES 502
LN +C +GG ++ L S
Sbjct: 152 CLNLRCSVIVGGMDMLTQTMSLVS 175
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 62.5 bits (145), Expect = 2e-10
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVVIAL 424
+L G DV+A A++G+GKTA F I +L+++ + + +ALIL+PTR+LA+Q K L
Sbjct: 62 ILSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKEL 121
Query: 425 GDHLNAKCHACIGGTNVREDIRQLESG 505
G + + +GG ++ + +L G
Sbjct: 122 GKFTDLRVSLLVGGDSMEDQFEELTKG 148
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 62.1 bits (144), Expect = 3e-10
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +2
Query: 260 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 436
G DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +L
Sbjct: 83 GMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLP 142
Query: 437 NAKCHACIGGTNVR 478
+ K GG N++
Sbjct: 143 DTKVSVFYGGVNIK 156
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++VVGTPGRV + + L ++ F+LDE D+ML
Sbjct: 168 HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKML 203
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F D LK ELLR I GFE PS +Q I
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECI 77
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 62.1 bits (144), Expect = 3e-10
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +2
Query: 260 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL- 436
G DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +L
Sbjct: 83 GMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLP 142
Query: 437 NAKCHACIGGTNVR 478
+ K GG N++
Sbjct: 143 DTKVSVFYGGVNIK 156
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++VVGTPGRV + + L ++ F+LDE D+ML
Sbjct: 168 HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKML 203
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F D LK ELLR I GFE PS +Q I
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECI 77
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 60.1 bits (139), Expect = 1e-09
Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +2
Query: 266 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NA 442
DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +L +
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 61
Query: 443 KCHACIGGTNVR 478
K GG N++
Sbjct: 62 KVSVFYGGVNIK 73
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++VVGTPGRV + + L ++ F+LDE D+ML
Sbjct: 85 HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKML 120
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 60.1 bits (139), Expect = 1e-09
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIAL 424
L GRD+ A A +G+GKTA F++ L+++ + + LIL PTRELA QI ++ L
Sbjct: 202 LTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNL 261
Query: 425 GDHLNAKCHACIGGTNVRE 481
+ KC +GG +VRE
Sbjct: 262 AQFTDIKCGLIVGGLSVRE 280
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 150 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
+TF ++NL LLR G++KP+ IQ I
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACI 198
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 60.1 bits (139), Expect = 1e-09
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVV 415
++GRD+I +A++GTGKT F I I+ +I R L+LAPTRELA+Q++K
Sbjct: 139 MEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEF 198
Query: 416 IALGDHLNAKCHACIGGTNVREDIRQLESGV 508
L+ C GGT + + +RQL+ GV
Sbjct: 199 RESAPSLDTIC--LYGGTPIGQQMRQLDYGV 227
Score = 45.2 bits (102), Expect = 4e-05
Identities = 20/35 (57%), Positives = 27/35 (77%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
V VGTPGRV D++ R AL+ + ++ VLDEAD+ML
Sbjct: 229 VAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQML 263
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 59.3 bits (137), Expect = 2e-09
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVV 415
++GRD+I +A++GTGKT F I I+ +I + Q L+LAPTRELA+Q++K
Sbjct: 151 MEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEF 210
Query: 416 IALGDHLNAKCHACIGGTNVREDIRQLESGV 508
L+ C GGT + + +R+L G+
Sbjct: 211 RESAPSLDTIC--LYGGTPIGQQMRELNYGI 239
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
V VGTPGR+ D++ R AL+ + ++ VLDEAD+ML
Sbjct: 241 VAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQML 275
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 58.8 bits (136), Expect = 3e-09
Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQ 400
LL+GRD++A AQ+G+GKTA F I+ I D ++ + A+IL+PTRELA Q
Sbjct: 193 LLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQ 252
Query: 401 IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
I K GGT + + +R+LE GV
Sbjct: 253 IHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGV 288
Score = 36.3 bits (80), Expect = 0.016
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++V TPGR+ D++ R + I+ LDEAD ML
Sbjct: 290 ILVATPGRLNDLLERARVSMQMIRFLALDEADRML 324
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 56.4 bits (130), Expect = 1e-08
Identities = 42/105 (40%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
Frame = +2
Query: 230 PATRNXA--LLQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALIL 373
P RN L GRD++A AQ+G+GKTA F I+ I D I + A+IL
Sbjct: 171 PVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVIL 230
Query: 374 APTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
+PTRELA QI K GGT V + IR+LE GV
Sbjct: 231 SPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGV 275
Score = 35.5 bits (78), Expect = 0.029
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++V TPGR+ D++ R + ++ LDEAD ML
Sbjct: 277 ILVATPGRLNDLLERGRVSLQMVRFLALDEADRML 311
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 55.6 bits (128), Expect = 3e-08
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 10/75 (13%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQID------TSIREC----QALILAPTRELAQQI 403
LQGRD+IA+A++GTGKT F I I++++ T+ R + L+LAPTRELA+Q+
Sbjct: 137 LQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQV 196
Query: 404 QKVVIALGDHLNAKC 448
+K + +L+ C
Sbjct: 197 EKEIKESAPYLSTVC 211
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/36 (55%), Positives = 27/36 (75%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
VVVGTPGR+ D+I R+L ++ VLDEAD+ML+
Sbjct: 231 VVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLA 266
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 55.6 bits (128), Expect = 3e-08
Identities = 25/55 (45%), Positives = 39/55 (70%)
Frame = +2
Query: 263 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 427
+ +IAQA +G+GKT F + +L ++D ++RE QAL + PTRELA Q +V+ +G
Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMG 186
Score = 36.7 bits (81), Expect = 0.012
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
+VV+GTPG + + + L N +K+ V DEAD ML+
Sbjct: 216 HVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLA 252
Score = 33.9 bits (74), Expect = 0.087
Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYA-YGFEKPSAIQ 233
F+D+NL EL++G+Y FEKPS IQ
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQ 119
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 55.6 bits (128), Expect = 3e-08
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 421
+QGRD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ+ +
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252
Query: 422 LGDHLNAKCHACIGGTNVREDIRQLESG 505
G C GG +R LE G
Sbjct: 253 FGRSSRISCTCLYGGAPKGPQLRDLERG 280
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+VV TPGR+ D++ R + I VLDEAD ML
Sbjct: 283 IVVATPGRLNDILEMRRISLRQISYLVLDEADRML 317
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 55.6 bits (128), Expect = 3e-08
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 421
+QGRD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ+ +
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252
Query: 422 LGDHLNAKCHACIGGTNVREDIRQLESG 505
G C GG +R LE G
Sbjct: 253 FGRSSRISCTCLYGGAPKGPQLRDLERG 280
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+VV TPGR+ D++ R + I VLDEAD ML
Sbjct: 283 IVVATPGRLNDILEMRRISLRQISYLVLDEADRML 317
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 55.6 bits (128), Expect = 3e-08
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 421
+QGRD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ+ +
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252
Query: 422 LGDHLNAKCHACIGGTNVREDIRQLESG 505
G C GG +R LE G
Sbjct: 253 FGRSSRISCTCLYGGAPKGPQLRDLERG 280
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+VV TPGR+ D++ R + I VLDEAD ML
Sbjct: 283 IVVATPGRLNDILEMRRISLRQISYLVLDEADRML 317
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 55.2 bits (127), Expect = 3e-08
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 8/92 (8%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQID-----TSIRECQ---ALILAPTRELAQQIQK 409
LQ RDVI A++G+GKTA F + +L I + E + A+++APTRELAQQI++
Sbjct: 348 LQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEE 407
Query: 410 VVIALGDHLNAKCHACIGGTNVREDIRQLESG 505
+ +L + + +GG ++ E ++ G
Sbjct: 408 ETVKFAHYLGFRVTSIVGGQSIEEQGLKITQG 439
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +1
Query: 505 CYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
C +V+ TPGR+ D + RR N VLDEAD M+
Sbjct: 440 CEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMI 476
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 147 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
+ ++++ L ELL+ + G++KPS IQ AI
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAI 344
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 54.0 bits (124), Expect = 8e-08
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 12/83 (14%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------------ALILAPTRELAQ 397
L+G+DVI AQ+G+GKT F+I ILQ + + + + A +L+PTRELA
Sbjct: 44 LEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAI 103
Query: 398 QIQKVVIALGDHLNAKCHACIGG 466
QI + ALG ++ +C +GG
Sbjct: 104 QIAEQFEALGADISLRCAVLVGG 126
Score = 35.9 bits (79), Expect = 0.022
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +1
Query: 496 GEWCYVVVGTPGRVYD-MITRRALHANTIKLFVLDEADEMLS 618
G+ +V+V TPGR++D M + ++K VLDEAD +L+
Sbjct: 137 GKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLN 178
Score = 33.1 bits (72), Expect = 0.15
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +3
Query: 138 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
++VV+TF ++ ++EEL++ G++ PS IQ A+
Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEAL 40
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 53.6 bits (123), Expect = 1e-07
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVV 415
++ GRD I A++G+GKT F + +L+ I D E L++APTREL QQI +
Sbjct: 563 IMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDI 622
Query: 416 IALGDHLNAKCHACIGGTNVREDIRQLESG 505
L +C GG+ V + I +L+ G
Sbjct: 623 RKFSKPLGIRCVPVYGGSGVAQQISELKRG 652
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 52.8 bits (121), Expect = 2e-07
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 421
+Q RD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ +
Sbjct: 264 MQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALK 323
Query: 422 LGDHLNAKCHACIGGTNVREDIRQLESGV 508
G C GG ++++E GV
Sbjct: 324 FGKSSKISCACLYGGAPKGPQLKEIERGV 352
Score = 36.7 bits (81), Expect = 0.012
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+VV TPGR+ D++ + + + + VLDEAD ML
Sbjct: 354 IVVATPGRLNDILEMKRISLHQVSYLVLDEADRML 388
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 52.8 bits (121), Expect = 2e-07
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 421
LQ RD++A A++G+GKT + I +L+ R LILAPTRELA QIQ +
Sbjct: 470 LQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALR 529
Query: 422 LGDHLNAKCHACIGGTNVREDIRQLESG 505
G C GG +++LE G
Sbjct: 530 FGRSSRISCTCLYGGAPKGPQLKELERG 557
Score = 37.9 bits (84), Expect = 0.005
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+VV TPGR+ D++ + + + L VLDEAD ML
Sbjct: 560 IVVATPGRLNDILEMKMIDFQQVSLLVLDEADRML 594
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 51.6 bits (118), Expect = 4e-07
Identities = 25/54 (46%), Positives = 33/54 (61%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 412
L GRD I AQ+G+GKT T+ + I I+ QA+I+ PTREL Q+ KV
Sbjct: 110 LFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKV 163
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 51.6 bits (118), Expect = 4e-07
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQI 403
A L G+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL Q+
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 202
Query: 404 QKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
+ LG L K +GG + + +++ GV
Sbjct: 203 EDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGV 237
Score = 43.2 bits (97), Expect = 1e-04
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
+++GTPGRV D++++ + + I FVLDE D ML R
Sbjct: 239 LIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQR 275
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 51.6 bits (118), Expect = 4e-07
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQI 403
A L G+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL Q+
Sbjct: 6 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 65
Query: 404 QKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
+ LG L K +GG + + +++ GV
Sbjct: 66 EDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGV 100
Score = 43.2 bits (97), Expect = 1e-04
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
+++GTPGRV D++++ + + I FVLDE D ML R
Sbjct: 102 LIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQR 138
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 51.2 bits (117), Expect = 5e-07
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQ 400
LL RD++A AQ+G+GKTA F I+ I D + + A+IL+PTRELA Q
Sbjct: 185 LLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQ 244
Query: 401 IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 505
I K GGT + + +R+LE G
Sbjct: 245 IHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERG 279
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 505 CYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
C ++V TPGR+ D++ R + I+ LDEAD ML
Sbjct: 280 CDILVATPGRLNDLLERARVSMQMIRFLALDEADRML 316
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 51.2 bits (117), Expect = 5e-07
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQ 400
LL RD++A AQ+G+GKTA F I+ I D + + A+IL+PTRELA Q
Sbjct: 185 LLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQ 244
Query: 401 IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 505
I K GGT + + +R+LE G
Sbjct: 245 IHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERG 279
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 505 CYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
C ++V TPGR+ D++ R + I+ LDEAD ML
Sbjct: 280 CDILVATPGRLNDLLERARVSMQMIRFLALDEADRML 316
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 51.2 bits (117), Expect = 5e-07
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVI 418
LL+G+DV+ A++G+GKT F ++ +L + S R +++ PTRELA Q + V
Sbjct: 123 LLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVAE 182
Query: 419 ALGDHLNAKCHACIGGTNVREDIRQLESG 505
L H + IGG N R + +++ SG
Sbjct: 183 ELLKHHSQTVSMVIGGNNRRSEAQRIASG 211
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 51.2 bits (117), Expect = 5e-07
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVV 415
++ GRD I A++G+GKT F + +L+ I D E L++APTREL QQI +
Sbjct: 430 IMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDI 489
Query: 416 IALGDHLNAKCHACIGGTNVREDIRQLESG 505
L C GG+ V + I +L+ G
Sbjct: 490 RKFSKALGIICVPVYGGSGVAQQISELKRG 519
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 50.8 bits (116), Expect = 7e-07
Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVI 418
L+GRD+I A++G+GKT + + L + R Q LILAPTRELA QIQ+
Sbjct: 200 LKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESR 259
Query: 419 ALGDHLNAKCHACIGGTNVREDIRQLESGV 508
G + GG IR L GV
Sbjct: 260 KFGLRSGVRSTCIYGGAPKGPQIRDLRRGV 289
Score = 35.5 bits (78), Expect = 0.029
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+V+ TPGR+ DM+ + + + VLDEAD ML
Sbjct: 291 IVIATPGRLIDMLECQHTNLKRVTYLVLDEADRML 325
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 50.8 bits (116), Expect = 7e-07
Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVI 418
L+GRD+I A++G+GKT + + L + R Q LILAPTRELA QIQ+
Sbjct: 200 LKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESR 259
Query: 419 ALGDHLNAKCHACIGGTNVREDIRQLESGV 508
G + GG IR L GV
Sbjct: 260 KFGLRSGVRSTCIYGGAPKGPQIRDLRRGV 289
Score = 35.5 bits (78), Expect = 0.029
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+V+ TPGR+ DM+ + + + VLDEAD ML
Sbjct: 291 IVIATPGRLIDMLECQHTNLKRVTYLVLDEADRML 325
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 50.4 bits (115), Expect = 9e-07
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVI 418
++GRD+I A++G+GKT ++ + + ++ L+LAPTRELA QIQ+
Sbjct: 134 MKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEAS 193
Query: 419 ALGDHLNAKCHACIGGTNVREDIRQLESGV 508
G K GG +R L+ GV
Sbjct: 194 KFGSSSKIKTTCIYGGVPKGPQVRDLQKGV 223
Score = 35.5 bits (78), Expect = 0.029
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+V+ TPGR+ DM+ + + VLDEAD ML
Sbjct: 225 IVIATPGRLIDMMESNNTNLRRVTYLVLDEADRML 259
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 49.2 bits (112), Expect = 2e-06
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC---------QALILAPTRELAQQI 403
LL GRD+I A++G+GKT F I + + ++ L+L+PTRELA QI
Sbjct: 148 LLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQI 207
Query: 404 QKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
V+ G+ K GG++ I + SGV
Sbjct: 208 SDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGV 242
Score = 40.7 bits (91), Expect = 8e-04
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+V+GTPGR+ D+I L + + VLDEAD ML
Sbjct: 244 IVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRML 278
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/79 (29%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +2
Query: 263 RDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQIQKVVIALGDHLN 439
RD+ + +G+GKT ++++ I+Q + +R +AL++ PTR+LA Q++ V A+ +
Sbjct: 63 RDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVG 122
Query: 440 AKCHACIGGTNVREDIRQL 496
+ +G +++ +I QL
Sbjct: 123 LSVGSAVGQSSIAGEISQL 141
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 47.2 bits (107), Expect = 9e-06
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELA-QQI 403
+LQG+D++A+A++GTGKT F + ++ + D L++ PTRELA Q
Sbjct: 114 ILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAA 173
Query: 404 QKVVIALGDHLNAKCHACIGGTNVREDIRQLE 499
+ I L H + IGGT + + R+L+
Sbjct: 174 AEANILLKYHPSIGVQVVIGGTKLPTEQRRLQ 205
Score = 33.1 bits (72), Expect = 0.15
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +1
Query: 505 CYVVVGTPGRVYDMITRRALHANT---IKLFVLDEADEML 615
C ++V TPGR+ D I + A +K+ VLDEAD +L
Sbjct: 209 CQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLL 248
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 47.2 bits (107), Expect = 9e-06
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKVV 415
+L GRDVI A++G+GKTA F + ++ I ++ + +I APTRELA QI
Sbjct: 262 VLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEA 321
Query: 416 IALGDHLNAKCHACIGGTNVREDIRQLESG 505
+ A GG + E ++L++G
Sbjct: 322 KKFSKAYGLRVSAVYGGMSKHEQFKELKAG 351
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +1
Query: 505 CYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 612
C +VV TPGR+ DM+ +AL VLDEAD M
Sbjct: 352 CEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRM 387
Score = 31.1 bits (67), Expect = 0.62
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 132 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
D + V+TF+D +++ I +EKP+AIQ +A+
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQAL 259
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 46.4 bits (105), Expect = 2e-05
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ-I 403
+LQG+DV+A+A++GTGKT F + ++ + D+ L++ PTRELA Q
Sbjct: 416 ILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAA 475
Query: 404 QKVVIALGDHLNAKCHACIGGTNVREDIRQLES 502
+ L H + IGGT + + R++++
Sbjct: 476 AEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQT 508
Score = 33.1 bits (72), Expect = 0.15
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +1
Query: 505 CYVVVGTPGRVYDMITRRALHANT---IKLFVLDEADEML 615
C ++V TPGR+ D I + A +K+ VLDEAD +L
Sbjct: 511 CQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLL 550
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 45.6 bits (103), Expect = 3e-05
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSI----SILQQIDT-----SIRECQALILAPTRELAQQIQ 406
L G+D + +A++GTGK+ F + ++L+ +++ + LIL PTRELA QI
Sbjct: 410 LDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIA 469
Query: 407 KVVIA-LGDHLNAKCHACIGGTNVREDIRQLES 502
A L +H IGGT R D ++LES
Sbjct: 470 AEGKALLKNHDGIGVQTLIGGTRFRLDQQRLES 502
Score = 33.9 bits (74), Expect = 0.087
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = +1
Query: 499 EWCYVVVGTPGRVYDMITRRA---LHANTIKLFVLDEADEML 615
E C +++ TPGR+ D I ++ +KLF++DEAD +L
Sbjct: 503 EPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLL 544
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 44.8 bits (101), Expect = 5e-05
Identities = 24/64 (37%), Positives = 43/64 (67%), Gaps = 6/64 (9%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRE---CQALILAPTRELAQQIQKV 412
+L+G+DV+A+A++G+GKT + + +LQ++ D+ ++ A IL P+REL QQ+
Sbjct: 80 ILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTE 139
Query: 413 VIAL 424
V +L
Sbjct: 140 VSSL 143
Score = 32.7 bits (71), Expect = 0.20
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 138 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
++ ++F+++ L L+R + G EKP+ IQQ AI
Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAI 77
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 44.8 bits (101), Expect = 5e-05
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 12/95 (12%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSI----SILQQIDT-----SIRECQALILAPTRELAQQIQ 406
L G+D + +A++GTGK+ F + ++L+ +++ + ALIL PTRELA QI
Sbjct: 363 LDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIA 422
Query: 407 ---KVVIALGDHLNAKCHACIGGTNVREDIRQLES 502
K ++ D + + IGGT + D ++LES
Sbjct: 423 AEGKALLKFHDGIGVQ--TLIGGTRFKLDQQRLES 455
Score = 33.9 bits (74), Expect = 0.087
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = +1
Query: 499 EWCYVVVGTPGRVYDMITRRA---LHANTIKLFVLDEADEML 615
E C +++ TPGR+ D I ++ +KLF++DEAD +L
Sbjct: 456 EPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLL 497
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 44.4 bits (100), Expect = 6e-05
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ-I 403
+L+G+DV+A+A++GTGKT F + ++ + D AL++ PTRELA Q
Sbjct: 88 ILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAA 147
Query: 404 QKVVIALGDHLNAKCHACIGGTNVREDIRQLES 502
+ L H + IGGT + + +++++
Sbjct: 148 TEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQT 180
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 505 CYVVVGTPGRVYDMITRR---ALHANTIKLFVLDEADEML 615
C ++V TPGR+ D I A +K+ VLDEAD +L
Sbjct: 183 CQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLL 222
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 43.6 bits (98), Expect = 1e-04
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTS------IRECQALILAPTRELAQQIQKV 412
L +DV+ A +G+GKT F + ++ I S + +I++PTREL+ QI KV
Sbjct: 50 LCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKV 109
Query: 413 VIALGDHL-NAKCHACIGGTNVREDIRQLE 499
L N +GG V D+ LE
Sbjct: 110 AEPFVSTLPNVNSVLLVGGREVEADMNTLE 139
Score = 35.1 bits (77), Expect = 0.038
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +1
Query: 499 EWCYVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEML 615
E +++GTPGR+ DM+ R L +++ +LDEAD +L
Sbjct: 141 EGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLL 180
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 42.7 bits (96), Expect = 2e-04
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Frame = +2
Query: 221 FCNP--ATRNXALLQGRDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILA 376
FC P A L +DV A +G+GKT F + +++ + S + +I++
Sbjct: 38 FCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIIS 97
Query: 377 PTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIRQLE 499
PTREL+ QI V L N +GG V+ D++ +E
Sbjct: 98 PTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIE 139
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +1
Query: 499 EWCYVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEML 615
E C V++GTPGR+ D++ R L +++ +LDEAD +L
Sbjct: 141 EGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLL 180
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQI---------DTSIRECQALILAPTRELAQQ 400
A+++ + V+ + +G+GKT + + I+Q + T R + ++L PTREL++Q
Sbjct: 145 AVMERKSVVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQ 204
Query: 401 IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
+ +V ++ H + GG+ +R L + +
Sbjct: 205 VYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAI 240
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
+VVGTPGR+ I + I VLDEAD M R
Sbjct: 242 MVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDR 278
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/35 (57%), Positives = 26/35 (74%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
+VVGTPGR+ D I R+ L + ++ VLDEADEML
Sbjct: 227 IVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEML 261
Score = 41.1 bits (92), Expect = 6e-04
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSI----------RECQALILAPTRELAQQ 400
+L G D++ +A++G GKT F + IL+ + R L+L PTRELA+Q
Sbjct: 130 VLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQ 189
Query: 401 IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 508
+ A G L GG + +L+ GV
Sbjct: 190 VAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGV 225
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 42.3 bits (95), Expect = 2e-04
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 20/106 (18%)
Frame = +2
Query: 242 NXALLQGRDVIAQAQSGTGKTATFSISILQQ-IDTSIR----------ECQ--------- 361
N A QG+DVI A++G+GKT F + ILQ+ +D + E Q
Sbjct: 222 NVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLR 281
Query: 362 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 499
ALI+ PTRELA Q+ + + +L+ K +GG + R+L+
Sbjct: 282 ALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLK 327
Score = 35.9 bits (79), Expect = 0.022
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHA---NTIKLFVLDEADEMLSR 621
+VV TPGR++++++ H +++ FVLDEAD M+ R
Sbjct: 332 IVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVER 371
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 41.9 bits (94), Expect = 3e-04
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ----ALILAPTRELAQQIQKVVIA 421
L GRD++ A++G+GKT F I IL+++ + +I++PTRELA Q V+
Sbjct: 106 LCGRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNK 165
Query: 422 LGDHLNAKCHACIGG 466
+G IGG
Sbjct: 166 VGKFHKFSAGLLIGG 180
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 41.5 bits (93), Expect = 4e-04
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVI 418
L+ G DV+ A++G+GKT F ++ +L ++ + R L++ PTRELA Q V
Sbjct: 188 LMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAK 247
Query: 419 ALGDHLNAKCHACIGGTNVREDIRQLESGV 508
L + + IGG + + L GV
Sbjct: 248 ELLKYHSQTVGKVIGGEKRKTEAEILAKGV 277
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 40.7 bits (91), Expect = 8e-04
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 14/89 (15%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQI-------------DTSIRECQALILAPTRE 388
A+++G D + Q+ +G+GKT + + IL +I + E QA+I+AP+RE
Sbjct: 143 AIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRE 202
Query: 389 LAQQI-QKVVIALGDHLNAKCHACIGGTN 472
L QI ++V LG +GG N
Sbjct: 203 LGMQIVREVEKLLGPVHRRMVQQLVGGAN 231
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +1
Query: 511 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
+VVGTPGR+ ++ LH + + VLDE DE+LS
Sbjct: 246 IVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLS 281
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 40.3 bits (90), Expect = 0.001
Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 14/100 (14%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQ---ALILAPTRELAQQ-- 400
+L GRD+I A +G+GKT F + ++ ++I I + AL++ P+RELA+Q
Sbjct: 131 VLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTY 190
Query: 401 --IQKVVIALGD--HLNAKCHACIGGTNVREDIRQLESGV 508
+++ V +L + + + CIGG ++R + ++ GV
Sbjct: 191 DVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGV 230
Score = 36.7 bits (81), Expect = 0.012
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++VV TPGR+ D++ ++ + + +L LDEAD ++
Sbjct: 231 HIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLV 266
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 39.5 bits (88), Expect = 0.002
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKV 412
L +DV+ A +G+GKT F + ++ I S + +I++PTREL+ QI KV
Sbjct: 51 LCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKV 110
Query: 413 VIALGDHLNAKCHACIGGTNVRED 484
A+ AKC N E+
Sbjct: 111 ARAVRLDF-AKCREVEADMNTLEE 133
Score = 35.1 bits (77), Expect = 0.038
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +1
Query: 499 EWCYVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEML 615
E +++GTPGR+ DM+ R L +++ +LDEAD +L
Sbjct: 134 EGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLL 173
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 38.3 bits (85), Expect = 0.004
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 14/100 (14%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATF-----SISILQQIDTSIRECQ---ALILAPTRELAQQIQ 406
+L GRD+I A +G+GKT F I++ +++ I + LI+ P+RELA+Q
Sbjct: 180 ILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTY 239
Query: 407 KVV------IALGDHLNAKCHACIGGTNVREDIRQLESGV 508
+VV + + + CIGG ++R + ++ GV
Sbjct: 240 EVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGV 279
Score = 36.3 bits (80), Expect = 0.016
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 508 YVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 615
++VV TPGR+ DM+ ++ + + + LDEAD ++
Sbjct: 280 HIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLV 315
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 37.1 bits (82), Expect = 0.009
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQ 400
LL GR+ A A +G+GKT F +L ++ S +A+IL+P RELA Q
Sbjct: 175 LLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQ 225
Score = 32.7 bits (71), Expect = 0.20
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 502 WCYVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR 621
WC V++ TP R+ I + + + ++ VLDE+D++ +
Sbjct: 258 WCDVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQ 297
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 37.1 bits (82), Expect = 0.009
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKV 412
+L GRDV+ A +GTGKT + ++ + + AL++ PTREL Q+ +
Sbjct: 64 ILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYET 123
Query: 413 V 415
+
Sbjct: 124 L 124
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 34.7 bits (76), Expect = 0.050
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIREC-QALILAPTRELAQQI 403
++ G+ I QSG+GKT + + ++Q++ S C + ++L PT ELA Q+
Sbjct: 408 VIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
Query: 404 QKVVIALG-DHLNAKCHACIGGTNVREDIRQLESGV 508
++ + + GG R + LE GV
Sbjct: 468 LANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGV 503
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 31.1 bits (67), Expect = 0.62
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ--------------ALILAPTR 385
++L G+DVI A++G+GKT + I+ Q+ + + + +LIL P
Sbjct: 113 SILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPNV 172
Query: 386 ELAQQIQKVVIALGD 430
L +Q+ ++V L D
Sbjct: 173 MLCEQVVRMVNGLVD 187
>At3g10020.1 68416.m01202 expressed protein
Length = 149
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 66 GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQR 239
GP + D PP MD G + D +QV ++ DD+ + EL++G E P+ + +
Sbjct: 83 GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAV--ELVKGEVEVAKEAPAGVARV 140
Query: 240 AIXP 251
+ P
Sbjct: 141 EVDP 144
>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 691
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/53 (26%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = +2
Query: 314 SISILQQIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 466
+++ L+++ +++EC +A+ + P+ A Q++ + + LG+ NA+ H C G
Sbjct: 263 ALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSG 315
>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 376
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 365 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 469
LILA T + + K ++ LG ++NA C GGT
Sbjct: 46 LILACTNDDLYDVAKTLLELGSNVNAYRSGCNGGT 80
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +1
Query: 514 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLS 618
+V TP R+ +++T + + + + L V+DE + S
Sbjct: 250 IVATPERLLEIVTLKGVDISNVSLLVIDELGSLCS 284
>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 682
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +2
Query: 332 QIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 466
+++ +++EC +A+ P+ A Q++ + + LG+ NA+ H C+ G
Sbjct: 260 RLEEAVKECLEAVRCDPSYARAHQRLASLYLRLGEAENARRHLCVSG 306
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +3
Query: 21 SSERRSEDWPEDSK---NGPSKDQGSYDGPPGMDPG 119
S R D P + +GPS+ +G YDGP G G
Sbjct: 282 SQGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRGRG 317
>At4g17080.1 68417.m02574 MORN (Membrane Occupation and Recognition
Nexus) repeat-containing protein
/phosphatidylinositol-4-phosphate 5-kinase-related low
similarity to phosphatidylinositol-4-phosphate 5-kinase
AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
Pfam profile PF02493: MORN repeat
Length = 471
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -1
Query: 532 DLECPPP--HNTTLQLANIFT-DIGATNASMAFSIQVITKSYHHL 407
DL+ P H+ LQ+ I T DIGA ++ QV +S HHL
Sbjct: 27 DLDPKPKIKHHRPLQVPEILTPDIGAGAGFSVYNNQVQAQSRHHL 71
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,110,845
Number of Sequences: 28952
Number of extensions: 340550
Number of successful extensions: 1285
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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