Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0689
         (668 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7S7J8 Cluster: Predicted protein; n=1; Nematostella ve...    34   2.7  
UniRef50_UPI00006CD894 Cluster: hypothetical protein TTHERM_0052...    33   6.2  

>UniRef50_A7S7J8 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 355

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
 Frame = +1

Query: 295 FCY*LKVDSKKKSLCLESIKKVHCRLICLDKLTVYTTVRFS-HSTLCIVSLSYSNLGIHC 471
           FC      + K  LCL +       L+CL      TT  F+  + LC+ + ++++  + C
Sbjct: 203 FCLTTYNFTSKALLCLTTYNFTLKALLCL------TTYNFTLKALLCLTTYNFTSKALLC 256

Query: 472 HLLIALNILLVVCLHRIQLCL-VIKLQCTYSQHNLVLHCTQVFNLCFKNVL 621
           H     N+  ++CL      L  +    TY+  +  L C   +N   K +L
Sbjct: 257 HTTYNFNLKALLCLTTYHFTLKALLCLTTYNFTSKALLCLTTYNFTSKALL 307



 Score = 33.5 bits (73), Expect = 4.7
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
 Frame = +1

Query: 325 KKSLCLESIKKVHCRLICLDKLTVYTTVRF-SHSTLCIVSLSYSNLGIHCHLLIALNILL 501
           K  LCL +       L+CL      TT  F S + LC+ + ++++  + C      N+  
Sbjct: 265 KALLCLTTYHFTLKALLCL------TTYNFTSKALLCLTTYNFTSKALLCLTTYNFNLKA 318

Query: 502 VVCLHRIQLCLVIKLQCTYSQHNLVLHCTQVFNL-CF 609
           ++CL   +  L+      ++   L+ H T  F L CF
Sbjct: 319 LLCLTNYKTALLCLTTYNFTSKALLCHTTYNFTLKCF 355


>UniRef50_UPI00006CD894 Cluster: hypothetical protein
           TTHERM_00521970; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00521970 - Tetrahymena
           thermophila SB210
          Length = 274

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 17/74 (22%), Positives = 38/74 (51%)
 Frame = -2

Query: 628 QILKHF*NIN*IPECNEVLNYVGNKCIVT*LLNIIESYANIQQARYLVLLIDGNVYLN*N 449
           Q+ + +   + I   N+ + ++ N C +    + IES  N+Q   Y++  +D  V    N
Sbjct: 114 QVYQSYYKYDNINNSNQQVTFLVNPCKLVPSSSCIESNTNLQDQPYIIAGMDMLVAFYTN 173

Query: 448 TTRIQCTKYYARIV 407
           TT + C+  +++++
Sbjct: 174 TTILHCSDEWSKLI 187


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 613,174,952
Number of Sequences: 1657284
Number of extensions: 11863635
Number of successful extensions: 20977
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20941
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)