Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0689
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             27   2.4  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.6  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   7.5  
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar...    25   9.9  
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...    25   9.9  

>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = -1

Query: 521 ILCKHTTSKIFSAINRWQCIPKLEYDKDTM 432
           + C+   ++ F+AIN+WQ +   E +++ +
Sbjct: 138 VSCRRKDNRWFAAINKWQVMTAFELNEENL 167


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 392 VNLSKQINLQCTFLILSRHKDFFF 321
           +NLS   NL+  FL+   H  FFF
Sbjct: 307 LNLSSDTNLESDFLLRQIHAAFFF 330


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 364 CRLICLDKLTVYTTVRFSHSTLCIVSL 444
           CR IC    + Y  + F+   +C++SL
Sbjct: 78  CRCICKSNCSPYPILLFTRLYMCLISL 104


>SPAC26H5.09c |||GFO/IDH/MocA family
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 333 RFFFRIHLKLITKSYKYYTLPH 268
           RF+  +H  L+TK+++    PH
Sbjct: 322 RFYLEVHEALVTKTFETSVKPH 343


>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 568 YVGNKCIVT*LLNIIESYANIQQARYLVLLIDG 470
           +   KC    +LN++E   N+ Q +Y+  ++ G
Sbjct: 239 FADEKCFEKPMLNLLERILNLLQCKYISSILVG 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,921
Number of Sequences: 5004
Number of extensions: 58769
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)