Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0689
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)                     29   3.4  
SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_14358| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_1653| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1702

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 395 CTLLYDSRIVLCALYPCRILI 457
           C +LY+ R+VLC +  CR L+
Sbjct: 575 CVVLYNCRVVLCRVVRCRSLV 595


>SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 300

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +1

Query: 472 HLLIALNILLVVCLHRIQLCLVIKLQCTYSQH---NLVLHCTQVFNLCFK 612
           H+L A   +L  CLH +  CL +   C +  H   +++  C  V   C +
Sbjct: 125 HMLYACVHVLYECLHVLHACLHVLYACLHVLHACLHVLYACLHVLYACLR 174


>SB_14358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +1

Query: 358 VHCRLICLDKLTVYTTVRFSHSTLCIVSLSYSNLGIHCHLLIALNILLVVCLH 516
           VH  LI  + +T+   V   H+ L I +L    + +H HL+I   I  +VC+H
Sbjct: 8   VHVHLIIPNLITLLVCV---HAHLIIPNLITLLVCVHVHLIIPNFIAPLVCVH 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,589,700
Number of Sequences: 59808
Number of extensions: 396729
Number of successful extensions: 753
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)