Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0689
         (668 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL137477-1|CAB70758.1|  392|Homo sapiens hypothetical protein pr...    33   0.70 
AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens ...    32   1.6  

>AL137477-1|CAB70758.1|  392|Homo sapiens hypothetical protein
           protein.
          Length = 392

 Score = 33.5 bits (73), Expect = 0.70
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 364 CRLIC-LDKLTVYTTVRFSHSTLCIVSLSYSNLGIHCHLLIALNILLVVCLHRI 522
           C   C +   T+++T       +C + + Y++ GIH H    L +  VVC+ R+
Sbjct: 5   CTWYCSIHSATLFSTCTLHAYFMCFLCMLYASCGIHAHAPHMLRVNCVVCVWRV 58


>AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46861 fis, clone UTERU3011092. ).
          Length = 291

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
 Frame = +1

Query: 334 LCLESIKKVH-CRLICLDKLTVYTTVRFSHSTLCIVSLSYSNLGIHCHLLIALNILLVVC 510
           +C+     +H C  +C     VY+ V   H+ +C+   +  ++ IH +  + + I +  C
Sbjct: 135 MCIHMYTCIHICVFMCTMHAYVYSYVHM-HAYVCVHMYTCVHMCIHKYTCMHMCIHMYTC 193

Query: 511 LHRIQLCLVIKLQCTYSQHNLVLH 582
           +HR          C Y    + +H
Sbjct: 194 IHRCIFIYTYVYICVYIHIYICIH 217


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,815,049
Number of Sequences: 237096
Number of extensions: 1823794
Number of successful extensions: 2118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2118
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)