Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0689
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110479-6|CAB54354.2|  447|Caenorhabditis elegans Hypothetical ...    29   3.9  
AL033514-24|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical...    29   3.9  
U80451-2|AAB37837.1|  223|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AF016432-2|AAB65380.2|  522|Caenorhabditis elegans Hypothetical ...    28   6.9  

>AL110479-6|CAB54354.2|  447|Caenorhabditis elegans Hypothetical
           protein Y105C5B.8 protein.
          Length = 447

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
 Frame = +1

Query: 334 LCLESIKKVHCRLICLDKLTVYTTVR----FSHSTLCIVSLSYSNLGIHCHLLIALNILL 501
           +C+ S+   +    C +K  V   ++    F H  L + SLSY +LG + HLL  L    
Sbjct: 33  MCVFSVPLTYYSCECFEKERVQMHLKILMYFHHIALIMYSLSYISLGTY-HLLSRLVFDG 91

Query: 502 VVCLHRIQLCLVIKLQCTYS 561
              L  I +C+ +++  ++S
Sbjct: 92  CDLLVPIDICIWVRIFQSFS 111


>AL033514-24|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical
            protein Y75B8A.24 protein.
          Length = 2121

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = +1

Query: 469  CHLLIALNILL--VVCLHRIQLCLVIKLQCTYSQHNLVLHCTQVFNLCFKNVLGFVSKL 639
            C  ++AL++L   +  +H I +   +++  +YS   L+L+  Q+      + +G++S+L
Sbjct: 1627 CSPVMALSLLTPRIYPMHPISMQYAVRVLRSYSADELLLYIPQIVQAVRYDTMGYISEL 1685


>U80451-2|AAB37837.1|  223|Caenorhabditis elegans Hypothetical
           protein F11G11.5 protein.
          Length = 223

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 364 CRLICLDKLTVYTTVRFSHSTLCIVSLSYSNLGIHCHLL 480
           C L+CL  LT++ T  F    LC V  +  N   HC+ L
Sbjct: 185 CCLLCLIMLTIF-TFPFGLIFLCCVPCTVQNRCTHCNRL 222


>AF016432-2|AAB65380.2|  522|Caenorhabditis elegans Hypothetical
           protein C07G3.8 protein.
          Length = 522

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 470 QCIPKLEYDKDTMHKVLCENRTVVYTVNLSKQINLQCT 357
           +C+ +LE  +  +    C N T +Y+ +LS QI L  T
Sbjct: 190 KCVAELEQKRPDISSYRCLNGTDIYSEDLSVQIELFTT 227



 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 470 QCIPKLEYDKDTMHKVLCENRTVVYTVNLSKQINLQCT 357
           +C+ +LE  +  +    C N T +Y+ +LS QI L  T
Sbjct: 443 KCVAELEEKRPDVSSYRCLNGTDIYSEDLSVQIELFTT 480


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,102,525
Number of Sequences: 27780
Number of extensions: 323168
Number of successful extensions: 578
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)