Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0689
         (668 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23000.1 68417.m03318 calcineurin-like phosphoesterase family...    29   3.7  
At5g62970.1 68418.m07901 F-box family protein contains F-box dom...    28   4.9  
At3g50430.1 68416.m05516 expressed protein                             28   6.5  

>At4g23000.1 68417.m03318 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 932

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +1

Query: 457 LGIHCHLLIALNILLVVCLHRIQLCLVIKLQCTYSQHNLVLHCTQVFNLCFKNVLGFVSK 636
           L +  HL+ AL ++L++ L  I++C+  KL      H L      V N  F +  G   +
Sbjct: 802 LHVSAHLMAALILMLLLELG-IEICIQHKLLANSGYHTLYQWYKSVENEHFPDPTGLRDR 860

Query: 637 LKK*TF 654
           +++ TF
Sbjct: 861 IEQWTF 866


>At5g62970.1 68418.m07901 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 449

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 473 WQCIPKLEYDKDTMH 429
           W  +PKLEYD+D+M+
Sbjct: 39  WMRVPKLEYDEDSMY 53


>At3g50430.1 68416.m05516 expressed protein 
          Length = 642

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
 Frame = -1

Query: 503 TSKIFSAINRWQCIPKLEYDKDTMHKVLCENRTVVYTVNLSKQINLQCTFLI-----LSR 339
           T K+   + RW C PKL+    +       ++ +V  + L+ +  ++CT L+     L R
Sbjct: 289 TIKLIPDLLRW-CQPKLKSQSGSCMSRYLGHKLLVLMIRLTDKSKIKCTILLSWLQYLQR 347

Query: 338 HKDFFFESTLS 306
               F + TL+
Sbjct: 348 DSQGFLQHTLT 358


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,683,578
Number of Sequences: 28952
Number of extensions: 276742
Number of successful extensions: 490
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)