Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0688
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    79   6e-16
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    27   1.9  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    25   5.7  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   7.5  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    25   7.5  
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p...    25   9.9  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 78.6 bits (185), Expect = 6e-16
 Identities = 40/77 (51%), Positives = 48/77 (62%)
 Frame = +1

Query: 25  VFLFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXXN*YPLFTGLS 204
           + LFT+GGLTGVIL+NS +DI  HDTY+VVAHFHYVLS               P   GL 
Sbjct: 352 LILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMFGLM 410

Query: 205 LNSYILKIQFFTIFIGV 255
            N  +  IQF+ +FIGV
Sbjct: 411 YNETLASIQFWILFIGV 427



 Score = 42.3 bits (95), Expect = 5e-05
 Identities = 17/24 (70%), Positives = 19/24 (79%)
 Frame = +3

Query: 255 NITFFPQHFLGLAGIPRRYSDYPD 326
           NI F PQHFLGL G+PRR  DYP+
Sbjct: 428 NIVFGPQHFLGLNGMPRRIPDYPE 451


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 192 YRPFIKFLYTKNSIFYNIYWSNITFFPQHFLGL 290
           +RPF KFL  K  IF + YW        ++LGL
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQTVLSITNWLGL 232


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 68  AKITPVNPPTVNKNTTCSPHFH 3
           A  TP   PTV K   C+ HF+
Sbjct: 672 APFTPYLEPTVEKLVACTTHFY 693


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +1

Query: 49  LTGVILANSSIDITLHDTYYVV 114
           L  ++LAN+++D T+H  Y+++
Sbjct: 657 LDHILLANATLDKTVHSAYWLM 678


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 336 KYMSLDNLNIVEVFQLNLKNVVEKMLYYSNKYCK 235
           ++ SLDNL   ++FQLN   V E    Y  K C+
Sbjct: 768 RHFSLDNLR--QLFQLNDHTVCETHETYKCKRCR 799


>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 342 FMKYMSLDNLNIVEVFQLNLKNVVEKMLYYSNKYC 238
           +++  + +N  + EVFQL +   ++K   +S K C
Sbjct: 166 YVECSAKENTGVNEVFQLAVGLTIKKSFSFSKKSC 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,659,408
Number of Sequences: 5004
Number of extensions: 26680
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)