Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0688
(555 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 90 1e-18
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 1e-07
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.017
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.017
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.017
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.017
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.017
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.017
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_24105| Best HMM Match : Kazal_2 (HMM E-Value=1.6) 28 5.9
SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_145| Best HMM Match : OATP (HMM E-Value=4.2) 27 7.8
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 90.2 bits (214), Expect = 1e-18
Identities = 48/93 (51%), Positives = 55/93 (59%)
Frame = +1
Query: 4 WKCGLQVVFLFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXXN*Y 183
W G VFLFT+GGLTGVILANSS+D+ +HDTYYVVAHFHYVLS +
Sbjct: 44 WAIGF--VFLFTIGGLTGVILANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWF 101
Query: 184 PLFTGLSLNSYILKIQFFTIFIGVI*HFFHNIF 282
TG N KI F+ +FIGV FF F
Sbjct: 102 GKITGYCYNELYGKIHFWIMFIGVNITFFPQHF 134
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/38 (63%), Positives = 26/38 (68%)
Frame = +3
Query: 213 LYTKNSIFYNIYWSNITFFPQHFLGLAGIPRRYSDYPD 326
LY K + NITFFPQHFLGLAG PRRYSD+ D
Sbjct: 112 LYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFAD 149
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/38 (63%), Positives = 26/38 (68%)
Frame = +3
Query: 213 LYTKNSIFYNIYWSNITFFPQHFLGLAGIPRRYSDYPD 326
LY K + NITFFPQHFLGLAG PRRYSD+ D
Sbjct: 26 LYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFAD 63
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 276 HFLGLAGIPRRYSDYPD 326
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 276 HFLGLAGIPRRYSDYPD 326
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 276 HFLGLAGIPRRYSDYPD 326
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 276 HFLGLAGIPRRYSDYPD 326
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 276 HFLGLAGIPRRYSDYPD 326
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 276 HFLGLAGIPRRYSDYPD 326
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 180 ISFIYRPFIKFLYTKNSIFYNIYWSNITF 266
+ FIY + FL +KN F+ YW+ + +
Sbjct: 14 VGFIYVAKVVFLLSKNKSFFFEYWTPVVY 42
>SB_24105| Best HMM Match : Kazal_2 (HMM E-Value=1.6)
Length = 361
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 13 GLQVVFLFTVGGLTGVILANSSIDIT 90
GLQ VF+ T+G L G ++ + ID T
Sbjct: 128 GLQFVFMRTIGALPGPVIIGTIIDHT 153
>SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 27.5 bits (58), Expect = 7.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 255 NITFFPQHFLGLAGIPRRY 311
+I F +H+L + G+PRRY
Sbjct: 174 SIRFLVEHYLDIQGVPRRY 192
>SB_145| Best HMM Match : OATP (HMM E-Value=4.2)
Length = 264
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 13 GLQVVFLFTVGGLTGVILANSSIDIT 90
GLQ VF+ T+G L G ++ + ID T
Sbjct: 137 GLQFVFMRTLGALPGPVIVGTIIDHT 162
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,183,108
Number of Sequences: 59808
Number of extensions: 160955
Number of successful extensions: 352
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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