Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0688
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55363-10|AAL11103.1|  364|Caenorhabditis elegans Hypothetical p...    29   3.0  
U80027-15|AAC48116.2|  194|Caenorhabditis elegans Hypothetical p...    28   5.2  
U64858-5|AAB18284.1|  409|Caenorhabditis elegans Hypothetical pr...    28   5.2  

>U55363-10|AAL11103.1|  364|Caenorhabditis elegans Hypothetical
           protein ZC404.13 protein.
          Length = 364

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 196 GLSLNSYILKIQFFTIFIGVI*HF 267
           GLS+N YI   QFF++F  ++ +F
Sbjct: 289 GLSINDYINYFQFFSVFTNLLAYF 312


>U80027-15|AAC48116.2|  194|Caenorhabditis elegans Hypothetical
           protein T28A11.5 protein.
          Length = 194

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 369 YMNLMKKLYFMKYMSLDNLNIVEVFQLNLKNVVEKMLYYSNK 244
           Y+N M K+YF+   S D++N  +   L + +  E     +NK
Sbjct: 49  YVNFMAKMYFLDVKSQDSMNKFKTSCLFMADCTESFECQNNK 90


>U64858-5|AAB18284.1|  409|Caenorhabditis elegans Hypothetical
           protein C16D9.4 protein.
          Length = 409

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 198 PFIKFLYTKNSIFYNIYWSNITFFPQHFLGLAGIPRR 308
           P   F+++ +S F  ++ S +TFFP + + L   P R
Sbjct: 286 PIYFFIHSSHSNFATLFKSLLTFFPTNSISLLKDPNR 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,946,952
Number of Sequences: 27780
Number of extensions: 141367
Number of successful extensions: 375
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)