Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0687
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    63   3e-11
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    29   0.44 
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    28   1.0  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    27   3.1  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    26   4.1  
SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy...    26   4.1  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    26   5.4  
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    25   7.1  

>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
 Frame = +1

Query: 253 ANPPAPQPAVHIQGQ-EPLTSTMLAXAXLQEQKQMLGERLFPLIQRMHPDLAGKITGMLL 429
           A P   +    + G  E  T+  LA    + +KQ+LGE L+P +      L+GKITGMLL
Sbjct: 554 AGPAEAEAVPAVPGMPERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLL 613

Query: 430 EIDNSELLHMLEHAESLKAKVDEAV 504
           E+ NSELL +LE   +L  +V+EA+
Sbjct: 614 EMPNSELLELLEDDSALNERVNEAI 638


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +1

Query: 319 LAXAXLQEQKQMLGERLF-PLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVD 495
           L  A +Q+  +M G+  F P ++R H D  GK   +     +  LLH L    +   K++
Sbjct: 290 LESAQVQKVSRMYGQENFQPSMERFHVDPTGKYIALEGRSGHINLLHALTGQFATSFKIE 349

Query: 496 EAVAD 510
             ++D
Sbjct: 350 GVLSD 354


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
 Frame = +2

Query: 35  PVRPSTQAASAYANMQPTYR--PAXXXPAQSTIRTSLGARPITGQQGVAAAAASIRPPLV 208
           P  PS   ++  +   P+Y    A   PA S    +    P   Q     AA    PP  
Sbjct: 48  PPPPSVDHSAPPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPPQG 107

Query: 209 SXSXRPAYYKYTPN 250
               +P YY   PN
Sbjct: 108 GYPQQPYYYPNQPN 121


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 379 IQRMHPDLAGKITGMLLEID-NSELLHMLEHAESLKAKVDEAVAD 510
           +QR++P    ++ G LL+ID + EL+  L  +   +  VDE V +
Sbjct: 801 VQRINPSKTPQVVGALLDIDCDEELVQNLLMSVVGQVPVDELVEE 845


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 68  YANMQPTYRPAXXXPAQSTIRTSLGARP-ITGQQGVAAAAASI 193
           Y   QP+Y P    P+ +T+ + L   P +T   G  + A+SI
Sbjct: 271 YPFQQPSYNPNALVPSYTTLVSQLPPSPCLTVSSGPLSTASSI 313


>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 166

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 32  PPVRPSTQAASAYANMQPTYRP 97
           P VRP+ +AAS+Y   +P++ P
Sbjct: 134 PKVRPARRAASSYVPSRPSHVP 155


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +2

Query: 182 AASIRPPLVSXSXRPAYYKYTPNMPTHQLHNQQCISKDKNL*PL 313
           A S +P  +S S        +P+ P+ QL     IS+DKNL PL
Sbjct: 558 AISKQPSYLSISSSSKSINSSPS-PSIQLSVSSSISRDKNLSPL 600


>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 233 YKYTPNMPTHQLHNQQCISKDKNL*PLLCLQXHXS 337
           Y Y  N P+ +  + +C+ + KNL    CL+ + S
Sbjct: 365 YLYFGNAPSREAFHSECVRRVKNLHLSDCLRANKS 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,244
Number of Sequences: 5004
Number of extensions: 41406
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)