Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0687
(647 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 102 2e-22
SB_19076| Best HMM Match : HECT (HMM E-Value=0) 56 2e-08
SB_6163| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_59684| Best HMM Match : C1_3 (HMM E-Value=8.3) 29 2.5
SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59) 29 2.5
SB_1089| Best HMM Match : AbfB (HMM E-Value=0.034) 29 3.3
SB_54606| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_1658| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.16) 28 5.7
SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_3737| Best HMM Match : DM (HMM E-Value=6.1e-19) 27 9.9
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 102 bits (245), Expect = 2e-22
Identities = 49/66 (74%), Positives = 56/66 (84%)
Frame = +1
Query: 292 GQEPLTSTMLAXAXLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHA 471
GQEPL ++LA A QEQKQMLGERLFPLIQ HPD+AGKITGMLLEIDN+ELLHMLE
Sbjct: 425 GQEPLNPSVLAAATPQEQKQMLGERLFPLIQTNHPDMAGKITGMLLEIDNAELLHMLESR 484
Query: 472 ESLKAK 489
++L+ K
Sbjct: 485 DALQMK 490
>SB_19076| Best HMM Match : HECT (HMM E-Value=0)
Length = 2018
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/57 (47%), Positives = 39/57 (68%)
Frame = +1
Query: 334 LQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAV 504
L +Q LGERL+P + + P LA +ITGMLLE+ ++LL +L ++L +VDEAV
Sbjct: 1645 LPYHRQSLGERLYPRVHALKPALASRITGMLLELSPAQLLLLLASEDTLVQRVDEAV 1701
>SB_6163| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/51 (39%), Positives = 34/51 (66%)
Frame = +1
Query: 349 QMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEA 501
Q LG+R++ +Q+++P LA ++TGMLLE+ +L H+L+ E L + A
Sbjct: 79 QSLGDRVYGTVQQLYPTLAERVTGMLLEMPADQLNHLLDSREGLLEHIHTA 129
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/41 (43%), Positives = 29/41 (70%)
Frame = +1
Query: 340 EQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHML 462
EQK+ +GE++ I+++HP A ITGMLLE+ +LL+ +
Sbjct: 288 EQKEFIGEKIHDEIRKLHPGHADVITGMLLEMGVDQLLNTI 328
Score = 35.9 bits (79), Expect = 0.028
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +1
Query: 337 QEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAV 504
++ K ++GE ++ + +P A KITGMLLE++ L + + + L + EAV
Sbjct: 174 EDLKSIIGENIYSQLVEKYPKDADKITGMLLEMELDLLQKVSQDPDLLGQRATEAV 229
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +1
Query: 355 LGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVA 507
LG +++ ++ ++P+ A KITGMLL+ E+ +L + L ++ A +
Sbjct: 15 LGAKIYDVVFEIYPNEADKITGMLLDGGEEEVASLLSDEKRLNERIIAAAS 65
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 31.9 bits (69), Expect = 0.46
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +2
Query: 26 AQPPVRPSTQAASAY---ANMQPTYRPAXXXPAQSTIRTSLGARPITGQQGVAAA 181
AQ PV P+ A+AY A + PT PA PAQS + A P T A A
Sbjct: 1331 AQAPVNPTAAPATAYPAQAPVNPTAAPATAYPAQSPFNPT--AAPATAYPAQAPA 1383
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +2
Query: 26 AQPPVRPSTQAASAY---ANMQPTYRPAXXXPAQSTIRTSLG 142
AQ PV P+ A+AY + PT PA PAQ+ + G
Sbjct: 1347 AQAPVNPTAAPATAYPAQSPFNPTAAPATAYPAQAPANPTAG 1388
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Frame = +2
Query: 29 QPPVRPSTQAASAY---ANMQPTYRPAXXXPAQSTIRTSLGARPITGQQGVAAAAASIRP 199
Q P P+ A+AY A + PT PA PAQ+ + + A P T + + P
Sbjct: 1316 QAPANPTAAPATAYPAQAPVNPTAAPATAYPAQAPVNPT--AAPATAYPAQSPFNPTAAP 1373
Query: 200 PLVSXSXRPA 229
+ PA
Sbjct: 1374 ATAYPAQAPA 1383
>SB_59684| Best HMM Match : C1_3 (HMM E-Value=8.3)
Length = 138
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 151 GSCT*RCSYCRLGRXXXCWSVSGLHICICRCCLC 50
G C RC CR+ R C + + C+ RC C
Sbjct: 53 GCCVMRCVACRVMRCVACCVMRCVACCVMRCVDC 86
>SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59)
Length = 218
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 151 GSCT*RCSYCRLGRXXXCWSVSGLHICICRCCLC 50
G C RC CR+ R C + + C+ RC C
Sbjct: 133 GCCVMRCVACRVMRCVACCVMRCVACCVMRCVDC 166
>SB_1089| Best HMM Match : AbfB (HMM E-Value=0.034)
Length = 472
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/58 (27%), Positives = 24/58 (41%)
Frame = +2
Query: 131 TSLGARPITGQQGVAAAAASIRPPLVSXSXRPAYYKYTPNMPTHQLHNQQCISKDKNL 304
TS G + A AA+S + Y Y+ N P+ Q N C+ D+N+
Sbjct: 196 TSAGGSSLAAATAAALAASSSSGAALKIMNGAMYLIYSYNTPSMQFINNVCMRVDENI 253
>SB_54606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Frame = -2
Query: 73 CICRC---CLCARPYRGLCIPPW 14
C+CRC CLCA Y + +PP+
Sbjct: 16 CLCRCLCRCLCADVYVPMSMPPY 38
>SB_1658| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.16)
Length = 458
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 247 KHANPPAPQPAVHIQGQEPLTSTMLAXAXLQEQKQMLGERLFPLIQR 387
+H +P PAVH G + +++ L L+++ L E + +QR
Sbjct: 2 EHESPNQAAPAVHHPGNDRVSNLELENKLLRKEVSSLNEEMVSQLQR 48
>SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1115
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 79 HICICRCCLCARPYRGLCIPPWSCRS 2
++ CR R RGLC+PPW R+
Sbjct: 465 YVLSCRV-RTGRSIRGLCLPPWCSRA 489
>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = +2
Query: 5 PTTPRWNAQPPVRPSTQAASAYANMQPTYRPAXXXPAQSTIRTSLGARPITGQQGVAAAA 184
PT+ + PP STQ S+ + QP + PA A S PIT + + A
Sbjct: 168 PTSAPPASAPPKAQSTQGMSSGTSEQPWFSPANTVTAFGAKLASSLFGPITNENSLFGGA 227
>SB_3737| Best HMM Match : DM (HMM E-Value=6.1e-19)
Length = 312
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +1
Query: 241 YTKHANPPAPQPAVHIQGQEPLTSTMLAXAXLQEQKQMLGERLFPLIQR 387
+ +HA + PAV + Q P+ + + + + + E LFP +R
Sbjct: 259 FERHAAASSDSPAVKLPEQRPIRKRVTPPRLIPDARGVSHEELFPRFRR 307
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,835,434
Number of Sequences: 59808
Number of extensions: 339999
Number of successful extensions: 918
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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