Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0687
(647 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 95 4e-20
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 95 4e-20
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 95 4e-20
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 95 4e-20
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 92 3e-19
U41015-4|AAA82313.1| 317|Caenorhabditis elegans Hypothetical pr... 34 0.100
Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z83107-5|CAD92390.1| 764|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z75540-4|CAA99849.1| 169|Caenorhabditis elegans Hypothetical pr... 29 2.1
AF067948-7|AAC17699.1| 643|Caenorhabditis elegans Hypothetical ... 29 2.8
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 29 3.8
AC006794-5|AAK68502.1| 821|Caenorhabditis elegans Hypothetical ... 29 3.8
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 28 5.0
U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical pr... 28 5.0
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 28 5.0
Z81519-5|CAI46603.1| 590|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z81519-4|CAB04218.1| 592|Caenorhabditis elegans Hypothetical pr... 28 6.6
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 95.1 bits (226), Expect = 4e-20
Identities = 50/82 (60%), Positives = 64/82 (78%), Gaps = 2/82 (2%)
Frame = +1
Query: 268 PQPAVHIQGQEPLTSTMLAXAXLQEQKQMLGERLFPLIQRMHPDL--AGKITGMLLEIDN 441
PQ V I GQEPLTS MLA A QEQKQ+LGER++ LI++++P AGKITGM+LEIDN
Sbjct: 558 PQGIV-IGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDN 616
Query: 442 SELLHMLEHAESLKAKVDEAVA 507
SEL+ ML+ +E ++KVDEA +
Sbjct: 617 SELIMMLQDSELFRSKVDEAAS 638
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 95.1 bits (226), Expect = 4e-20
Identities = 50/82 (60%), Positives = 64/82 (78%), Gaps = 2/82 (2%)
Frame = +1
Query: 268 PQPAVHIQGQEPLTSTMLAXAXLQEQKQMLGERLFPLIQRMHPDL--AGKITGMLLEIDN 441
PQ V I GQEPLTS MLA A QEQKQ+LGER++ LI++++P AGKITGM+LEIDN
Sbjct: 498 PQGIV-IGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDN 556
Query: 442 SELLHMLEHAESLKAKVDEAVA 507
SEL+ ML+ +E ++KVDEA +
Sbjct: 557 SELIMMLQDSELFRSKVDEAAS 578
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 95.1 bits (226), Expect = 4e-20
Identities = 50/82 (60%), Positives = 64/82 (78%), Gaps = 2/82 (2%)
Frame = +1
Query: 268 PQPAVHIQGQEPLTSTMLAXAXLQEQKQMLGERLFPLIQRMHPDL--AGKITGMLLEIDN 441
PQ V I GQEPLTS MLA A QEQKQ+LGER++ LI++++P AGKITGM+LEIDN
Sbjct: 495 PQGIV-IGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDN 553
Query: 442 SELLHMLEHAESLKAKVDEAVA 507
SEL+ ML+ +E ++KVDEA +
Sbjct: 554 SELIMMLQDSELFRSKVDEAAS 575
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 95.1 bits (226), Expect = 4e-20
Identities = 50/82 (60%), Positives = 64/82 (78%), Gaps = 2/82 (2%)
Frame = +1
Query: 268 PQPAVHIQGQEPLTSTMLAXAXLQEQKQMLGERLFPLIQRMHPDL--AGKITGMLLEIDN 441
PQ V I GQEPLTS MLA A QEQKQ+LGER++ LI++++P AGKITGM+LEIDN
Sbjct: 558 PQGIV-IGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDN 616
Query: 442 SELLHMLEHAESLKAKVDEAVA 507
SEL+ ML+ +E ++KVDEA +
Sbjct: 617 SELIMMLQDSELFRSKVDEAAS 638
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 92.3 bits (219), Expect = 3e-19
Identities = 51/95 (53%), Positives = 67/95 (70%), Gaps = 10/95 (10%)
Frame = +1
Query: 247 KHANPPAPQPA--------VHIQGQEPLTSTMLAXAXLQEQKQMLGERLFPLIQRMHPD- 399
+H+ PA QP + I GQE LTS MLA A QEQKQ+LGER++ LI++M P+
Sbjct: 577 QHSQQPAQQPGQQGQGQSGIVIHGQETLTSHMLAQAAPQEQKQLLGERIYALIEKMFPNH 636
Query: 400 -LAGKITGMLLEIDNSELLHMLEHAESLKAKVDEA 501
AGKITGM+LEIDN+EL+ ML+ AE ++KV+EA
Sbjct: 637 KEAGKITGMMLEIDNAELIMMLQDAELFRSKVEEA 671
>U41015-4|AAA82313.1| 317|Caenorhabditis elegans Hypothetical
protein F20B6.5 protein.
Length = 317
Score = 33.9 bits (74), Expect = 0.100
Identities = 19/43 (44%), Positives = 21/43 (48%)
Frame = +2
Query: 5 PTTPRWNAQPPVRPSTQAASAYANMQPTYRPAXXXPAQSTIRT 133
P TPR N Q VRPS A QP YR P+QS R+
Sbjct: 120 PVTPR-NRQRSVRPSGSNAQPSGRAQPDYRDTRQRPSQSRDRS 161
>Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical
protein F32A7.5c protein.
Length = 877
Score = 29.9 bits (64), Expect = 1.6
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
Frame = +2
Query: 2 RPTTPRWNAQPPVRPSTQAAS---AYANMQPT--YRPAXXXPAQSTIRTSLGARPITGQQ 166
RP T A P RP+ AAS A + P RP A RT++ +R +
Sbjct: 244 RPATTTGTATRPTRPAVPAASAPRALTSRAPAGPSRPTTTRNAAPAPRTAVPSRATVLTK 303
Query: 167 GVAAAAASIRPPLVSXSXRPAYYKYTPNMPTHQLHNQQCISKDKNL 304
A+ A R P+ + S PA + P P + I++ K +
Sbjct: 304 TAPASKAPTRAPVPARS-APAPPRGAPAKPAANTAKAEPIAQKKTV 348
>Z83107-5|CAD92390.1| 764|Caenorhabditis elegans Hypothetical
protein F32A7.5b protein.
Length = 764
Score = 29.9 bits (64), Expect = 1.6
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
Frame = +2
Query: 2 RPTTPRWNAQPPVRPSTQAAS---AYANMQPT--YRPAXXXPAQSTIRTSLGARPITGQQ 166
RP T A P RP+ AAS A + P RP A RT++ +R +
Sbjct: 244 RPATTTGTATRPTRPAVPAASAPRALTSRAPAGPSRPTTTRNAAPAPRTAVPSRATVLTK 303
Query: 167 GVAAAAASIRPPLVSXSXRPAYYKYTPNMPTHQLHNQQCISKDKNL 304
A+ A R P+ + S PA + P P + I++ K +
Sbjct: 304 TAPASKAPTRAPVPARS-APAPPRGAPAKPAANTAKAEPIAQKKTV 348
>Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical
protein F32A7.5a protein.
Length = 878
Score = 29.9 bits (64), Expect = 1.6
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
Frame = +2
Query: 2 RPTTPRWNAQPPVRPSTQAAS---AYANMQPT--YRPAXXXPAQSTIRTSLGARPITGQQ 166
RP T A P RP+ AAS A + P RP A RT++ +R +
Sbjct: 244 RPATTTGTATRPTRPAVPAASAPRALTSRAPAGPSRPTTTRNAAPAPRTAVPSRATVLTK 303
Query: 167 GVAAAAASIRPPLVSXSXRPAYYKYTPNMPTHQLHNQQCISKDKNL 304
A+ A R P+ + S PA + P P + I++ K +
Sbjct: 304 TAPASKAPTRAPVPARS-APAPPRGAPAKPAANTAKAEPIAQKKTV 348
>Z75540-4|CAA99849.1| 169|Caenorhabditis elegans Hypothetical
protein F37D6.3 protein.
Length = 169
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 283 HIQGQEPLTSTMLAXAXLQEQKQMLGERLF 372
H+ Q P MLA A QEQ +LG+R++
Sbjct: 96 HMMAQGPGVYPMLAAAAPQEQNHLLGDRIY 125
>AF067948-7|AAC17699.1| 643|Caenorhabditis elegans Hypothetical
protein T27C4.2 protein.
Length = 643
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 259 PPAPQPAVHIQGQEPLTSTMLAXAXLQEQKQMLGERLFPLIQRMHPDL 402
PP P V + EP T+T L L+ +++LGE + ++ + D+
Sbjct: 251 PPQPTTTVPQEAAEPTTTTTLQP--LESTRRILGEEIEKSVENLEKDI 296
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = +2
Query: 71 ANMQPTYRPAXXXPAQSTIRTSLGARPITGQQGVAAAAASIRPPLVSXSXRP 226
A P PA Q + A P G QG AAA A+ PP + + P
Sbjct: 329 AGAAPEAAPAAAAAPQPAPAPAAAAAPAGGYQGGAAAGAAAPPPAPAAAAAP 380
>AC006794-5|AAK68502.1| 821|Caenorhabditis elegans Hypothetical
protein Y50D4A.1 protein.
Length = 821
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Frame = -3
Query: 516 PAVSNSFIYFSFQRLCMF*HMKKF*IINFQKHTSYFPSQIRVHSLNKWKQSFPKHLFLFL 337
P + S +Y + + +C H++K PS I+ H + ++ ++ +L
Sbjct: 309 PPIEESQLYKALEIICK--HIEKAETTGSLLSHEQLPSIIKSHGITGFQSDRSEYAYLHF 366
Query: 336 EXCXC----------KHSRGQRFLSLDMHCWLWSW 262
C +H R + L + +HC LWS+
Sbjct: 367 RLCGLLMHQLTTGFFEHLRREFPLQIKLHCLLWSY 401
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Frame = +2
Query: 5 PTTPRWNAQPPVRPSTQAASAYANMQPTY---RPAXXXPAQSTIRTSLGARPITGQQGVA 175
PT+P ++ P + + +Y+ P+Y P+ + S TS P +
Sbjct: 1591 PTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1650
Query: 176 AAAASIRPPLV---SXSXRPAYYKYTPNMPTH 262
+ + S P S S P+ +Y+P PT+
Sbjct: 1651 SPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTY 1682
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 5 PTTPRWNAQPPVRPSTQAASAYANMQPTYRPA 100
PT+P + P +P T A Y+ PTY P+
Sbjct: 1801 PTSPTYTPSPSEQPGTSA--QYSPTSPTYSPS 1830
>U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical
protein F35A5.4 protein.
Length = 524
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/65 (33%), Positives = 29/65 (44%)
Frame = -1
Query: 476 DSACSNI*RSSELSISKSIPVIFPAKSGCIL*ISGNSRSPSICFCSWXXAXASIVEVRGS 297
DSAC N+ RS + +P+ PA CI I G + C S + I +V S
Sbjct: 94 DSACINLVRSGPSCDQQCMPLCLPA---CINAIQGPTECAPQCMPS--CSSNCIQQVFPS 148
Query: 296 CPWIC 282
CP C
Sbjct: 149 CPQQC 153
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Frame = +2
Query: 5 PTTPRWNAQPPVRPSTQAASAYANMQPTY---RPAXXXPAQSTIRTSLGARPITGQQGVA 175
PT+P ++ P + + +Y+ P+Y P+ + S TS P +
Sbjct: 1598 PTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1657
Query: 176 AAAASIRPPLV---SXSXRPAYYKYTPNMPTH 262
+ + S P S S P+ +Y+P PT+
Sbjct: 1658 SPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTY 1689
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 5 PTTPRWNAQPPVRPSTQAASAYANMQPTYRPA 100
PT+P + P +P T A Y+ PTY P+
Sbjct: 1808 PTSPTYTPSPSEQPGTSA--QYSPTSPTYSPS 1837
>Z81519-5|CAI46603.1| 590|Caenorhabditis elegans Hypothetical
protein F29C12.1b protein.
Length = 590
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 457 YEEVLNYQFPKAYQLFSQPNQGAFSE*VETVVPQ 356
Y + N QF YQ F QP Q +++ + PQ
Sbjct: 338 YNQQYNQQFNPPYQQFQQPQQQQYNQQQQQQTPQ 371
>Z81519-4|CAB04218.1| 592|Caenorhabditis elegans Hypothetical
protein F29C12.1a protein.
Length = 592
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 457 YEEVLNYQFPKAYQLFSQPNQGAFSE*VETVVPQ 356
Y + N QF YQ F QP Q +++ + PQ
Sbjct: 340 YNQQYNQQFNPPYQQFQQPQQQQYNQQQQQQTPQ 373
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,144,896
Number of Sequences: 27780
Number of extensions: 247372
Number of successful extensions: 810
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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