Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0687
(647 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 81 8e-16
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 72 4e-13
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 71 5e-13
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 71 7e-13
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 71 9e-13
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 65 3e-11
At3g19350.1 68416.m02455 polyadenylate-binding protein-related /... 56 2e-08
At3g08670.1 68416.m01007 expressed protein 29 2.0
At5g61605.1 68418.m07730 expressed protein 29 2.7
At2g31090.1 68415.m03797 expressed protein 28 6.1
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 27 8.1
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 27 8.1
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 80.6 bits (190), Expect = 8e-16
Identities = 39/85 (45%), Positives = 58/85 (68%)
Frame = +1
Query: 250 HANPPAPQPAVHIQGQEPLTSTMLAXAXLQEQKQMLGERLFPLIQRMHPDLAGKITGMLL 429
H + P QP + +T LA A ++Q+ MLGE L+PL++++ P+ A K+TGMLL
Sbjct: 563 HRDSPTSQPVPIVA-----LATRLANAAPEQQRTMLGENLYPLVEQLEPESAAKVTGMLL 617
Query: 430 EIDNSELLHMLEHAESLKAKVDEAV 504
E+D +E+LH+LE E+LKAKV EA+
Sbjct: 618 EMDQTEVLHLLESPEALKAKVTEAM 642
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 71.7 bits (168), Expect = 4e-13
Identities = 36/72 (50%), Positives = 53/72 (73%)
Frame = +1
Query: 304 LTSTMLAXAXLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLK 483
LTS+ LA A ++ +MLGE+L+PL++R P K+TGMLLE+D +E+LH++E E+LK
Sbjct: 575 LTSS-LASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALK 633
Query: 484 AKVDEAVADCRL 519
+KV EA+ RL
Sbjct: 634 SKVSEALDVLRL 645
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 71.3 bits (167), Expect = 5e-13
Identities = 32/62 (51%), Positives = 49/62 (79%)
Frame = +1
Query: 319 LAXAXLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDE 498
L+ A ++Q+ MLGE L+PL++++ + A K+TGMLLE+D +E+LH+LE E+LKAKV E
Sbjct: 361 LSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAE 420
Query: 499 AV 504
A+
Sbjct: 421 AM 422
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 70.9 bits (166), Expect = 7e-13
Identities = 32/62 (51%), Positives = 46/62 (74%)
Frame = +1
Query: 319 LAXAXLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDE 498
LA A + +MLG+ L+PL+++ P A K+TGMLLE+D +E+LH+LE E+LKAKV E
Sbjct: 582 LALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSE 641
Query: 499 AV 504
A+
Sbjct: 642 AL 643
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 70.5 bits (165), Expect = 9e-13
Identities = 32/65 (49%), Positives = 48/65 (73%)
Frame = +1
Query: 310 STMLAXAXLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAK 489
+T LA A +Q+ +LGE L+PL+ ++ + A K+TGMLLE+D +E+LH+LE E+L AK
Sbjct: 563 ATSLANATPAQQRTLLGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEALNAK 622
Query: 490 VDEAV 504
V EA+
Sbjct: 623 VSEAL 627
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 65.3 bits (152), Expect = 3e-11
Identities = 30/53 (56%), Positives = 40/53 (75%)
Frame = +1
Query: 343 QKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEA 501
+ Q+LGE L PL++++ P LA KITGMLLE+D SELL +L+ E L +VDEA
Sbjct: 525 EMQLLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEA 577
>At3g19350.1 68416.m02455 polyadenylate-binding protein-related /
PABP-related similar to poly(A)-binding protein [Cucumis
sativus] GI:7528270; contains Pfam profile PF00658:
Poly-adenylate binding protein, unique domain
Length = 103
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/62 (40%), Positives = 41/62 (66%)
Frame = +1
Query: 319 LAXAXLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDE 498
LA +EQ+ ++GE LF +++ + P A KITGM+LE+D ++LH+L ++ K V E
Sbjct: 23 LASLPPKEQRDLIGETLFFMVEELEPQFAPKITGMILELDQDKVLHLLVTPKAFKEMVKE 82
Query: 499 AV 504
A+
Sbjct: 83 AM 84
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +2
Query: 2 RPTTPRWNAQPPVRPSTQAASAYANMQPT---YRPAXXXPAQSTIRTSLGARPITGQQGV 172
RP++P + RPST ++ A+ T RP + R SL +RP T
Sbjct: 192 RPSSPSSRSSSSARPSTPTRTSSASRSSTPSRIRPGSSSSSMDKARPSLSSRPSTPTSRP 251
Query: 173 AAAAAS 190
+A+S
Sbjct: 252 QLSASS 257
>At5g61605.1 68418.m07730 expressed protein
Length = 82
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 251 MPTHQLHNQQCISKDKNL*PLLCLQXHXSRNRNRCLGNDCFHLFRECTLIWLGK*LVC 424
+P H+ N Q + L P +CL+ +++RN+ C L R C L G VC
Sbjct: 17 VPLHEFGNAQGSEAELQLDPSMCLRVECAKHRNQKWCFCCAGLPRTCFLDKRGCTSVC 74
>At2g31090.1 68415.m03797 expressed protein
Length = 75
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 97 WSVSGLHICICRCCLC 50
W V L CIC CCLC
Sbjct: 32 WIVGLLLSCICPCCLC 47
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 27.5 bits (58), Expect = 8.1
Identities = 22/86 (25%), Positives = 27/86 (31%), Gaps = 2/86 (2%)
Frame = +2
Query: 5 PTTPRWNAQPPVRPSTQAASAYANMQPTYRPAXXXPAQSTIRTSLGARPITGQQGVAAAA 184
PTTP PP P+T PT P S S G P + +
Sbjct: 472 PTTPTPGGSPPSSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTPSPGGSPPSPSISPSPPI 531
Query: 185 ASIRPPL--VSXSXRPAYYKYTPNMP 256
PP S P+ TP+ P
Sbjct: 532 TVPSPPSTPTSPGSPPSPSSPTPSSP 557
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 396 RVHSLNKWKQSFPKHLFLFLEXC 328
+ S NK++ SFP+H+FL C
Sbjct: 58 KFRSTNKFRSSFPQHIFLESPIC 80
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,361,923
Number of Sequences: 28952
Number of extensions: 225245
Number of successful extensions: 839
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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