Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0686
         (695 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    43   0.008
UniRef50_Q3JK49 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  
UniRef50_Q9SK02 Cluster: DNA repair protein RAD51 homolog 2; n=6...    33   6.7  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 42.7 bits (96), Expect = 0.008
 Identities = 22/46 (47%), Positives = 27/46 (58%)
 Frame = -2

Query: 691 SSGFRFRFCGTFSKTLLLLGQILAISVRLSTLRTPTKPCAVGMALR 554
           S   RFR  G F + LLLLG +LA S+RLS    P +P   G+A R
Sbjct: 82  SQSSRFRSDGRFCEALLLLGLVLANSLRLSPYELPNRPRVAGIAFR 127


>UniRef50_Q3JK49 Cluster: Putative uncharacterized protein; n=1;
           Burkholderia pseudomallei 1710b|Rep: Putative
           uncharacterized protein - Burkholderia pseudomallei
           (strain 1710b)
          Length = 675

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = -2

Query: 340 HFSKVNKTVISFCGTKVAGHEINKVHSQLHSQMLNSHRLSFT*TET*GLVNLLRTNQDEL 161
           HF ++ +       T +AGH ++  H+    Q LN HR  F    +  L++L+R    + 
Sbjct: 594 HFDEIERIAADVQKTGIAGHLLDADHA---LQNLNQHRFGFHGFTSSWLLSLMRCCNIDR 650

Query: 160 NSLRYVISLDN 128
           ++LR V   DN
Sbjct: 651 SALRSVFPDDN 661


>UniRef50_Q9SK02 Cluster: DNA repair protein RAD51 homolog 2; n=6;
           Magnoliophyta|Rep: DNA repair protein RAD51 homolog 2 -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 370

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -2

Query: 343 WHFSKVNKTVISFCGTKVAGHEINKVHSQLHSQMLNSH 230
           +H +    +++S  GT++ G  IN +H++ HS M+N H
Sbjct: 329 FHITSAGISLLSDNGTELKGPGINTIHARGHSDMINFH 366


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 608,591,192
Number of Sequences: 1657284
Number of extensions: 11162156
Number of successful extensions: 21600
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21596
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)