Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0686
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    25   7.8  
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo...    25   7.8  
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz...    25   7.8  
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    25   7.8  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    25   7.8  

>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 600 P*GRLPSRAQLEWPFEAISC*VGIF 526
           P GR+ +R++L WP   I C + +F
Sbjct: 66  PDGRISTRSKLRWPLLIIWCILIVF 90


>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 165

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 600 P*GRLPSRAQLEWPFEAISC*VGIF 526
           P GR+ +R++L WP   I C + +F
Sbjct: 86  PDGRISTRSKLRWPLLIIWCILIVF 110


>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 300 PQKLITVLFTLEKCQTVSTFFY 365
           PQK +T LFT  KC+     +Y
Sbjct: 245 PQKAVTDLFTCGKCKQKKVSYY 266


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 600 P*GRLPSRAQLEWPFEAISC*VGIF 526
           P GR+ +R++L WP   I C + +F
Sbjct: 66  PDGRISTRSKLRWPLLIIWCILIVF 90


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 600 P*GRLPSRAQLEWPFEAISC*VGIF 526
           P GR+ +R++L WP   I C + +F
Sbjct: 66  PDGRISTRSKLRWPLLIIWCILIVF 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,766
Number of Sequences: 5004
Number of extensions: 51203
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)