Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0686
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0506 - 4400776-4400937,4401164-4401253,4401334-4401546,440...    29   3.5  
08_01_0505 - 4379722-4380795,4380868-4381008,4381099-4381270,438...    29   4.7  

>08_01_0506 -
           4400776-4400937,4401164-4401253,4401334-4401546,
           4401725-4401817,4402357-4402551,4402643-4402735,
           4403554-4403649,4404186-4404633,4405078-4405745,
           4406822-4406884,4408650-4408847,4409265-4409982,
           4410447-4410580
          Length = 1056

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 355 VETVWHFSKVNKTVISFCGTKVAGHEINKVH 263
           V  VWH    +  VI  CG KVAG   + +H
Sbjct: 369 VYQVWHNYSFDSHVIENCGIKVAGFHADTMH 399


>08_01_0505 -
           4379722-4380795,4380868-4381008,4381099-4381270,
           4381944-4382047,4382127-4382259,4384477-4384653,
           4385164-4385309,4385536-4385625,4385703-4385915,
           4386090-4386182,4386743-4386937,4387018-4387110,
           4387924-4388019,4388556-4388985,4389424-4390091,
           4392074-4392271,4392690-4393407,4394036-4394181
          Length = 1628

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 355 VETVWHFSKVNKTVISFCGTKVAGHEINKVH 263
           ++ VWH    +  VI  CG KVAG   + +H
Sbjct: 352 IKKVWHNYSFDIHVIENCGIKVAGFHADTMH 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,535,267
Number of Sequences: 37544
Number of extensions: 280502
Number of successful extensions: 527
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)