Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0686
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83233-1|CAB05760.3|  371|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF273797-1|AAG15145.1|  323|Caenorhabditis elegans nuclear recep...    30   1.4  
Z75955-11|CAB00125.1|  412|Caenorhabditis elegans Hypothetical p...    29   3.2  
U41548-6|AAA83201.1|  250|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z75541-1|CAA99853.3| 1119|Caenorhabditis elegans Hypothetical pr...    28   5.5  
DQ178237-1|ABA18179.1| 1161|Caenorhabditis elegans sodium depend...    28   5.5  
AY887903-1|AAX34415.1| 1119|Caenorhabditis elegans anion transpo...    28   5.5  
AF004926-1|AAC16758.1| 1119|Caenorhabditis elegans HCO3 transpor...    28   5.5  
AC006695-8|AAF39976.1|  351|Caenorhabditis elegans Hypothetical ...    28   5.5  

>Z83233-1|CAB05760.3|  371|Caenorhabditis elegans Hypothetical
           protein K06B4.1 protein.
          Length = 371

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 273 LISCPATLVPQKLITVLFTLEKCQTVSTFFYCSSSLLHNTHVLATDNL 416
           L++    L+  KLI +  T E+ Q +S  F+C+ ++ HN    A + L
Sbjct: 220 LLNRTCCLLVSKLIELKVTNEEYQLLSLIFFCNPTISHNLSDFARNTL 267


>AF273797-1|AAG15145.1|  323|Caenorhabditis elegans nuclear receptor
           NHR-51 protein.
          Length = 323

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 273 LISCPATLVPQKLITVLFTLEKCQTVSTFFYCSSSLLHNTHVLATDNL 416
           L++    L+  KLI +  T E+ Q +S  F+C+ ++ HN    A + L
Sbjct: 172 LLNRTCCLLVSKLIELKVTNEEYQLLSLIFFCNPTISHNLSDFARNTL 219


>Z75955-11|CAB00125.1|  412|Caenorhabditis elegans Hypothetical
           protein R07B7.16 protein.
          Length = 412

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 245 LRMQLRMNFVNFVPRDLSSTETNNGFVYFGKMPDGF 352
           ++MQ + NF++ + + LS  E     ++F  +PDGF
Sbjct: 138 IQMQQKDNFLSLIIKQLSHLEDQIEKLHFSTIPDGF 173


>U41548-6|AAA83201.1|  250|Caenorhabditis elegans Hypothetical
           protein M02F4.3 protein.
          Length = 250

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 233 RIQHLRMQLRMNFVNFVPRDLSSTETNNGFVYFGKMPDGFNVFLL 367
           ++Q +R   R++ +  +P+D  ST   NG V    + +G  V LL
Sbjct: 187 KMQVVRSNSRISLIEEIPKDAVSTPIRNGSVKLRTVSEGETVHLL 231


>Z75541-1|CAA99853.3| 1119|Caenorhabditis elegans Hypothetical
           protein F52B5.1 protein.
          Length = 1119

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 254 QLRMNFVNFVPRDLSSTETNNGFVYF-GKMPDG 349
           QL +  V  VP+D+SS E++ G ++F  K+P G
Sbjct: 206 QLTLPTVESVPKDISSEESSKGNLHFLKKLPAG 238


>DQ178237-1|ABA18179.1| 1161|Caenorhabditis elegans sodium dependent
           chloride bicarbonateanion exchanger alternative variant
           a protein.
          Length = 1161

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 254 QLRMNFVNFVPRDLSSTETNNGFVYF-GKMPDG 349
           QL +  V  VP+D+SS E++ G ++F  K+P G
Sbjct: 248 QLTLPTVESVPKDISSEESSKGNLHFLKKLPAG 280


>AY887903-1|AAX34415.1| 1119|Caenorhabditis elegans anion
           transporter ABTS-1 protein.
          Length = 1119

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 254 QLRMNFVNFVPRDLSSTETNNGFVYF-GKMPDG 349
           QL +  V  VP+D+SS E++ G ++F  K+P G
Sbjct: 206 QLTLPTVESVPKDISSEESSKGNLHFLKKLPAG 238


>AF004926-1|AAC16758.1| 1119|Caenorhabditis elegans HCO3 transporter
           protein.
          Length = 1119

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 254 QLRMNFVNFVPRDLSSTETNNGFVYF-GKMPDG 349
           QL +  V  VP+D+SS E++ G ++F  K+P G
Sbjct: 206 QLTLPTVESVPKDISSEESSKGNLHFLKKLPAG 238


>AC006695-8|AAF39976.1|  351|Caenorhabditis elegans Hypothetical
           protein W06H8.4 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 694 ISSGFRFRFCGTFSKTLLLLGQI 626
           I SGF F +C   SKT+  LG +
Sbjct: 182 IPSGFHFAYCSNVSKTIAYLGVV 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,266,634
Number of Sequences: 27780
Number of extensions: 278658
Number of successful extensions: 602
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)