Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0685
         (722 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    27   0.20 
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    27   0.20 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    26   0.36 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    26   0.36 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    26   0.36 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    26   0.36 
AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin pr...    24   1.1  
AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin pr...    24   1.1  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    22   5.8  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    22   5.8  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   7.6  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   7.6  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    21   7.6  

>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 359 LKNNFQLFIGHVTVLTIVISLKKCTLVENVKMRI 460
           L+   Q+F+  +T  TI + ++    +ENVK +I
Sbjct: 73  LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 106



 Score = 26.6 bits (56), Expect = 0.20
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 359 LKNNFQLFIGHVTVLTIVISLKKCTLVENVKMRI 460
           L+   Q+F+  +T  TI + ++    +ENVK +I
Sbjct: 149 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 182



 Score = 26.6 bits (56), Expect = 0.20
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 359 LKNNFQLFIGHVTVLTIVISLKKCTLVENVKMRI 460
           L+   Q+F+  +T  TI + ++    +ENVK +I
Sbjct: 225 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 258



 Score = 26.6 bits (56), Expect = 0.20
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 359 LKNNFQLFIGHVTVLTIVISLKKCTLVENVKMRI 460
           L+   Q+F+  +T  TI + ++    +ENVK +I
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 334



 Score = 26.6 bits (56), Expect = 0.20
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 359 LKNNFQLFIGHVTVLTIVISLKKCTLVENVKMRI 460
           L+   Q+F+  +T  TI + ++    +ENVK +I
Sbjct: 377 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 410



 Score = 26.6 bits (56), Expect = 0.20
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 359 LKNNFQLFIGHVTVLTIVISLKKCTLVENVKMRI 460
           L+   Q+F+  +T  TI + ++    +ENVK +I
Sbjct: 453 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 486



 Score = 26.6 bits (56), Expect = 0.20
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 359 LKNNFQLFIGHVTVLTIVISLKKCTLVENVKMRI 460
           L+   Q+F+  +T  TI + ++    +ENVK +I
Sbjct: 529 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 562



 Score = 26.6 bits (56), Expect = 0.20
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 359 LKNNFQLFIGHVTVLTIVISLKKCTLVENVKMRI 460
           L+   Q+F+  +T  TI + ++    +ENVK +I
Sbjct: 605 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 638



 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 374 QLFIGHVTVLTIVISLKKCTLVENVKMRI 460
           Q+F+  +T  TI + ++    +ENVK +I
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKI 30


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 359 LKNNFQLFIGHVTVLTIVISLKKCTLVENVKMRI 460
           L+   Q+F+  +T  TI + ++    +ENVK +I
Sbjct: 45  LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 78


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 451  NANHHQPVSPLLDVGLSYSCHNERSSAFRIQSFPAYRRKSSVQRAGGR 594
            NAN     +P+L   L+      ++   R+ S  A RRKS +Q  G +
Sbjct: 1446 NANGTNAGTPVLSRRLTMRRETMKALEVRVNSVMAERRKSHMQTLGAK 1493


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 451  NANHHQPVSPLLDVGLSYSCHNERSSAFRIQSFPAYRRKSSVQRAGGR 594
            NAN     +P+L   L+      ++   R+ S  A RRKS +Q  G +
Sbjct: 1446 NANGTNAGTPVLSRRLTMRRETMKALEVRVNSVMAERRKSHMQTLGAK 1493


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 451  NANHHQPVSPLLDVGLSYSCHNERSSAFRIQSFPAYRRKSSVQRAGGR 594
            NAN     +P+L   L+      ++   R+ S  A RRKS +Q  G +
Sbjct: 1446 NANGTNAGTPVLSRRLTMRRETMKALEVRVNSVMAERRKSHMQTLGAK 1493


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 451  NANHHQPVSPLLDVGLSYSCHNERSSAFRIQSFPAYRRKSSVQRAGGR 594
            NAN     +P+L   L+      ++   R+ S  A RRKS +Q  G +
Sbjct: 1446 NANGTNAGTPVLSRRLTMRRETMKALEVRVNSVMAERRKSHMQTLGAK 1493


>AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin
           protein.
          Length = 76

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 374 QLFIGHVTVLTIVISLKKCTLVENVKMRI 460
           Q+F+  +T  TI + ++    +ENVK +I
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKI 30


>AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin
           protein.
          Length = 64

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 374 QLFIGHVTVLTIVISLKKCTLVENVKMRI 460
           Q+F+  +T  TI + ++    +ENVK +I
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKI 30


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 145 LCFLNRFTMLRSDYNFKYAFTRRY*ICNLIIGS 243
           L  +  F ++   + F Y    +Y ICN +I +
Sbjct: 135 LAAMTTFHLIYEAHGFSYKCGIQYHICNTVISA 167


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 145 LCFLNRFTMLRSDYNFKYAFTRRY*ICNLIIGS 243
           L  +  F ++   + F Y    +Y ICN +I +
Sbjct: 131 LAAMTTFHLIYEAHGFSYKCGIQYHICNTVISA 163


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 117 TEYLLVRXITLFSKPLHH 170
           T+ +L+R I LFS  L H
Sbjct: 322 TDSMLIRNINLFSLQLAH 339


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 459 IRIFTFSTNVHFLSEITIVNTVTW 388
           I +F   TN+  L+ +TI  +  W
Sbjct: 81  IFLFAIYTNLSILTTVTIFKSAFW 104


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 117 TEYLLVRXITLFSKPLHH 170
           T+ +L+R I LFS  L H
Sbjct: 147 TDSMLIRNINLFSLQLAH 164


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,396
Number of Sequences: 336
Number of extensions: 3791
Number of successful extensions: 23
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)