Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0685
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    27   2.1  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   2.1  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    27   3.6  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   4.7  
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M...    26   6.3  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   6.3  

>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
 Frame = +1

Query: 457 NHHQ-PVSPLLDVGLSY----SCHNERSSAFRIQSFPAYRRKSSVQRAGGRP 597
           NH Q       D G+ Y    +C NE  S   + S+  Y+R S      GRP
Sbjct: 134 NHEQIDADTFADWGVDYLKYDNCFNEGKSGVPLISYERYKRMSDALNKTGRP 185


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +3

Query: 528 RVPHPIFPSISPQVIGPTGRGTPNAALTGTRSPVQNTSASSAIGSMT 668
           R P+P  P    + I  +G GT   A+    SPV    A S    +T
Sbjct: 102 RQPNPSIPQQFSKPINESGTGTMGPAVGELTSPVMKNRAESIFSPVT 148


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 57  PRNFDCLIYKFRGRIAGKVVTEYLLVRXITLFSKPLHHVAI 179
           P+ F  L+Y F  RI GKV    +    +TL +  LH V I
Sbjct: 76  PKGFWELLYPFGDRIRGKVNRRGMNGEMLTLENLNLHFVPI 116


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +1

Query: 535 RIQSFPAYRRKSSVQRAG-GRPTLRLPVRGLQSRTRLLHRPSVL*PVCPAH 684
           R  S PA+   + V +     PT RLP + L  R+  L  PS   P  P H
Sbjct: 32  RTVSTPAFMEPAPVSKKPLPPPTRRLPRKPLPFRSTSLQPPSSQPPAPPTH 82


>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 382

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 359 LKNNFQLFIGHVTVLTIVISLKKCTLVENVKMRI 460
           L+   Q+F+  +T  TI + ++    ++NVK +I
Sbjct: 73  LRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKI 106



 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 359 LKNNFQLFIGHVTVLTIVISLKKCTLVENVKMRI 460
           L+   Q+F+  +T  TI + ++    ++NVK +I
Sbjct: 149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKI 182



 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 359 LKNNFQLFIGHVTVLTIVISLKKCTLVENVKMRI 460
           L+   Q+F+  +T  TI + ++    ++NVK +I
Sbjct: 225 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKI 258



 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 359 LKNNFQLFIGHVTVLTIVISLKKCTLVENVKMRI 460
           L+   Q+F+  +T  TI + ++    ++NVK +I
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKI 334


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 615 TRSPVQNTSASSAIGSMTRMSGPLPFQLAN 704
           T  PV+NTSA      +   S P PF++AN
Sbjct: 873 TAEPVENTSAEP----IENTSAPTPFEIAN 898


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,978,634
Number of Sequences: 5004
Number of extensions: 62206
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)