Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0685
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0075 + 10873789-10873871,10873883-10874420                       32   0.53 
10_08_1059 + 22618999-22619206,22620386-22620416,22620440-226209...    31   1.2  
06_03_0002 - 15280292-15281550,15282714-15282840                       29   3.7  
03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856     29   3.7  
02_04_0468 - 23172561-23174201                                         29   3.7  
01_06_1306 + 36151907-36154369                                         29   3.7  
07_03_1176 + 24567720-24570932                                         29   4.9  
03_01_0243 + 1889885-1890049,1890158-1890217,1891113-1891226,189...    29   4.9  
02_02_0035 - 6253446-6255473                                           28   8.6  

>01_02_0075 + 10873789-10873871,10873883-10874420
          Length = 206

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = -1

Query: 692 KWQWAGHTGHRTDGR*SRRV----LDWRPRTGKRSVGRPPARW 576
           +W+ AG  G R  G  SRR+    + WR R G     RP  RW
Sbjct: 81  RWRGAGSDGWRCGGGGSRRIWQAAVGWRRRRGPAVERRPTMRW 123


>10_08_1059 +
           22618999-22619206,22620386-22620416,22620440-22620974,
           22621065-22621319
          Length = 342

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
 Frame = +3

Query: 477 STAGCRPLL*LPQ*TILRVPHPIFPSISPQVIGPTGRGTPNA----ALTGTRSPVQNTSA 644
           S +GCRP   L   +      P+  SI P  +  +  GT +A    ++  T  PVQNT+ 
Sbjct: 33  SCSGCRPASPLHLPSAESAHRPVSSSIRPTNVQGSPSGTGHALESDSMGPTDLPVQNTAG 92

Query: 645 SSAIGSMTRMS 677
             A G+ +R S
Sbjct: 93  WEARGATSRSS 103


>06_03_0002 - 15280292-15281550,15282714-15282840
          Length = 461

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 531 VPHPIFPSISPQVIGPTGRGTPNAALTGTRSPVQNTS 641
           +PH    S    VI PTG G P+ +L G R P Q  S
Sbjct: 26  IPHRQLISCKVIVISPTGEGCPSHSLIGDR-PKQTVS 61


>03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856
          Length = 1002

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 324  VLLINLFSISKSRSPQESPYRNRFNLV 244
            V+L+ L S  K+  P  SPY N FN+V
Sbjct: 950  VVLLELISDKKALDPSFSPYGNGFNIV 976


>02_04_0468 - 23172561-23174201
          Length = 546

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 602 SVGRPPARWTDDLRRYAGKDWMR 534
           ++GR PA W DD   +  + WMR
Sbjct: 411 AIGRDPASWGDDAAAFRPERWMR 433


>01_06_1306 + 36151907-36154369
          Length = 820

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 23/69 (33%), Positives = 33/69 (47%)
 Frame = +2

Query: 467 SLSLHCWM*ASPIVATMNDPPRSASNLSQHIAASHRSNGQGDAQRCAYRYAVSSPEHVCF 646
           +L +HC    +  VAT  D  RSA+ L + I     +NG GD QR A+ +A      +  
Sbjct: 445 TLLIHC----AQSVAT--DDRRSATELLKQIRQHAHANGDGD-QRLAHCFANGLEARLAG 497

Query: 647 IGHRFYDPY 673
            G + Y  Y
Sbjct: 498 TGSQIYKNY 506


>07_03_1176 + 24567720-24570932
          Length = 1070

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 324  VLLINLFSISKSRSPQESPYRNRFNLV 244
            V+L+ L S  K+  P  SPY N FN+V
Sbjct: 976  VVLMELISDKKALDPSFSPYGNGFNIV 1002


>03_01_0243 +
           1889885-1890049,1890158-1890217,1891113-1891226,
           1897117-1897182,1897272-1897379,1897476-1897559,
           1898042-1898143,1898282-1898395,1898474-1898554,
           1898931-1899050,1899398-1899493
          Length = 369

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -3

Query: 303 SISKSRSPQESP-YRNRFNLV*TYYKITNSIAPSKSVFEVI--IRSQHGEAV*KTKLS 139
           S+   + P  SP YR+R   V   Y   N + P KS+++ I  +RS  G  V  TKL+
Sbjct: 293 SLCGLQGPTISPVYRSRDGKVAVEYYAINVVVPQKSLYKSIQQLRSIGGSGVLVTKLT 350


>02_02_0035 - 6253446-6255473
          Length = 675

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 648 SAIGSMTRMSGPLPFQLANL 707
           S I SMT +SGP+P  LAN+
Sbjct: 395 SLILSMTHLSGPIPASLANM 414


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,243,608
Number of Sequences: 37544
Number of extensions: 411106
Number of successful extensions: 1155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)