Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0685
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    66   2e-11
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    62   3e-10
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    62   3e-10
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    62   3e-10
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    62   3e-10
Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical pr...    36   0.022
Z81504-1|CAB04116.1|  426|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 34/77 (44%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
 Frame = -1

Query: 710 LKISKLKWQWAGHTGHRTDGR*SRRVLDWRPRTGKRSVGRPPARWTDDLRR-YAGKD--- 543
           + I K K  WAGH   RTDGR +  + DW PR  KR VGRPP RW D LR+    +D   
Sbjct: 116 IHIKKRKLGWAGHVARRTDGRWTTLMNDWCPRDEKRPVGRPPMRWNDSLRKEVTTRDAFG 175

Query: 542 -----WMRNAEDRSLWQ 507
                W   A+DR  W+
Sbjct: 176 QVKQLWSTQAKDRKAWK 192


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 26/49 (53%), Positives = 31/49 (63%)
 Frame = -1

Query: 704 ISKLKWQWAGHTGHRTDGR*SRRVLDWRPRTGKRSVGRPPARWTDDLRR 558
           + K K  WAGH   R DGR +  + +WRP   KR VGRPP RWTD LR+
Sbjct: 807 VKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRK 855


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 26/49 (53%), Positives = 31/49 (63%)
 Frame = -1

Query: 704  ISKLKWQWAGHTGHRTDGR*SRRVLDWRPRTGKRSVGRPPARWTDDLRR 558
            + K K  WAGH   R DGR +  + +WRP   KR VGRPP RWTD LR+
Sbjct: 982  VKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRK 1030


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 26/49 (53%), Positives = 31/49 (63%)
 Frame = -1

Query: 704 ISKLKWQWAGHTGHRTDGR*SRRVLDWRPRTGKRSVGRPPARWTDDLRR 558
           + K K  WAGH   R DGR +  + +WRP   KR VGRPP RWTD LR+
Sbjct: 721 VKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRK 769


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 26/49 (53%), Positives = 31/49 (63%)
 Frame = -1

Query: 704 ISKLKWQWAGHTGHRTDGR*SRRVLDWRPRTGKRSVGRPPARWTDDLRR 558
           + K K  WAGH   R DGR +  + +WRP   KR VGRPP RWTD LR+
Sbjct: 333 VKKRKLGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRK 381


>Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical
           protein C07A9.10 protein.
          Length = 254

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
 Frame = -1

Query: 608 KRSVGRPPARWTDDLR-----RYAGKD----WMRNAEDRSLWQL*ERPTSS 483
           KR VG+PP RWTD LR     R  G +    W   A+DR  W+   R T +
Sbjct: 14  KRPVGKPPMRWTDSLRKEITTRDMGNNIITPWSTQAKDRKAWKAVIRTTET 64


>Z81504-1|CAB04116.1|  426|Caenorhabditis elegans Hypothetical
           protein F15H9.1 protein.
          Length = 426

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +3

Query: 453 CESSSACLSTAGCRPLL*LPQ*TILRVPHPIFPSISP--QVIGPTGRGTPNAALTGTRSP 626
           CE      + A  +    +P  + L++ H    +++   ++I  T   TPN  +  T S 
Sbjct: 276 CEKRKQKTTIASIKTTTSIPSTSTLQINHTTGSTVNSTTRMISSTIPSTPNLQINSTTSS 335

Query: 627 VQNTSASSAIGSMTRMS 677
           +QN++ S    +++  S
Sbjct: 336 IQNSTTSMISSTISSTS 352


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,379,007
Number of Sequences: 27780
Number of extensions: 348388
Number of successful extensions: 913
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)