Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0685
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.7  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.9  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   5.1  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   6.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   6.7  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   6.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 582 GRGTPNAALTGTRSPVQNTSASSAIGSMTRMS 677
           G+ +PN+A+    SP+ N S +S  GS   +S
Sbjct: 580 GKTSPNSAVRKCMSPI-NGSGASGSGSAENLS 610


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 654 WPMKQTCSGLETAYR 610
           W   Q CSG+ + YR
Sbjct: 113 WAKNQNCSGITSVYR 127


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 654 WPMKQTCSGLETAYR 610
           W   + CSG+ +AY+
Sbjct: 110 WAKNENCSGITSAYK 124


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 555 ISPQVIGPTGRGTPNAALTGTRSPVQNTSAS 647
           I+P    P+G  +P +   G  S + +TS S
Sbjct: 58  INPGNFSPSGPNSPGSFTAGCHSNLLSTSPS 88


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = -1

Query: 626  WRPRTGKRSVGRPPARWTDDLRRYAGKDWMRNAE 525
            W     ++   R P  WT D  RY   D   N E
Sbjct: 1093 WELIDTEKLTDRLPYPWTMDNERYVKVDMYMNLE 1126


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 555 ISPQVIGPTGRGTPNAALTGTRSPVQNTSAS 647
           I+P    P+G  +P +   G  S + +TS S
Sbjct: 58  INPGNFSPSGPNSPGSFTAGCHSNLLSTSPS 88


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 569 DLRRYAGKDWMRN 531
           DL  Y GK+W +N
Sbjct: 85  DLEFYLGKEWKKN 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,933
Number of Sequences: 438
Number of extensions: 4523
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)