Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0685
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17750.1 68418.m02081 AAA-type ATPase family protein contains...    31   0.77 
At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar t...    28   5.5  
At5g03830.1 68418.m00352 expressed protein hypothetical protein ...    28   5.5  
At2g19210.1 68415.m02241 leucine-rich repeat protein kinase, put...    28   5.5  
At4g28150.2 68417.m04037 expressed protein                             28   7.2  
At4g28150.1 68417.m04036 expressed protein                             28   7.2  
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains...    27   9.5  
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu...    27   9.5  

>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 392

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
 Frame = -2

Query: 613 PVSAALGVPLPVGPMTCGDMLGKI-----GCGTRRIV-HCGNYRRGLHPAVERQADDDSH 452
           P +  LG P    P+T   +L  I      CG  RIV    N +  L PA+ R    D H
Sbjct: 292 PATTTLGAPKGSTPLTLSGLLNCIDGLWSSCGDERIVIFTTNNKEVLDPALLRPGCMDMH 351

Query: 451 FYIFN*CTF 425
            Y+ + C+F
Sbjct: 352 IYLGH-CSF 359


>At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar to
           Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
           thaliana]
          Length = 917

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 585 RGTPNAALTGTRSPVQNTSASSAIGSMTRMSGPL 686
           R +  AA T   SP+ N   +SAIGS T+ S P+
Sbjct: 32  RNSNTAATTNRPSPINNAMRNSAIGS-TKSSPPM 64


>At5g03830.1 68418.m00352 expressed protein hypothetical protein
           F4I1.32, Arabidopsis thaliana, PIR:T02406
          Length = 265

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 533 SASNLSQHIAASHRSNGQGDAQRCAYRYAVSSPEHVCF 646
           +A NL+++  ASH      D QRC + +A+   E+ CF
Sbjct: 105 TALNLARY-KASHLVEVLNDVQRCLFVFAIMLMENKCF 141


>At2g19210.1 68415.m02241 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 881

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 296 EIEKRFINKTILYVCNLYLNSLKNNFQLFIGHVTVLT 406
           EI+  F N T+L++ +L  NSL      F+G++  LT
Sbjct: 428 EIDAAFSNLTLLHILDLSNNSLTGKIPDFLGNLHNLT 464


>At4g28150.2 68417.m04037 expressed protein
          Length = 283

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 555 CWERLDAERGGSFIVATIGEAYIQQWRDRLMMIRIFTFSTNVHFLSEIT 409
           C++   A   G  IV+  GE  +Q +   L  I+IFT  + ++ L E T
Sbjct: 55  CFDEWSAYGAGVPIVSETGETLVQYYVPYLSAIQIFTSHSVINTLREET 103


>At4g28150.1 68417.m04036 expressed protein
          Length = 285

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 555 CWERLDAERGGSFIVATIGEAYIQQWRDRLMMIRIFTFSTNVHFLSEIT 409
           C++   A   G  IV+  GE  +Q +   L  I+IFT  + ++ L E T
Sbjct: 57  CFDEWSAYGAGVPIVSETGETLVQYYVPYLSAIQIFTSHSVINTLREET 105


>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 505

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
 Frame = -2

Query: 577 GPMTCGDMLGKI-----GCGTRRIV-HCGNYRRGLHPAVERQADDDSHFYIFN*CTF 425
           GP+T   +L  I      CG  RI+    N++  L PA+ R    D H Y+ + C+F
Sbjct: 337 GPLTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDMHIYMGH-CSF 392


>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
           polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
           thaliana] (Genetics 139 (2), 921-939 (1995))
          Length = 631

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 359 LKNNFQLFIGHVTVLTIVISLKKCTLVENVKMRI 460
           L+   Q+F+  +T  TI + +K    ++NVK +I
Sbjct: 75  LRGGMQIFVQTLTGKTITLEVKSSDTIDNVKAKI 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,497,720
Number of Sequences: 28952
Number of extensions: 322972
Number of successful extensions: 885
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)