Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0684
         (689 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P15104 Cluster: Glutamine synthetase; n=312; cellular o...    77   5e-13
UniRef50_Q7T2P7 Cluster: Glutamine synthetase; n=4; Coelomata|Re...    74   3e-12
UniRef50_Q874T6 Cluster: Glutamine synthetase; n=5; Fungi/Metazo...    70   5e-11
UniRef50_Q42688 Cluster: Glutamine synthetase cytosolic isozyme;...    67   3e-10
UniRef50_Q43127 Cluster: Glutamine synthetase, chloroplast/mitoc...    66   1e-09
UniRef50_Q4QJ42 Cluster: Glutamine synthetase, putative; n=12; E...    63   7e-09
UniRef50_UPI0000F20B38 Cluster: PREDICTED: hypothetical protein;...    61   2e-08
UniRef50_Q42689 Cluster: Glutamine synthetase, chloroplast precu...    59   9e-08
UniRef50_P04772 Cluster: Glutamine synthetase 2; n=211; Bacteria...    58   2e-07
UniRef50_Q6N241 Cluster: Glutamine synthetase II; n=16; Bacteria...    58   2e-07
UniRef50_P20805 Cluster: Glutamine synthetase 2; n=19; Frankia|R...    56   6e-07
UniRef50_Q5UR44 Cluster: Putative glutamine synthetase; n=1; Aca...    56   8e-07
UniRef50_O96463 Cluster: Glutamine synthetase; n=1; Skeletonema ...    54   3e-06
UniRef50_A0DB13 Cluster: Chromosome undetermined scaffold_44, wh...    48   2e-04
UniRef50_Q9LIH6 Cluster: Uracil-DNA glycosylase-like protein; n=...    33   8.7  

>UniRef50_P15104 Cluster: Glutamine synthetase; n=312; cellular
           organisms|Rep: Glutamine synthetase - Homo sapiens
           (Human)
          Length = 373

 Score = 76.6 bits (180), Expect = 5e-13
 Identities = 33/47 (70%), Positives = 41/47 (87%)
 Frame = +1

Query: 1   RHETGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPAS 141
           R  TG HET++INDFSAGVANR +SIRIPR+V ++KKGY EDRRP++
Sbjct: 298 RRLTGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSA 344


>UniRef50_Q7T2P7 Cluster: Glutamine synthetase; n=4; Coelomata|Rep:
           Glutamine synthetase - Danio rerio (Zebrafish)
           (Brachydanio rerio)
          Length = 371

 Score = 74.1 bits (174), Expect = 3e-12
 Identities = 32/47 (68%), Positives = 42/47 (89%)
 Frame = +1

Query: 1   RHETGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPAS 141
           R  TG HET++I++FSAGVANRG+SIRIPR+V ++KKGY EDRRP++
Sbjct: 298 RRLTGHHETSNIHEFSAGVANRGASIRIPRAVGQEKKGYFEDRRPSA 344


>UniRef50_Q874T6 Cluster: Glutamine synthetase; n=5; Fungi/Metazoa
           group|Rep: Glutamine synthetase - Kluyveromyces lactis
           (Yeast) (Candida sphaerica)
          Length = 372

 Score = 70.1 bits (164), Expect = 5e-11
 Identities = 32/46 (69%), Positives = 39/46 (84%)
 Frame = +1

Query: 10  TGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASKL 147
           TG HETAS++ FS+GVANRG+SIRIPRSV ++  GY EDRRPAS +
Sbjct: 296 TGRHETASMSTFSSGVANRGASIRIPRSVNKEGYGYFEDRRPASNI 341


>UniRef50_Q42688 Cluster: Glutamine synthetase cytosolic isozyme;
           n=6; Eukaryota|Rep: Glutamine synthetase cytosolic
           isozyme - Chlamydomonas reinhardtii
          Length = 382

 Score = 67.3 bits (157), Expect = 3e-10
 Identities = 32/49 (65%), Positives = 37/49 (75%)
 Frame = +1

Query: 1   RHETGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASKL 147
           R  TG HET+S++DFS GVANRG SIR+ R V  +K GY EDRRPAS L
Sbjct: 318 RRLTGKHETSSMSDFSWGVANRGCSIRVGRMVPVEKSGYYEDRRPASNL 366


>UniRef50_Q43127 Cluster: Glutamine synthetase,
           chloroplast/mitochondrial precursor; n=594;
           Viridiplantae|Rep: Glutamine synthetase,
           chloroplast/mitochondrial precursor - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 430

 Score = 65.7 bits (153), Expect = 1e-09
 Identities = 32/49 (65%), Positives = 35/49 (71%)
 Frame = +1

Query: 1   RHETGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASKL 147
           R  TG HETASI+ FS GVANRG SIR+ R      KGYLEDRRPAS +
Sbjct: 348 RRLTGKHETASIDQFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNM 396


>UniRef50_Q4QJ42 Cluster: Glutamine synthetase, putative; n=12;
           Eukaryota|Rep: Glutamine synthetase, putative -
           Leishmania major
          Length = 536

 Score = 62.9 bits (146), Expect = 7e-09
 Identities = 27/43 (62%), Positives = 35/43 (81%)
 Frame = +1

Query: 10  TGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPA 138
           TG HET+ +++FSAGV  R +SIRIP +VA + KGY+EDRRPA
Sbjct: 453 TGKHETSKVSEFSAGVGTRCTSIRIPNAVASEGKGYMEDRRPA 495


>UniRef50_UPI0000F20B38 Cluster: PREDICTED: hypothetical protein;
           n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 277

 Score = 61.3 bits (142), Expect = 2e-08
 Identities = 31/47 (65%), Positives = 35/47 (74%)
 Frame = +1

Query: 1   RHETGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPAS 141
           R  TG H TA I++FSAGVANR  SIRIP  VA +K GY EDRRPA+
Sbjct: 208 RRLTGRHVTAGIHEFSAGVANRRVSIRIPCRVALNKCGYFEDRRPAA 254


>UniRef50_Q42689 Cluster: Glutamine synthetase, chloroplast
           precursor; n=17; cellular organisms|Rep: Glutamine
           synthetase, chloroplast precursor - Chlamydomonas
           reinhardtii
          Length = 380

 Score = 59.3 bits (137), Expect = 9e-08
 Identities = 29/46 (63%), Positives = 32/46 (69%)
 Frame = +1

Query: 10  TGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASKL 147
           TG HET  IN F  GVA+RGSSIRIP  V     GYLEDRRPA+ +
Sbjct: 319 TGKHETCDINTFKHGVADRGSSIRIPLPVMLKGYGYLEDRRPAANV 364


>UniRef50_P04772 Cluster: Glutamine synthetase 2; n=211;
           Bacteria|Rep: Glutamine synthetase 2 - Bradyrhizobium
           japonicum
          Length = 344

 Score = 58.4 bits (135), Expect = 2e-07
 Identities = 30/46 (65%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
 Frame = +1

Query: 10  TGLHETASINDFSAGVANRGSSIRIPRS-VAEDKKGYLEDRRPASK 144
           TG HETA  N FS GVA+RG+SIR+P S V    KGYLEDRRP S+
Sbjct: 274 TGKHETAPWNKFSYGVADRGASIRVPHSFVNNGYKGYLEDRRPNSQ 319


>UniRef50_Q6N241 Cluster: Glutamine synthetase II; n=16;
           Bacteria|Rep: Glutamine synthetase II - Rhodopseudomonas
           palustris
          Length = 345

 Score = 58.0 bits (134), Expect = 2e-07
 Identities = 29/46 (63%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
 Frame = +1

Query: 10  TGLHETASINDFSAGVANRGSSIRIPRS-VAEDKKGYLEDRRPASK 144
           TG HETA  N FS G+A+RG+SIR+P S V    KGYLEDRRP S+
Sbjct: 274 TGKHETAPWNKFSYGIADRGASIRVPHSFVNNGYKGYLEDRRPNSQ 319


>UniRef50_P20805 Cluster: Glutamine synthetase 2; n=19; Frankia|Rep:
           Glutamine synthetase 2 - Frankia alni
          Length = 352

 Score = 56.4 bits (130), Expect = 6e-07
 Identities = 25/46 (54%), Positives = 35/46 (76%)
 Frame = +1

Query: 10  TGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASKL 147
           TG HETA  N +S G ++RG+S+RIP +V + KKG+LEDRRP + +
Sbjct: 268 TGKHETAPWNKYSWGASDRGASVRIPWAVEKAKKGWLEDRRPNANM 313


>UniRef50_Q5UR44 Cluster: Putative glutamine synthetase; n=1;
           Acanthamoeba polyphaga mimivirus|Rep: Putative glutamine
           synthetase - Mimivirus
          Length = 353

 Score = 56.0 bits (129), Expect = 8e-07
 Identities = 24/46 (52%), Positives = 33/46 (71%)
 Frame = +1

Query: 10  TGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASKL 147
           TG HETASI++FS G+ +R  S+RIP    ++  GY EDRRPA+ +
Sbjct: 291 TGDHETASIDEFSHGIGSRQCSVRIPNDTVKNGYGYFEDRRPAANI 336


>UniRef50_O96463 Cluster: Glutamine synthetase; n=1; Skeletonema
           costatum|Rep: Glutamine synthetase - Skeletonema
           costatum (Marine centric diatom)
          Length = 410

 Score = 54.0 bits (124), Expect = 3e-06
 Identities = 26/43 (60%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
 Frame = +1

Query: 10  TGLHETASINDFSAGVANRGSSIRIPRSV-AEDKKGYLEDRRP 135
           TG  ETAS+++FS GVANRG+S+RI R   AE+  GY EDR+P
Sbjct: 341 TGKFETASMDEFSFGVANRGASVRIGRDTEAEEMLGYFEDRKP 383


>UniRef50_A0DB13 Cluster: Chromosome undetermined scaffold_44, whole
           genome shotgun sequence; n=11; Oligohymenophorea|Rep:
           Chromosome undetermined scaffold_44, whole genome
           shotgun sequence - Paramecium tetraurelia
          Length = 398

 Score = 48.4 bits (110), Expect = 2e-04
 Identities = 21/46 (45%), Positives = 28/46 (60%)
 Frame = +1

Query: 10  TGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASKL 147
           TG HET   + F+ G   RG S+R+P    E  +GY EDRRPA+ +
Sbjct: 302 TGRHETGKYDQFTWGDGARGCSVRVPIITKEQGQGYFEDRRPAANI 347


>UniRef50_Q9LIH6 Cluster: Uracil-DNA glycosylase-like protein; n=6;
           Magnoliophyta|Rep: Uracil-DNA glycosylase-like protein -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 330

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 380 YLDRHVIYNALNNGPFKDIKTIIV 451
           Y  +H+I+NALN  PF  +KT+I+
Sbjct: 147 YPPQHLIFNALNTTPFDRVKTVII 170


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,089,899
Number of Sequences: 1657284
Number of extensions: 10409682
Number of successful extensions: 24604
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 23855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24594
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)