Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0684
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    65   8e-12
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    31   0.12 
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    29   0.48 
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr...    25   7.8  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   7.8  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 65.3 bits (152), Expect = 8e-12
 Identities = 30/46 (65%), Positives = 37/46 (80%)
 Frame = +1

Query: 10  TGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASKL 147
           TG HET SI+ F+ GVA+RG+S+RIPRSVA +  GY EDRRPAS +
Sbjct: 298 TGRHETGSIDKFTYGVADRGASVRIPRSVAMNGCGYFEDRRPASSI 343


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 432 SLNGPLLSALYITCLSKYLLLCSAYEGFVYYIP 334
           ++N P    L ITC+  Y+ LCS +   V+ +P
Sbjct: 125 AVNWPFRKKLKITCVYSYVALCSTFASSVFSVP 157


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 432 SLNGPLLSALYITCLSKYLLLCSAYEGFVYYIP 334
           ++N P    L  TC+  Y+ LCS++   V+ +P
Sbjct: 126 AVNWPFKRKLKTTCILAYVALCSSFASSVFAVP 158


>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 458

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 519 SNHISLFVINSFNTNKINTIY 581
           SN ISL +++SFNT   + +Y
Sbjct: 293 SNSISLSLVSSFNTEATSNLY 313


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 24/82 (29%), Positives = 38/82 (46%)
 Frame = -3

Query: 252 TWAQQLSYTSFLFQCYSFKNYKYRMSAIDHQSTGPQF*SRSTIFQITLLIFSDRARYSDT 73
           T +Q L  TS     Y      Y  S++D  ST     S S+  Q     FS    YSD 
Sbjct: 657 TGSQSLKETSS--PAYVSSTVSYTSSSVDSSSTYNSTGSSSSDSQS----FSGTT-YSDP 709

Query: 72  ATTISHACTEVINTGSFMKTSL 7
            TTI+   + ++++ + M++S+
Sbjct: 710 TTTITSEVSSILSSPTSMQSSV 731


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,592
Number of Sequences: 5004
Number of extensions: 46380
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)