BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= prgv0684 (689 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 69 5e-12 03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200... 66 2e-11 02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 66 2e-11 03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295,642... 65 4e-11 12_01_0549 + 4396159-4397327,4397341-4398353,4398609-4398676,439... 29 4.6 11_06_0235 + 21588212-21589029,21589426-21591358 29 4.6 >04_04_1445 - 33658355-33658417,33658536-33658669,33659056-33659116, 33659197-33659356,33660032-33660081,33662237-33662290, 33662630-33662704,33662821-33662949,33663065-33663152, 33663266-33663372,33663513-33663561,33663657-33663760, 33663941-33663980,33664409-33664659,33664674-33664686, 33665846-33666355,33666437-33667657,33667973-33668221, 33668305-33668531 Length = 1194 Score = 68.5 bits (160), Expect = 5e-12 Identities = 33/49 (67%), Positives = 37/49 (75%) Frame = +1 Query: 1 RHETGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASKL 147 R TGLHETASI++FS GVANRG SIR+ R KGYLEDRRPAS + Sbjct: 1093 RRLTGLHETASIDNFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNM 1141 >03_05_0899 - 28619081-28619208,28619309-28619369,28619936-28620095, 28620200-28620237,28620341-28620394,28620562-28620636, 28620744-28620872,28621172-28621259,28621340-28621446, 28621547-28621595,28621683-28621786,28622019-28622133, 28622517-28622596 Length = 395 Score = 66.5 bits (155), Expect = 2e-11 Identities = 30/49 (61%), Positives = 36/49 (73%) Frame = +1 Query: 1 RHETGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASKL 147 R TG HETA IN+F GVANRG+S+R+ R +D KGY EDRRPAS + Sbjct: 317 RRLTGRHETADINNFVWGVANRGASVRVGRDTEKDGKGYFEDRRPASNM 365 >02_05_0661 - 30693701-30693853,30694037-30694196,30694290-30694381, 30694469-30694543,30694671-30694799,30694916-30695003, 30695118-30695224,30695645-30695693,30695802-30695905, 30696108-30696147,30696838-30696911 Length = 356 Score = 66.5 bits (155), Expect = 2e-11 Identities = 30/49 (61%), Positives = 36/49 (73%) Frame = +1 Query: 1 RHETGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASKL 147 R TG HETA IN FS GVANRG+S+R+ R ++ KGY EDRRPAS + Sbjct: 290 RRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNM 338 >03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295, 6426490-6426564,6426701-6426829,6427312-6427375, 6427761-6427867,6428795-6428843,6428955-6429058, 6429166-6429205,6429492-6429565 Length = 349 Score = 65.3 bits (152), Expect = 4e-11 Identities = 30/49 (61%), Positives = 35/49 (71%) Frame = +1 Query: 1 RHETGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASKL 147 R TG HETA IN F GVANRG+SIR+ R ++ KGY EDRRPAS + Sbjct: 282 RRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNM 330 >12_01_0549 + 4396159-4397327,4397341-4398353,4398609-4398676, 4399229-4399291 Length = 770 Score = 28.7 bits (61), Expect = 4.6 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%) Frame = +1 Query: 94 VAEDKKGYLEDRRPAS-KLW 150 + D KGY++D RPA KLW Sbjct: 510 IVHDSKGYMDDTRPADRKLW 529 >11_06_0235 + 21588212-21589029,21589426-21591358 Length = 916 Score = 28.7 bits (61), Expect = 4.6 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%) Frame = -2 Query: 520 LIRLII*HESNNL-KSHNIRRNIYYDYSFNIFKWSI 416 ++R I H+S+NL KSHN+ ++ SFN K SI Sbjct: 529 IVRRIALHKSSNLEKSHNLAASMPQLRSFNAIKCSI 564 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,514,149 Number of Sequences: 37544 Number of extensions: 251811 Number of successful extensions: 537 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 529 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 537 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1756684372 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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