Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0684
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591...    69   5e-12
03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200...    66   2e-11
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943...    66   2e-11
03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295,642...    65   4e-11
12_01_0549 + 4396159-4397327,4397341-4398353,4398609-4398676,439...    29   4.6  
11_06_0235 + 21588212-21589029,21589426-21591358                       29   4.6  

>04_04_1445 - 33658355-33658417,33658536-33658669,33659056-33659116,
            33659197-33659356,33660032-33660081,33662237-33662290,
            33662630-33662704,33662821-33662949,33663065-33663152,
            33663266-33663372,33663513-33663561,33663657-33663760,
            33663941-33663980,33664409-33664659,33664674-33664686,
            33665846-33666355,33666437-33667657,33667973-33668221,
            33668305-33668531
          Length = 1194

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 33/49 (67%), Positives = 37/49 (75%)
 Frame = +1

Query: 1    RHETGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASKL 147
            R  TGLHETASI++FS GVANRG SIR+ R      KGYLEDRRPAS +
Sbjct: 1093 RRLTGLHETASIDNFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNM 1141


>03_05_0899 -
           28619081-28619208,28619309-28619369,28619936-28620095,
           28620200-28620237,28620341-28620394,28620562-28620636,
           28620744-28620872,28621172-28621259,28621340-28621446,
           28621547-28621595,28621683-28621786,28622019-28622133,
           28622517-28622596
          Length = 395

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 30/49 (61%), Positives = 36/49 (73%)
 Frame = +1

Query: 1   RHETGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASKL 147
           R  TG HETA IN+F  GVANRG+S+R+ R   +D KGY EDRRPAS +
Sbjct: 317 RRLTGRHETADINNFVWGVANRGASVRVGRDTEKDGKGYFEDRRPASNM 365


>02_05_0661 -
           30693701-30693853,30694037-30694196,30694290-30694381,
           30694469-30694543,30694671-30694799,30694916-30695003,
           30695118-30695224,30695645-30695693,30695802-30695905,
           30696108-30696147,30696838-30696911
          Length = 356

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 30/49 (61%), Positives = 36/49 (73%)
 Frame = +1

Query: 1   RHETGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASKL 147
           R  TG HETA IN FS GVANRG+S+R+ R   ++ KGY EDRRPAS +
Sbjct: 290 RRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNM 338


>03_02_0210 -
           6425708-6425863,6425955-6426114,6426204-6426295,
           6426490-6426564,6426701-6426829,6427312-6427375,
           6427761-6427867,6428795-6428843,6428955-6429058,
           6429166-6429205,6429492-6429565
          Length = 349

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 30/49 (61%), Positives = 35/49 (71%)
 Frame = +1

Query: 1   RHETGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPASKL 147
           R  TG HETA IN F  GVANRG+SIR+ R   ++ KGY EDRRPAS +
Sbjct: 282 RRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNM 330


>12_01_0549 +
           4396159-4397327,4397341-4398353,4398609-4398676,
           4399229-4399291
          Length = 770

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +1

Query: 94  VAEDKKGYLEDRRPAS-KLW 150
           +  D KGY++D RPA  KLW
Sbjct: 510 IVHDSKGYMDDTRPADRKLW 529


>11_06_0235 + 21588212-21589029,21589426-21591358
          Length = 916

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 520 LIRLII*HESNNL-KSHNIRRNIYYDYSFNIFKWSI 416
           ++R I  H+S+NL KSHN+  ++    SFN  K SI
Sbjct: 529 IVRRIALHKSSNLEKSHNLAASMPQLRSFNAIKCSI 564


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,514,149
Number of Sequences: 37544
Number of extensions: 251811
Number of successful extensions: 537
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)