Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0684
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50671| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   3e-13
SB_57625| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_42414| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_19951| Best HMM Match : SNF (HMM E-Value=0)                         28   6.2  

>SB_50671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 33/47 (70%), Positives = 38/47 (80%)
 Frame = +1

Query: 1   RHETGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPAS 141
           R  TG HET+ I+ FS GVANRG+S+RIPR  AED KGYLEDRRP+S
Sbjct: 336 RRLTGAHETSRIDQFSHGVANRGASVRIPRQCAEDGKGYLEDRRPSS 382


>SB_57625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1751

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/103 (19%), Positives = 42/103 (40%)
 Frame = -3

Query: 312 PLFRGINLPYAYGELQFFRYTWAQQLSYTSFLFQCYSFKNYKYRMSAIDHQSTGPQF*SR 133
           P+   ++LP+    ++ F   W   +     LF C  F   + ++S      T     SR
Sbjct: 584 PVVNWLSLPFVAWSVRIFPLAWNTAVCMRIELFGCREFPVPRIQLSPSSLNLTATPGQSR 643

Query: 132 STIFQITLLIFSDRARYSDTATTISHACTEVINTGSFMKTSLV 4
             I ++T      +  +    + ++H  + V   G+ + T+L+
Sbjct: 644 DLICKVTGQPVPRQITWFANESDVNHLSSGVTQQGNTLTTTLL 686


>SB_42414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 414 LSALYITCLSKYLLLCSAYEGFVYYIPFCTVPFIPLFRGINLPYAYGEL 268
           ++ +++  LS +L+   A  G+ Y IP C +    L  G +LP A   L
Sbjct: 203 VAVIWMAVLSYFLVWMVAIIGYTYTIPECVMGMTFLAAGSSLPDAIASL 251


>SB_19951| Best HMM Match : SNF (HMM E-Value=0)
          Length = 359

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 401 YNALNNGPFKDIKTIIVINISTNI 472
           YN  +N  F+D  T+ VIN ST++
Sbjct: 125 YNKFHNNCFRDAMTVSVINCSTSV 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,648,100
Number of Sequences: 59808
Number of extensions: 326932
Number of successful extensions: 820
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)