Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0684
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29560-1|CAA82655.1|  367|Caenorhabditis elegans Hypothetical pr...    71   1e-12
AL110479-26|CAB54376.1|  385|Caenorhabditis elegans Hypothetical...    69   4e-12
AL110479-25|CAB60321.1|  388|Caenorhabditis elegans Hypothetical...    69   4e-12
Z80223-3|CAB02317.1|  369|Caenorhabditis elegans Hypothetical pr...    66   2e-11
Z82259-3|CAB05127.1|  368|Caenorhabditis elegans Hypothetical pr...    64   7e-11
AC006618-2|AAK68249.1|  340|Caenorhabditis elegans Glutamine syn...    32   0.44 
U00052-4|AAK21419.2|  438|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z29560-1|CAA82655.1|  367|Caenorhabditis elegans Hypothetical
           protein K03H1.1 protein.
          Length = 367

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 33/47 (70%), Positives = 38/47 (80%)
 Frame = +1

Query: 1   RHETGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPAS 141
           R  TG HET+S + FS GVANRG SIRIPR VA ++KGYLEDRRP+S
Sbjct: 304 RRLTGRHETSSADKFSWGVANRGCSIRIPRQVAAERKGYLEDRRPSS 350


>AL110479-26|CAB54376.1|  385|Caenorhabditis elegans Hypothetical
           protein Y105C5B.28b protein.
          Length = 385

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 33/47 (70%), Positives = 37/47 (78%)
 Frame = +1

Query: 1   RHETGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPAS 141
           R  TGLHETASI+ FS GVA+R SSIRIPRS  +D  GY EDRRP+S
Sbjct: 300 RRLTGLHETASIDKFSYGVASRASSIRIPRSTDDDGYGYFEDRRPSS 346


>AL110479-25|CAB60321.1|  388|Caenorhabditis elegans Hypothetical
           protein Y105C5B.28a protein.
          Length = 388

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 33/47 (70%), Positives = 37/47 (78%)
 Frame = +1

Query: 1   RHETGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPAS 141
           R  TGLHETASI+ FS GVA+R SSIRIPRS  +D  GY EDRRP+S
Sbjct: 303 RRLTGLHETASIDKFSYGVASRASSIRIPRSTDDDGYGYFEDRRPSS 349


>Z80223-3|CAB02317.1|  369|Caenorhabditis elegans Hypothetical
           protein F26D10.10 protein.
          Length = 369

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 30/47 (63%), Positives = 36/47 (76%)
 Frame = +1

Query: 1   RHETGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPAS 141
           R  TG HET+  + FS G+ANR  SIRIPR VA++ KGYLEDRRP+S
Sbjct: 304 RRLTGRHETSQADKFSWGIANRACSIRIPRQVADETKGYLEDRRPSS 350


>Z82259-3|CAB05127.1|  368|Caenorhabditis elegans Hypothetical
           protein C28D4.3 protein.
          Length = 368

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 28/47 (59%), Positives = 36/47 (76%)
 Frame = +1

Query: 1   RHETGLHETASINDFSAGVANRGSSIRIPRSVAEDKKGYLEDRRPAS 141
           R  TG HET+  + FS G+ANR  S+RIPR VA++ +GYLEDRRP+S
Sbjct: 304 RRLTGRHETSQADQFSWGIANRACSVRIPRQVADEGRGYLEDRRPSS 350


>AC006618-2|AAK68249.1|  340|Caenorhabditis elegans Glutamine
           synthetase (glutamate-ammonia ligase) protein 1 protein.
          Length = 340

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = +1

Query: 1   RHETGLHETASINDFSAGVANRGSSIRIP 87
           R   G ++T +++ FS+GVA+R +S+RIP
Sbjct: 307 RRLIGANQTETVDAFSSGVADREASVRIP 335


>U00052-4|AAK21419.2|  438|Caenorhabditis elegans Hypothetical
           protein K02F3.7 protein.
          Length = 438

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 333 FCTVPFIPLFRGINLPYAYGELQFFRYTWAQQLSYT 226
           FC  P +PLF      + YG  ++ RY +A Q  Y+
Sbjct: 155 FCNPPPLPLFLNTCRLWYYGCPKYERYHYASQFIYS 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,226,853
Number of Sequences: 27780
Number of extensions: 246753
Number of successful extensions: 577
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)