Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0683
         (688 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    22   4.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.1  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   7.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   7.2  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   7.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   7.2  

>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 89  NAFYFILFSFFTQF 48
           N FYFI+F  F  F
Sbjct: 295 NNFYFIIFQVFESF 308


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 6   RAEMDKEEKLRRITELREKRK-KDKIESIR 92
           + E+D+EE+L   T ++ KR+ +D+ E  R
Sbjct: 867 KKEVDEEERLENHTSVKIKREAEDRDEDER 896


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 90  RRKQYTERMRALRVMADLHYERYL 161
           +R  YT R + L +  + HY RYL
Sbjct: 236 QRTAYT-RHQILELEKEFHYNRYL 258


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 90  RRKQYTERMRALRVMADLHYERYL 161
           +R  YT R + L +  + HY RYL
Sbjct: 236 QRTAYT-RHQILELEKEFHYNRYL 258


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 312 IMWHKIFTEKKY*ENTLKD 368
           I+W    T+K+Y EN   D
Sbjct: 421 ILWTSTLTQKEYLENLPSD 439


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 90  RRKQYTERMRALRVMADLHYERYL 161
           +R  YT R + L +  + HY RYL
Sbjct: 236 QRTAYT-RHQILELEKEFHYNRYL 258


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,503
Number of Sequences: 336
Number of extensions: 3043
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)